BAC Information

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BAC

Clone NameB6Ng01-239O05
Chromosome4 (Build37)
Map Location 27,534,422 - 27,535,509
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239O05.bB6Ng01-239O05.g
ACCGA050195GA050196
length1,093676
definitionB6Ng01-239O05.b B6Ng01-239O05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccatgtgggagttaatggtgtttaagttttaagttgagttaaac
gaagcagaggtaaactaagaaattaagcaaatagtagttttaacatttgt
ccaacttttacccctaaataagctgaactatgtgatcactaaaacaagca
gaagttaatccatcatatgtgaagaagaatgctgaatcactgactctctt
cagcaaagcaagggctcgtcctgttcttcatgaccctgagttccatccaa
tgcaggaggaaaagatgaaattatttcaaatttaacaactgattttcata
tgccaacatttattttctctagaccttgtcaatcttattccttagcttct
caaaatcatatccatcatggcatgttaaactgcaatattcacagattatc
atagggtaacggtgaatttctatttaaagtacatatataagtaatatata
tatataaatatacatatatatttatatatacatataaagtattggtatgt
atactatctcaaaagcactatgtaatatattataattgattatatagtta
atacatttttatatgggtatagacatattttaatatatgttatatatgat
ttcctcttttatatctatttctccttctaaacaatgtttaaacaatctta
aatgagatcaagttctagatcattaaaatctatatagaagagggtctctt
tcttaaggaggataaggagatggaattcttttgcataatcattttccaat
ttttaagtatatctaaaacatgaacaatagaaaggggttgtaaatgttag
gaaaatatgcaccagaatttctgagtaatattatattcagtgcatgtatt
taaaataatctaaaacatgcttagatgcttagtatcttagtaaatcagga
atgtatatcatggtgaaagaatttgggcttaagagtctttctacatcatg
aatctcatcactagaatcataaagcttcagaggttgagtgatccataaaa
ttcatccttcctagaagtgccatcctctctgatctcttcatgatgtacta
attaactggacaaataatactagagagagatgaattgctctaa

gaattcaacactgatttccatagagggatgcatacatgcatcctcaccag
cagtggaggaggggatctcttactctacatctttgtcagcatggattggc
acttgttttgttgatcatagtcattctggcaggtataagatgaaatctcc
aaaagttttgatttatatttacctgatggtttaaggcactgaacatttca
tgaagtactttgtaattactttaaattccttttttgagatttctctgttt
agttatgagcaacatataaaaatgtattatgcattttttcatatctaatt
aattatgttctttatatattttggatattggctgtctatcagatttgaag
ttggggaaaatatttacccaatttctcaactgctgctttgtctttaagac
catgtcatttcctttgaagaagcttgtcaggtctgtgagatgtcatttat
taattgttggtcttagtgactttgccaatagtcttctattaagaaaagca
ggatattggagagagagagagagagagagagagagagagagagagagaga
gagagagagagagaggagcggcagggaaaaaggggggccagttcagatat
gggaggttataggggagaagtcagagggtcccagaatttgaaagtatgtc
tgtagcaatgggggagggggaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27534422_27535509
seq2: B6Ng01-239O05.b_46_1138

seq1  GAATTCCCATGTGGGAGTTAATGGTGTTTAAGTTTTAAGTTGAGTTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGTGGGAGTTAATGGTGTTTAAGTTTTAAGTTGAGTTAAAC  50

seq1  GAAGCAGAGGTAAACTAAGAAATTAAGCAAATAGTAGTTTTAACATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGGTAAACTAAGAAATTAAGCAAATAGTAGTTTTAACATTTGT  100

seq1  CCAACTTTTACCCCTAAATAAGCTGAACTATGTGATCACTAAAACAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTTACCCCTAAATAAGCTGAACTATGTGATCACTAAAACAAGCA  150

seq1  GAAGTTAATCCATCATATGTGAAGAAGAATGCTGAATCACTGACTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAATCCATCATATGTGAAGAAGAATGCTGAATCACTGACTCTCTT  200

