BAC Information

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BAC

Clone NameB6Ng01-242G02
Chromosome4 (Build37)
Map Location 4,852,489 - 5,011,796
singlet/doubletdoublet
Overlap geneLOC100039338
Upstream genePlag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019, Impad1
Downstream gene1700012H17Rik, LOC669309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242G02.bB6Ng01-242G02.g
ACCGA052040GA052041
length1,1071,147
definitionB6Ng01-242G02.b B6Ng01-242G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,010,690 - 5,011,796)(4,852,489 - 4,853,622)
sequence
gaattcattactgaaattttcatgtctcctcacatatgcccccaaggtga
tgtccctttcagagttttctatcaccatttagaagattcctgatgtagtt
caaattttcacagtctgtcatttcaaaattgagtattgttttaactcatg
atttgtttagaatgtttcgaattttccagctgagagatggctcagcagtt
aagcctgtacactgctcttacagaaggaccaagttccgtttctagcactt
gagtcaggtggcttacaactgtttgctacttcagatccatggaatctgga
gccttcttgcttctatgggtattatattcatatatgtgtatacacacaca
gacccacagacacacacacacacacacacacacacttaaaagtaaacaca
agcctttaatcccagcactcaggaggcagaggaggtcagatctctgtgag
ttctaagtcagccttgtcacacggtcagtttcaggatagccagagctaca
tagtgagaccctgtctcaaaaacaaaaaacaaaatgaaaaaccaagaaaa
aaattaagctgagttgtaaatatggcattgctgtttatctatcttgcaat
aattaattttaaacaaaatgaacttattgtgtgtatgtgtatgaggtatt
gattctctttctcaaccatgtgtatttgaggggttatgctcatgtcagtc
ttggtgacaaggacaagcttcactagccctgaaccatctaactagctttc
aaatatttaactacatttcattgtcaacaaggtgaacagtttctataact
tctaccctaaaagacatggacattttcttctgctctacttgttgtctgtt
aagatgtatattcttgaagtgttcaacaaggaatgataccctcgtttgtt
cagtgtaggtgtctacagctttgttttgagaggggaactcactgtgtaag
tccagctgggtctgggaacttactacatagatcagctggccctcaagctc
acagaatctgagtgccttctgcctttcagtatgggattaaagaatgtgct
caatatttctacacttgacttatgcctagtatttaccctctgtagtagtg
cctcaca

gaattcctacttggctgcactgtaaaatggttttccttctcacaatagta
aggtctgtgtgcacactggtgccgtggcatgcacacacacatgtagaaga
tagagaacaatgtttatgagtctgttctttctttccaccacgggttcaga
ggatcatcctcagggcctccggattgtccaacatgtattttttttcctat
caatacattcttgctggcccacacagccattttctatgctgctagactct
gctaagatcttctggagtttttagtatcactgtatgcagggaacattggc
ctatggggtccctttgttcagttttgttaaaaagatcatgctagtcttca
ctgaatggttaagggttttttttttttttcccttcactcctttatttgag
aagaaattgagaagaactgatcttggttattctttaaatgactggtatat
agttcaatagtgaaactgacttgcttttgactttacagatttttttaaca
ttgcttttgttcttagatttttttcttttcaagacaggttttctctgtgc
agccctgactgtcctgaaactggctctgtagaccaggttggcctccaact
tagagatccacctacctctgcctctaaattaaaggccctgcaactttgta
gatcttaaaagctgacatttaagtattgtgcacatgctcctccaggggca
gagaacaagttgctggagtcagttttcccttgctgggaactgaggattag
tgtcaactgcctttacctgctgagctcttgtgccagcatggcagtttttt
ttttttgttttgctttgctttaaaattacacactctgcttttgaaaggcc
aaatcttttaagttcagacttcattttagagaacctgacctaagtttgaa
ctcaggtagactaacaggctggtacctagcattaatttccaagttggccc
ccaataaaaccagagcttaattcaatctttaagctaatcccaacaagcct
gcaacccccagggtacaaaactcacccctgccctaatgacaccaatgcag
agggggaacagaaattaaggttatggatgtgacctcccagccacccaggc
ttccaaggcattatggttggagggctacaggatgagctttccaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_5010690_5011796
seq2: B6Ng01-242G02.b_46_1152 (reverse)

seq1  TGTGAGGCACTACTACAGA-GGTAATAACTA-GCATAAGTTCAAGTTGTA  48
      ||||||||||||||||||| |||||  |||| ||||||| ||||| ||||
seq2  TGTGAGGCACTACTACAGAGGGTAAATACTAGGCATAAG-TCAAG-TGTA  48

seq1  GAAATATTGAACCACATTCTTTAATCCCAATACCTGAAAGGCAG-AGGCA  97
      ||||||||| | |||||||||||||||| ||| ||||||||||| |||||
seq2  GAAATATTG-AGCACATTCTTTAATCCC-ATA-CTGAAAGGCAGAAGGCA  95

