BAC Information

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BAC

Clone NameB6Ng01-239J01
Chromosome4 (Build37)
Map Location 73,872,261 - 73,873,306
singlet/doubletsinglet
Overlap geneLOC100039774
Upstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3
Downstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239J01.bB6Ng01-239J01.g
ACCGA049957GA049958
length1,0891,059
definitionB6Ng01-239J01.b B6Ng01-239J01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaacagaaaaatctcaaagggctaagaagcacttaaagaaatg
ttcaaagtacttagttgttggggcggacctgcagctctcatgtctgggtt
ggaacctgggaggcatcttggaactgaaagaaaagagggaatctaggagg
gtagagagagaaatggagccaagaaagtattctgatcaagactcaaattt
ttaatggtgggcacgctttataaaggagaggggaggcccattcctgccaa
atcatccttggagcccagctgcaagtgaccacgtgtaggctactgaatag
ctaggcagactcccagcaggtagcagcagtggtagtggctgaacaataga
gtgatctagggaggcaggctccaccctaggtgatctccttagtggtattg
caaagtcaaggtctggctcaggtggcttcaggcttgtggaaggctacact
tagtgatcagagaaatgcaaattaacacaaccctgagattccaccttaca
ccaatcagaatggctaaaatcaaaaccaggtgacaacacatgttggagag
gatgtggagaaagaggaacactccttcattgctggtggtattgcaaagta
gtaagaccactgtggaaatcaatctggaggttcctcagaaaactagaaat
agatctacctaaagtggacccgctacaccactctggggcataaatccaat
agatgccacacaatgcagcagtggcaagtgttccagtatgttcatagtgg
ccttatctgtgaaggccagaagctagaaacaacccagacatcccacgaca
gaaggatggatacagaaaacgtggttcatttacacaagggactactactt
agctattaagaacgagttcatgcaggcaaactcatgggaactagaaaata
tcatcctgagtgaggtaattcatacccaaaaggacatgcatggtatgtac
tcactaataagtggatattaatcaagaaagtacagaatacccaggataca
attccacaaaagccaagggcccagtgagatgcctcaatcacctcttggga
gggagaagaaaaacagtcatgggggggtggggggggcta
gaattcaccatgtgatggcaccgagacaggtcagctgtgaaaacaggtat
gttcaaactacgacgtgacagtgctggcacatggtaggcaagcaaacagg
catgctggcaccaccacatggtgtagttcgtcaaaagaccctcactcaca
aagaacacagagaccactgccatcgctacaaaatgtatgaggatttttat
tgatccaacatgttagggactcccctctcagcacccaggccagaggagag
acccagaacaaagaaagaacacactttttatacctttgtaaggggcagat
ttgagcaacaaggttctcattggtgtagcaagtaaccctttggttggttt
gtatagtgactaagtaacctttggcctagtgactcactatgcttgctccc
atggtgggttattatgatttggtcagcaaagtaatagcacattaacgtca
cagctattaatgtcaggggaattcttgcaacaaggtcagggtggtctgtg
gtctttgtcagaattcagtgtggggcagggggcaggagacttgctaatct
tgctatggttatttctctgagaacagctaatattgttttggtagttacaa
gcttaatcattttgaccgctaaaactatgtttttacatttgtttagtcag
tcagcttccttatctggctctgcacttggcctgctagtacagtttggaaa
gtccttttcgaagggggaaggtactaggtggtcttgaattcattttggat
attacaggggctctgctggcaaatggcatgggtgggaacaggtgtgccta
tggcaccatgtggttgtcactgagacacaacaaacctgtgaagaggctgt
ccatgagcccttgtgcctgtatggtagcaatgagtcatggtaccatttgt
gaaaaggtcattttcctggctgccacatggcagtgcctggtacatcgcaa
ggtacaaaaaacaggcatgcccgtgcttgcctttcatgggcaaacctggg
gtacagtatattgtgcagtgtgtgggctcaaaggtggccacatgacggcc
ttggactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_73872261_73873306
seq2: B6Ng01-239J01.g_67_1125

seq1  GAATTCACCATGTGATGGCACCGAGACAGGTCAGCTGTGAAAACAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGTGATGGCACCGAGACAGGTCAGCTGTGAAAACAGGTAT  50

seq1  GTTCAAACTACGACGTGACAGTGCTGGCACATGGTAGGCAAGCAAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACTACGACGTGACAGTGCTGGCACATGGTAGGCAAGCAAACAGG  100

seq1  CATGCTGGCACCACCACATGGTGTAGTTCGTCAAAAGACCCTCACTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGCACCACCACATGGTGTAGTTCGTCAAAAGACCCTCACTCACA  150