seq1  CAGCAAAGCAAGGGCTCGTCCTGTTCTTCATGACCCTGAGTTCCATCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGCAAGGGCTCGTCCTGTTCTTCATGACCCTGAGTTCCATCCAA  250

seq1  TGCAGGAGGAAAAGATGAAATTATTTCAAATTTAACAACTGATTTTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGGAAAAGATGAAATTATTTCAAATTTAACAACTGATTTTCATA  300

seq1  TGCCAACATTTATTTTCTCTAGACCTTGTCAATCTTATTCCTTAGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACATTTATTTTCTCTAGACCTTGTCAATCTTATTCCTTAGCTTCT  350

seq1  CAAAATCATATCCATCATGGCATGTTAAACTGCAATATTCACAGATTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCATATCCATCATGGCATGTTAAACTGCAATATTCACAGATTATC  400

seq1  ATAGGGTAACGGTGAATTTCTATTTAAAGTACATATATAAGTAATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTAACGGTGAATTTCTATTTAAAGTACATATATAAGTAATATATA  450

seq1  TATATAAATATACATATATATTTATATATACATATAAAGTATTGGTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATATACATATATATTTATATATACATATAAAGTATTGGTATGT  500

seq1  ATACTATCTCAAAAGCACTATGTAATATATTATAATTGATTATATAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCTCAAAAGCACTATGTAATATATTATAATTGATTATATAGTTA  550

seq1  ATACATTTTTATATGGGTATAGACATATTTTAATATATGTTATATATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTTTATATGGGTATAGACATATTTTAATATATGTTATATATGAT  600

seq1  TTCCTCTTTTATATCTATTTCTCCTTCTAAACAATGTTTAAACAATCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTTATATCTATTTCTCCTTCTAAACAATGTTTAAACAATCTTA  650

seq1  AATGAGATCAAGTTCTAGATCATTAAAATCTATATAGAAGAGGGTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCAAGTTCTAGATCATTAAAATCTATATAGAAGAGGGTCTCTT  700

seq1  TCTTAAGGAGGATAAGGAGATGGAATTCTTTTGCATAATCATTTTCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGAGGATAAGGAGATGGAATTCTTTTGCATAATCATTTTCCAAT  750

seq1  TTTTAAGTATATCTAAAACATGAACAATAGAAAGGGGTTGTAAATGTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTATATCTAAAACATGAACAATAGAAAGGGGTTGTAAATGTTAG  800

seq1  GAAAATATGCACCAGAATTTCTGAGTAATATTATATTCAGTGCATGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGCACCAGAATTTCTGAGTAATATTATATTCAGTGCATGTATT  850

seq1  TAAAATAATCTAAAACATGCTTAGATGCTTAGTATCTTAGTAAATCAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAAATAATCTAAAACATGCTTAGATGCTTAGTATCTTAGTAAATCA-GG  899

seq1  AATGTATATCATGGTGAAAGAATTTGGGCTTAAGAGTCTTTCTACATCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATCATGGTGAAAGAATTTGGGCTTAAGAGTCTTTCTACATCAT  949

seq1  GAATCTCATCACTAGAATCATAAAGCTTCAGAGGTTGAGTGATCCATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCATCACTAGAATCATAAAGCTTCAGAGGTTGAGTGATCCATAAA  999

seq1  ATTCATCCTTCCTAG-AGTGCCATCCTCTCTGATCTCTTCATGATGTACT  1049
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTCATCCTTCCTAGAAGTGCCATCCTCTCTGATCTCTTCATGATGTACT  1049

seq1  AATTTACTGGACAA--TATACT--AGAGAGATG-ATTGCTCTAA  1088
      |||| |||||||||   |||||  ||||||||| ||||||||||
seq2  AATTAACTGGACAAATAATACTAGAGAGAGATGAATTGCTCTAA  1093


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