seq1  CTCAGATTTCTGTGAGCTTGA-GGCCAGCCTGATCTATGTAGTAAGTT-C  145
      |||||| |||||||||||||| |||||| ||||||||||||||||||| |
seq2  CTCAGA-TTCTGTGAGCTTGAGGGCCAG-CTGATCTATGTAGTAAGTTCC  143

seq1  CAGA-CCAGCTGGACTTACACAGTGAGTTCCCCTCTCAAAACAAAGCTGT  194
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAGCTGGACTTACACAGTGAGTTCCCCTCTCAAAACAAAGCTGT  193

seq1  AGACACCTACACTGAACAAACGAGGGTATCATTCC-TGTTGAACACTTCA  243
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGACACCTACACTGAACAAACGAGGGTATCATTCCTTGTTGAACACTTCA  243

seq1  AGAATATACATCTTAACAGACAACAAGTAGAGCAGAAGAAAATGTCCATG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATACATCTTAACAGACAACAAGTAGAGCAGAAGAAAATGTCCATG  293

seq1  TCTTTTAGGGTAGAAGTTATAGAAACTGTTCACCTTGTTGACAATGAAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGGGTAGAAGTTATAGAAACTGTTCACCTTGTTGACAATGAAAT  343

seq1  GTAGTTAAATATTTGAAAGCTAGTTAGATGGTTCAGGGCTAGTGAAGCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAAATATTTGAAAGCTAGTTAGATGGTTCAGGGCTAGTGAAGCTT  393

seq1  GTCCTTGTCACCAAGACTGACATGAGCATAACCCCTCAAATACACATGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTCACCAAGACTGACATGAGCATAACCCCTCAAATACACATGGT  443

seq1  TGAGAAAGAGAATCAATACCTCATACACATACACACAATAAGTTCATTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGAGAATCAATACCTCATACACATACACACAATAAGTTCATTTT  493

seq1  GTTTAAAATTAATTATTGCAAGATAGATAAACAGCAATGCCATATTTACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAATTAATTATTGCAAGATAGATAAACAGCAATGCCATATTTACA  543

seq1  ACTCAGCTTAATTTTTTTCTTGGTTTTTCATTTTGTTTTTTGTTTTTGAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTTAATTTTTTTCTTGGTTTTTCATTTTGTTTTTTGTTTTTGAG  593

seq1  ACAGGGTCTCACTATGTAGCTCTGGCTATCCTGAAACTGACCGTGTGACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTCACTATGTAGCTCTGGCTATCCTGAAACTGACCGTGTGACA  643

seq1  AGGCTGACTTAGAACTCACAGAGATCTGACCTCCTCTGCCTCCTGAGTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACTTAGAACTCACAGAGATCTGACCTCCTCTGCCTCCTGAGTGC  693

seq1  TGGGATTAAAGGCTTGTGTTTACTTTTAAGTGTGTGTGTGTGTGTGTGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCTTGTGTTTACTTTTAAGTGTGTGTGTGTGTGTGTGTG  743

seq1  TGTGTCTGTGGGTCTGTGTGTGTATACACATATATGAATATAATACCCAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTGGGTCTGTGTGTGTATACACATATATGAATATAATACCCAT  793

seq1  AGAAGCAAGAAGGCTCCAGATTCCATGGATCTGAAGTAGCAAACAGTTGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGAAGGCTCCAGATTCCATGGATCTGAAGTAGCAAACAGTTGT  843

seq1  AAGCCACCTGACTCAAGTGCTAGAAACGGAACTTGGTCCTTCTGTAAGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCTGACTCAAGTGCTAGAAACGGAACTTGGTCCTTCTGTAAGAG  893

seq1  CAGTGTACAGGCTTAACTGCTGAGCCATCTCTCAGCTGGAAAATTCGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACAGGCTTAACTGCTGAGCCATCTCTCAGCTGGAAAATTCGAAA  943

seq1  CATTCTAAACAAATCATGAGTTAAAACAATACTCAATTTTGAAATGACAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAAACAAATCATGAGTTAAAACAATACTCAATTTTGAAATGACAG  993

seq1  ACTGTGAAAATTTGAACTACATCAGGAATCTTCTAAATGGTGATAGAAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAAATTTGAACTACATCAGGAATCTTCTAAATGGTGATAGAAAA  1043

seq1  CTCTGAAAGGGACATCACCTTGGGGGCATATGTGAGGAGACATGAAAATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGGGACATCACCTTGGGGGCATATGTGAGGAGACATGAAAATT  1093

seq1  TCAGTAATGAATTC  1107
      ||||||||||||||
seq2  TCAGTAATGAATTC  1107


seq1: chr4_4852489_4853622
seq2: B6Ng01-242G02.g_64_1210

seq1  GAATTCCTACTTGGCTGCACTGTAAAATGGTTTTCCTTCTCACAATAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTTGGCTGCACTGTAAAATGGTTTTCCTTCTCACAATAGTA  50

seq1  AGGTCTGTGTGCACACTGGTGCCGTGGCATGCACACACACATGTAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTGTGCACACTGGTGCCGTGGCATGCACACACACATGTAGAAGA  100

