BAC Information

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BAC

Clone NameB6Ng01-240C20
Chromosome4 (Build37)
Map Location 65,555,038 - 65,724,278
singlet/doubletdoublet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240C20.bB6Ng01-240C20.g
ACCGA050412GA050413
length518791
definitionB6Ng01-240C20.b B6Ng01-240C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,555,038 - 65,555,554)(65,723,488 - 65,724,278)
sequence
ggaattctctgaaaatgaagacatcgtatttcatctacatcagatggtta
ccacaggtaacctggtatgattccatagccttttaagtagtctactgatg
tcatagttttatttaatttttttacctgctgttgagtgtgtgtgtatgtg
tgtgtgtggttgtggaggcccaaaatagatgttcaatatcttcattctcc
ctccatcttactcactgagtcaacatctcttgttgaacctgaagctccat
gtttggttaatctagctaaccagcttactgtgggaattcccttctctctc
ttccattcattgaaattacaggtggactgtaatgcccacctgtcatttta
tggaagatttggggatccaaatttggcttgtgctcaacctgttgcacaat
ctccccagcgcctcatgtccttaaagcaagaaagccccagcttgtgaatt
gccatcattgcttggtgtcttttcagtttggacagtttttcttactatac
tgctccgatggctttcat
gaattctgtctgaatcacgtataccatttaaatttactatttaaagcaga
gccgatcactttccttgctaaagaaggaaagggaaaaattgtaagtaaag
gaggtagagtcccaggtaggaagggcatggaatcagaatttcactataat
gggtatggctctaggggacaacagaaggtctgttatagttctggagccct
gcaatatttcccttttctctgttaccctaacacagcagatagtaggaagt
ggttgctcctggcccttgaagtgtcttcatcaaatgtcttcaattctctc
cagatgataaatcagtagatgaaaaattcctccttttcttctaccatttt
ttctttttctttttcttttgtctttatggcagtaaaagtattttgatgat
aactttcaaagccctgctagtcagaggacttttgttgttcagctacttcc
agaattccacagggtccctagtggctcctactcgaagctttctgatggac
tagttcatttggtaaagctgggatctccaactgcctccaagccctgctgg
tgtttttagttgaattgacaagatgtcctctcaggtcacgtgtaatgaca
catctgggagcaaaaatcaattgaggctagccttgtgacttttcattcat
gaaaatgctatcttagatagcttagtggtagatcatttcaacagcatgca
tgagacccagggttccatccccaccaatcccaaaaagacagaaaaaagaa
aatgctctgttattgagtgggtaggggagcaggggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65555038_65555554
seq2: B6Ng01-240C20.b_46_562

seq1  GAATTCTCTGAAAATGAAGACATCGTATTTCATCTACATCAGATGGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAAATGAAGACATCGTATTTCATCTACATCAGATGGTTAC  50

seq1  CACAGGTAACCTGGTATGATTCCATAGCCTTTTAAGTAGTCTACTGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTAACCTGGTATGATTCCATAGCCTTTTAAGTAGTCTACTGATGT  100

seq1  CATAGTTTTATTTAATTTTTTTACCTGCTGTTGAGTGTGTGTGTATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTTATTTAATTTTTTTACCTGCTGTTGAGTGTGTGTGTATGTGT  150

seq1  GTGTGTGGTTGTGGAGGCCCAAAATAGATGTTCAATATCTTCATTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTTGTGGAGGCCCAAAATAGATGTTCAATATCTTCATTCTCCC  200

seq1  TCCATCTTACTCACTGAGTCAACATCTCTTGTTGAACCTGAAGCTCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTACTCACTGAGTCAACATCTCTTGTTGAACCTGAAGCTCCATG  250

seq1  TTTGGTTAATCTAGCTAACCAGCTTACTGTGGGAATTCCCTTCTCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAATCTAGCTAACCAGCTTACTGTGGGAATTCCCTTCTCTCTCT  300

seq1  TCCATTCATTGAAATTACAGGTGGACTGTAATGCCCACCTGTCATTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCATTGAAATTACAGGTGGACTGTAATGCCCACCTGTCATTTTAT  350

seq1  GGAAGATTTGGGGATCCAAATTTGGCTTGTGCTCAACCTGTTGCACAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTTGGGGATCCAAATTTGGCTTGTGCTCAACCTGTTGCACAATC  400

