BAC Information

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BAC

Clone NameB6Ng01-240M22
Chromosome4 (Build37)
Map Location 76,552,170 - 76,553,270
singlet/doubletsinglet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240M22.bB6Ng01-240M22.g
ACCGA050880GA050881
length1,0291,099
definitionB6Ng01-240M22.b B6Ng01-240M22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagagatctttctgcctttgttaagcacaaaagataagctagttg
ggtgacaccctgccctgtagttaaccatttctgccctgactggggcctac
ctagttccattctcggctaatcctgaactcaagaatctatctgccttttt
aagcataaacaaaaaacttagctggatgagatctcttgagatcatgattc
cctaaatctcctccttttgtaatatatatatttgaattcatgtatttaga
gttattctttcccatagccttaagggctgtcctgaaggtcccagcattta
ccatttgctgagacatagccacaccctcaactcctgttcttgggctgttt
ctaattatcatggagtcattattgttaacaaggaggacattcctaggaag
ttaagagtcctttgctgctaatattggtttcagaaaatatgtaaattatt
gcacaaacaagtcttatgccacagcagccatcaacactttggaggcccat
accagggccctcttgcctccagagtactggcatcaaaggcaaatacccca
atgcccagctcaattctgtcttttgtttatgtcctacattaacactgaat
aaatattttcatcaagaaataataatatccacttcagaaaagtggaggaa
aaattgtgagagccaaataaacaagcagttggctgtaagattgtgtctcc
tagaaatgcttaggaagttacaccctaaaagtctcaacaacatgtctgag
taaacaagaggtgatgaagcatggcactattagacacactaacatggaaa
aaggaaaatctcacatatgctctccaaccctagtcaaagaactacagaca
actaaagaatgttgagggtgtgagagatagtctggcccacaggaaagaga
tttttaattggttagctaaaactaagtggttatacctgaaatcatgtata
tataaataatattataggagtgaacatgttgcattaacataatgaaatat
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcttaacacatctttctactggagccctagggaccaagactcaatc
tagaaatggactgttttggtagatagtacatttgccctgtacaataacta
gttctgtattattttgacttcacctggatatactacagaatgtaattaat
gtacaaacacagaaaaggaaacctgaccttggatacatccagcaaaggct
aaagtagtaccttgagaactgtctggtgatataatctatactctacctgc
atctgcctcttgctgttttagacaagagttgaatatatctgcctggtgtg
tgatgccttctgcatctctcagtgagaagaggtggataccaaactcttct
cagtagaaatgatttgctgagagaggtaggccatcaatttaggtaatctc
ttaaagggcttctactcagactatcatctctatgcacagacaatgacaac
ataataacatgcagcggtaagcagtaattaactacatcaaattacacaag
gcacttccagtatgtttctgtacatctgtagtcataaaatgtactgaagt
ttgattttatgtgttgattatttttattttggtacacaaaccaacataac
aactggaaataagacatttattaatttctttgtccattggcattttccat
ttactcaatatatttgaatgttaaaagtgtagatctattttggctagtta
agtgaggaaagatgctgttttactctaacaaataagagaaaaaaagttta
tttctcaataacatttcctggctattgtcagtgctgcataatttccacca
ttatttgtttgtttgaaggtagtagagatacgggcatgtgcattattaag
atagtctgaatatggtaattttcataatgagatttattgtatacacctcc
tggaataaaagcagaatgttctattttaagcatttaaattgctgtaggat
agtgagattccattattttaatggaacaaaatttgtattctgggtttatt
agaaactgaatgagctgaagaaacagtttgttctacatccctcatgtaac
gaggtgcctgggatatgaaacattagttttgtggtgtcatgccatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76552170_76553270
seq2: B6Ng01-240M22.g_66_1164

seq1  GAATTCTTAACACATCTTTCTACTGGAGCCCTAGGGACCAAGACTCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACACATCTTTCTACTGGAGCCCTAGGGACCAAGACTCAATC  50

seq1  TAGAAATGGACTGTTTTGGTAGATAGTACATTTGCCCTGTACAATAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGGACTGTTTTGGTAGATAGTACATTTGCCCTGTACAATAACTA  100

seq1  GTTCTGTATTATTTTGACTTCACCTGGATATACTACAGAATGTAATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTATTATTTTGACTTCACCTGGATATACTACAGAATGTAATTAAT  150