seq1  TAGAGAACAATGTTTATGAGTCTGTTCTTTCTTTCCACCACGGGTTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAACAATGTTTATGAGTCTGTTCTTTCTTTCCACCACGGGTTCAGA  150

seq1  GGATCATCCTCAGGGCCTCCGGATTGTCCAACATGTATTTTTTTTCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATCCTCAGGGCCTCCGGATTGTCCAACATGTATTTTTTTTCCTAT  200

seq1  CAATACATTCTTGCTGGCCCACACAGCCATTTTCTATGCTGCTAGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATTCTTGCTGGCCCACACAGCCATTTTCTATGCTGCTAGACTCT  250

seq1  GCTAAGATCTTCTGGAGTTTTTAGTATCACTGTATGCAGGGAACATTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGATCTTCTGGAGTTTTTAGTATCACTGTATGCAGGGAACATTGGC  300

seq1  CTATGGGGTCCCTTTGTTCAGTTTTGTTAAAAAGATCATGCTAGTCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGGTCCCTTTGTTCAGTTTTGTTAAAAAGATCATGCTAGTCTTCA  350

seq1  CTGAATGGTTAAGGGTTTTTTTTTTTTTTCCCTTCACTCCTTTATTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGTTAAGGGTTTTTTTTTTTTTTCCCTTCACTCCTTTATTTGAG  400

seq1  AAGAAATTGAGAAGAACTGATCTTGGTTATTCTTTAAATGACTGGTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTGAGAAGAACTGATCTTGGTTATTCTTTAAATGACTGGTATAT  450

seq1  AGTTCAATAGTGAAACTGACTTGCTTTTGACTTTACAGATTTTTTTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATAGTGAAACTGACTTGCTTTTGACTTTACAGATTTTTTTAACA  500

seq1  TTGCTTTTGTTCTTAGATTTTTTTCTTTTCAAGACAGGTTTTCTCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGTTCTTAGATTTTTTTCTTTTCAAGACAGGTTTTCTCTGTGC  550

seq1  AGCCCTGACTGTCCTGAAACTGGCTCTGTAGACCAGGTTGGCCTCCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGACTGTCCTGAAACTGGCTCTGTAGACCAGGTTGGCCTCCAACT  600

seq1  TAGAGATCCACCTACCTCTGCCTCTAAATTAAAGGCCCTGCAACTTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATCCACCTACCTCTGCCTCTAAATTAAAGGCCCTGCAACTTTGTA  650

seq1  GATCTTAAAAGCTGACATTTAAGTATTGTGCACATGCTCCTCCAGGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAAAAGCTGACATTTAAGTATTGTGCACATGCTCCTCCAGGGGCA  700

seq1  GAGAACAAGTTGCTGGAGTCAGTTTTCCCTTGCTGGGAACTGAGGATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAGTTGCTGGAGTCAGTTTTCCCTTGCTGGGAACTGAGGATTAG  750

seq1  TGTCAACTGCCTTTACCTGCTGAGCTCTTGTGCCAGCATGGCAG-TTTTT  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTCAACTGCCTTTACCTGCTGAGCTCTTGTGCCAGCATGGCAGTTTTTT  800

seq1  TTTTTTGTTTTGCTTTGCTTTAAAATTACACACTCTGCTTTTGAAAGGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTGCTTTGCTTTAAAATTACACACTCTGCTTTTGAAAGGCC  850

seq1  AAATCTTTTAAGTTCAGACTTCATTTTAGAGAACCTGACCTAAGTTTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTAAGTTCAGACTTCATTTTAGAGAACCTGACCTAAGTTTGAA  900

seq1  CTCAGGTAGACTAACAGGCTGGTACCTAGCATTAATTTCCAAGTTGCCCC  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCAGGTAGACTAACAGGCTGGTACCTAGCATTAATTTCCAAGTTGGCCC  950

seq1  CCAATAAAACCAGAGCTTAATTCCAATCTTTAGGCTAATCCCAACAAGCC  999
      |||||||||||||||||||||| ||||||||| ||||||||||||||| |
seq2  CCAATAAAACCAGAGCTTAATT-CAATCTTTAAGCTAATCCCAACAAG-C  998

seq1  CTGC-ACCCCCAGGTTAC-AAACTCACCCCTG-CCTAATGACCACCAATG  1046
      |||| ||||||||| ||| ||||||||||||| |||||||| ||||||||
seq2  CTGCAACCCCCAGGGTACAAAACTCACCCCTGCCCTAATGA-CACCAATG  1047

seq1  CAGA-GGGGAACAGAAATTAAGTTTAT-GATGTGA-CTCCCAGC--ACCA  1091
      |||| ||||||||||||||||| |||| ||||||| ||||||||   |||
seq2  CAGAGGGGGAACAGAAATTAAGGTTATGGATGTGACCTCCCAGCCACCCA  1097

seq1  G--CTCCAGCCAATTATG--TTGAAGGCTACAG---TAGCTTTCCAATTA  1134
      |   ||||    ||||||  | || ||||||||    |||||||||||||
seq2  GGCTTCCAAGGCATTATGGTTGGAGGGCTACAGGATGAGCTTTCCAATTA  1147


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