seq1  AAGAACACAGAGACCACTGCCATCGCTACAAAATGTATGAGGATTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACAGAGACCACTGCCATCGCTACAAAATGTATGAGGATTTTTAT  200

seq1  TGATCCAACATGTTAGGGACTCCCCTCTCAGCACCCAGGCCAGAGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAACATGTTAGGGACTCCCCTCTCAGCACCCAGGCCAGAGGAGAG  250

seq1  ACCCAGAACAAAGAAAGAACACACTTTTTATACCTTTGTAAGGGGCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAACAAAGAAAGAACACACTTTTTATACCTTTGTAAGGGGCAGAT  300

seq1  TTGAGCAACAAGGTTCTCATTGGTGTAGCAAGTAACCCTTTGGTTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAACAAGGTTCTCATTGGTGTAGCAAGTAACCCTTTGGTTGGTTT  350

seq1  GTATAGTGACTAAGTAACCTTTGGCCTAGTGACTCACTATGCTTGCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGACTAAGTAACCTTTGGCCTAGTGACTCACTATGCTTGCTCCC  400

seq1  ATGGTGGGTTATTATGATTTGGTCAGCAAAGTAATAGCACATTAACGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGTTATTATGATTTGGTCAGCAAAGTAATAGCACATTAACGTCA  450

seq1  CAGCTATTAATGTCAGGGGAATTCTTGCAACAAGGTCAGGGTGGTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTAATGTCAGGGGAATTCTTGCAACAAGGTCAGGGTGGTCTGTG  500

seq1  GTCTTTGTCAGAATTCAGTGTGGGGCAGGGGGCAGGAGACTTGCTAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTCAGAATTCAGTGTGGGGCAGGGGGCAGGAGACTTGCTAATCT  550

seq1  TGCTATGGTTATTTCTCTGAGAACAGCTAATATTGTTTTGGTAGTTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGTTATTTCTCTGAGAACAGCTAATATTGTTTTGGTAGTTACAA  600

seq1  GCTTAATCATTTTGACCGCTAAAACTATGTTTTTACATTTGTTTAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATCATTTTGACCGCTAAAACTATGTTTTTACATTTGTTTAGTCAG  650

seq1  TCAGCTTCCTTATCTGGCTCTGCACTTGGCCTGCTAGTACAGTTTGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCCTTATCTGGCTCTGCACTTGGCCTGCTAGTACAGTTTGGAAA  700

seq1  GTCCTTTTCGAAGGGGGAAGGTACTAGGTGGTCTTGAATTCATTTTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTCGAAGGGGGAAGGTACTAGGTGGTCTTGAATTCATTTTGGAT  750

seq1  ATTACAGGGGCTCTGCTGGCAAATGGCATGGGTGGGAACAGGTGTGCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGGGCTCTGCTGGCAAATGGCATGGGTGGGAACAGGTGTGCCTA  800

seq1  TGGCACCATGTGG-TGTCACTGAGACACAACAAACCTGTGAAGAGGCTGT  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGCACCATGTGGTTGTCACTGAGACACAACAAACCTGTGAAGAGGCTGT  850

seq1  CCATGAGCCCTTGTGCCTGTATGGTAGCAATGAGTCATGGTA-CATTTGT  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCATGAGCCCTTGTGCCTGTATGGTAGCAATGAGTCATGGTACCATTTGT  900

seq1  G-AAAGGGCA-TTTCCTGGCTGCCACATGGCAGTG-CTGGTACATCGC-A  944
      | ||||| || |||||||||||||||||||||||| |||||||||||| |
seq2  GAAAAGGTCATTTTCCTGGCTGCCACATGGCAGTGCCTGGTACATCGCAA  950

seq1  GGTAC-AAAAACAGGCATGCCCGTGC-TGCC-TTCAT-GGCAAAACT-GG  989
      ||||| |||||||||||||||||||| |||| ||||| |||||| || ||
seq2  GGTACAAAAAACAGGCATGCCCGTGCTTGCCTTTCATGGGCAAACCTGGG  1000

seq1  GTACAGTATA-TGTGCAGGTGTGTGGGC-CCAAGGT-GCCACATGACGGC  1036
      |||||||||| |||||| |||||||||| | ||||| |||||||||||||
seq2  GTACAGTATATTGTGCA-GTGTGTGGGCTCAAAGGTGGCCACATGACGGC  1049

seq1  CCTGGACTAT  1046
      | ||||||||
seq2  CTTGGACTAT  1059