seq1  TCCCCAGCGCCTCATGTCCTTAAAGCAAGAAAGCCCCAGCTTGTGAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCGCCTCATGTCCTTAAAGCAAGAAAGCCCCAGCTTGTGAATTG  450

seq1  CCATCATTGCTTGGTGTCTTTTCAGTTTGGACAGTTTTTCTTACTATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTGCTTGGTGTCTTTTCAGTTTGGACAGTTTTTCTTACTATACT  500

seq1  GCTCCGATGGCTTTCAT  517
      |||||||||||||||||
seq2  GCTCCGATGGCTTTCAT  517

seq1: chr4_65723488_65724278
seq2: B6Ng01-240C20.g_68_858 (reverse)

seq1  CCCCCTCCCCTGCTCCCCTACCCACTCAATAACAGAGCATTTTCTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCTGCTCCCCTACCCACTCAATAACAGAGCATTTTCTTTTTT  50

seq1  CTGTCTTTTTGGGATTGGTGGGGATGGAACCCTGGGTCTCATGCATGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTTTGGGATTGGTGGGGATGGAACCCTGGGTCTCATGCATGCTG  100

seq1  TTGAAATGATCTACCACTAAGCTATCTAAGATAGCATTTTCATGAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGATCTACCACTAAGCTATCTAAGATAGCATTTTCATGAATGAA  150

seq1  AAGTCACAAGGCTAGCCTCAATTGATTTTTGCTCCCAGATGTGTCATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAAGGCTAGCCTCAATTGATTTTTGCTCCCAGATGTGTCATTAC  200

seq1  ACGTGACCTGAGAGGACATCTTGTCAATTCAACTAAAAACACCAGCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACCTGAGAGGACATCTTGTCAATTCAACTAAAAACACCAGCAGGG  250

seq1  CTTGGAGGCAGTTGGAGATCCCAGCTTTACCAAATGAACTAGTCCATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGCAGTTGGAGATCCCAGCTTTACCAAATGAACTAGTCCATCAG  300

seq1  AAAGCTTCGAGTAGGAGCCACTAGGGACCCTGTGGAATTCTGGAAGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCGAGTAGGAGCCACTAGGGACCCTGTGGAATTCTGGAAGTAGC  350

seq1  TGAACAACAAAAGTCCTCTGACTAGCAGGGCTTTGAAAGTTATCATCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACAAAAGTCCTCTGACTAGCAGGGCTTTGAAAGTTATCATCAAA  400

seq1  ATACTTTTACTGCCATAAAGACAAAAGAAAAAGAAAAAGAAAAAATGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTACTGCCATAAAGACAAAAGAAAAAGAAAAAGAAAAAATGGTA  450

seq1  GAAGAAAAGGAGGAATTTTTCATCTACTGATTTATCATCTGGAGAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGGAGGAATTTTTCATCTACTGATTTATCATCTGGAGAGAATT  500

seq1  GAAGACATTTGATGAAGACACTTCAAGGGCCAGGAGCAACCACTTCCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATTTGATGAAGACACTTCAAGGGCCAGGAGCAACCACTTCCTAC  550

seq1  TATCTGCTGTGTTAGGGTAACAGAGAAAAGGGAAATATTGCAGGGCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTGTGTTAGGGTAACAGAGAAAAGGGAAATATTGCAGGGCTCCA  600

seq1  GAACTATAACAGACCTTCTGTTGTCCCCTAGAGCCATACCCATTATAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATAACAGACCTTCTGTTGTCCCCTAGAGCCATACCCATTATAGTG  650

seq1  AAATTCTGATTCCATGCCCTTCCTACCTGGGACTCTACCTCCTTTACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGATTCCATGCCCTTCCTACCTGGGACTCTACCTCCTTTACTTA  700

seq1  CAATTTTTCCCTTTCCTTCTTTAGCAAGGAAAGTGATCGGCTCTGCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTCCCTTTCCTTCTTTAGCAAGGAAAGTGATCGGCTCTGCTTTA  750

seq1  AATAGTAAATTTAAATGGTATACGTGATTCAGACAGAATTC  791
      |||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAATTTAAATGGTATACGTGATTCAGACAGAATTC  791