seq1  GTACAAACACAGAAAAGGAAACCTGACCTTGGATACATCCAGCAAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAACACAGAAAAGGAAACCTGACCTTGGATACATCCAGCAAAGGCT  200

seq1  AAAGTAGTACCTTGAGAACTGTCTGGTGATATAATCTATACTCTACCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTACCTTGAGAACTGTCTGGTGATATAATCTATACTCTACCTGC  250

seq1  ATCTGCCTCTTGCTGTTTTAGACAAGAGTTGAATATATCTGCCTGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTCTTGCTGTTTTAGACAAGAGTTGAATATATCTGCCTGGTGTG  300

seq1  TGATGCCTTCTGCATCTCTCAGTGAGAAGAGGTGGATACCAAACTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTTCTGCATCTCTCAGTGAGAAGAGGTGGATACCAAACTCTTCT  350

seq1  CAGTAGAAATGATTTGCTGAGAGAGGTAGGCCATCAATTTAGGTAATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAATGATTTGCTGAGAGAGGTAGGCCATCAATTTAGGTAATCTC  400

seq1  TTAAAGGGCTTCTACTCAGACTATCATCTCTATGCACAGACAATGACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGGCTTCTACTCAGACTATCATCTCTATGCACAGACAATGACAAC  450

seq1  ATAATAACATGCAGCGGTAAGCAGTAATTAACTACATCAAATTACACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACATGCAGCGGTAAGCAGTAATTAACTACATCAAATTACACAAG  500

seq1  GCACTTCCAGTATGTTTCTGTACATCTGTAGTCATAAAATGTACTGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCCAGTATGTTTCTGTACATCTGTAGTCATAAAATGTACTGAAGT  550

seq1  TTGATTTTATGTGTTGATTATTTTTATTTTGGTACACAAACCAACATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTATGTGTTGATTATTTTTATTTTGGTACACAAACCAACATAAC  600

seq1  AACTGGAAATAAGACATTTATTAATTTCTTTGTCCATTGGCATTTTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAATAAGACATTTATTAATTTCTTTGTCCATTGGCATTTTCCAT  650

seq1  TTACTCAATATATTTGAATGTTAAAAGTGTAGATCTATTTTGGCTAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAATATATTTGAATGTTAAAAGTGTAGATCTATTTTGGCTAGTTA  700

seq1  AGTGAGGAAAGATGCTGTTTTACTCTAACAAATAAGAGAAAAAAAGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAAAGATGCTGTTTTACTCTAACAAATAAGAGAAAAAAAGTTTA  750

seq1  TTTCTCAATAACATTTCCTGGCTATTGTCAGTGCTGCATAATTTCCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAATAACATTTCCTGGCTATTGTCAGTGCTGCATAATTTCCACCA  800

seq1  TTATTTGTTTGTTTGAAGGTAGTAGAGATACGGGCATGTGCATTATTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTGTTTGAAGGTAGTAGAGATACGGGCATGTGCATTATTAAG  850

seq1  ATAGTCTGAATATGGTAATTTTCATAATGAGATTTATTGTATACACCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTGAATATGGTAATTTTCATAATGAGATTTATTGTATACACCTCC  900

seq1  TGGAATAAAAAGCAGAATGTTCTATTTTAAAGCATTTAAATTGCTGTAGG  950
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGAAT-AAAAGCAGAATGTTCTATTTT-AAGCATTTAAATTGCTGTAGG  948

seq1  ATAGTGAGATTCCATTATTTTTAATGGAACAAAATTTGTATTCTGGGTTT  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAGTGAGATTCCATTA-TTTTAATGGAACAAAATTTGTATTCTGGGTTT  997

seq1  ATTAGAAACTGAATGAGCTGAAGAAACAAGTTTGTTCTTACATCCCTCAT  1050
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  ATTAGAAACTGAATGAGCTGAAGAAAC-AGTTTGTTC-TACATCCCTCAT  1045

seq1  GTAACGAGGTGGCTGGGATATGAAACATTTAGTTTTGTGGTGTCA----A  1096
      ||||||||||| ||||||||||||||| |||||||||||||||||    |
seq2  GTAACGAGGTGCCTGGGATATGAAACA-TTAGTTTTGTGGTGTCATGCCA  1094

seq1  TGCAT  1101
      |||||
seq2  TGCAT  1099