BAC Information

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BAC

Clone NameB6Ng01-242H08
Chromosome4 (Build37)
Map Location 25,248,156 - 25,453,831
singlet/doubletdoublet
Overlap geneLOC665019
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2
Downstream geneLOC625732, Fut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242H08.bB6Ng01-242H08.g
ACCGA052094GA052095
length1,1161,138
definitionB6Ng01-242H08.b B6Ng01-242H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,248,156 - 25,249,246)(25,452,683 - 25,453,831)
sequence
gaattcttcacactgcaccttctggaactatgaaaactagctaggaaggc
caaagtttctagttccattccagcttgatttttctatattgtttgtccaa
atataggatgcattcatcaataatgtcctttttaaaaggaagatatttat
aaatatttctaattttctctctcagaatgtttgtgtttgttgtgtgttgt
gtgcatgtgagttagaggttagaggcattagatcacctggagctggagtt
acgggcagatgtgaactgccttatataaattctaggaaatgaattctggt
cctttgcaagtaagtgctcttaactgctaagcaacctctccagcccagca
ataaactgcatctcatatctagaactggcggggctgtccaaaagaatgac
aagagcctatattacatggtgtacttctgggggctccctgaacaacatcg
tagaaggacatctaatcacatacctgacacttgggtttttgtttaataac
atgtggcttctgggaacagtaaaattctattattctaataatagaatgat
aattctattattatttctttgttgttgttatgtttcttaatttcgttata
caccagtagaaaacagtatctctaatagagaataatatctagaatatgta
aataacctcaaagcaaaacaccaagaaaacagataatctaataaaaatgg
gatatatgtctgaatggaaaattttcagaagaaatacaaatagctaggaa
acaaacactttgaaaatgtccagcatcagtagtcaacaggaaaatgcata
ttacattacgctgatgttctacctcaccccagtctgaatgagtgccatga
agaaatcaaatgacagcatataacaggaaagagggatccttatttaccag
tgatgtgagtgcaaactggtacagctactatgcaaatcattttagagacc
tctaagagacagagatggaattgcttgtttgaagtagctgtactagttct
gtgcttactcaaagattctacatactttcttagaaagaatacctggccca
ttctatgtcattggtgcttatttcaataatagggaaatgagtagctagat
attcatcaacttatga

gaattcattcactgcagggtcttataaggagcatgtcccctgtgacaatt
aagacattcttgactgaacgaaaacacgagaaaaacatgccgagcttcat
gttaaggacacaattctaccctcattttcagttttaccacgtttaaaagc
taatctaatgggaggacagtatctacattaacaatgtttatttcatcatt
tgcaatccaacaccaatatttcacactaacatgggaaggaaaatgcaaat
gagcaaagcaagacagatacatgatctgggccaacagaaggaagaggaaa
ggtgggtggccagggaaggcaactccccagagtctggagcattgtgacca
tatctctcatgaacagatctggaaaggtcagagcattaatcctgaggctc
ccctgtggactcatttctgtgtgcctattttcttccactgtcaagtcttc
aattccaaatgcataaagagaaaaaaagcaattaccaagagaaaatgaga
acagcactaactgttgttttcctttgattggtggctctatgccactcagt
tatttttagctatcagcttgaagatactgacttcacttccacaactgcta
atcagcatacttttctcttgtggttctaatactgtaaatatgacacacag
acaatgtttggaaatgtatataataatgaatattaatttatatacaaaat
actctaactcaaatcagcctaaagtttgctgtaatgaattgagttcacgt
gatggctaatgacaatgatgacttccttacttcatgaatcacttagctcc
ttaaactcccccagtattgatccaagtgaattttaaatcaactatgagtt
ctgttttgaatgagattaacatgagtattatcttgaatgctgaaggagta
ctgtgataattattatataaattttctgtttccacattgagctaaacatt
ccttaattgtcattttagcaagaatatgagtcaaatgctaaactctgtaa
gctctgtttaaaccattttcttctttgaacatacaaatgcaattatttca
agtagaattaaccaaaaaaataataaaaataggtccacatttcatcagaa
aaaacctagctaccagtctaggaaactagagtcatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25248156_25249246
seq2: B6Ng01-242H08.b_71_1163

seq1  GGAACTATGAAAACTAGCTAGGAAGGCCAAAGTTTCTAGTTCCATTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTATGAAAACTAGCTAGGAAGGCCAAAGTTTCTAGTTCCATTCCAG  50

seq1  CTTGATTTTTCTATATTGTTTGTCCAAATATAGGATGCATTCATCAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTTTCTATATTGTTTGTCCAAATATAGGATGCATTCATCAATAA  100

seq1  TGTCCTTTTTAAAAGGAAGATATTTATAAATATTTCTAATTTTCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTTAAAAGGAAGATATTTATAAATATTTCTAATTTTCTCTCTC  150

seq1  AGAATGTTTGTGTTTGTTGTGTGTTGTGTGCATGTGAGTTAGAGGTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTGTGTTTGTTGTGTGTTGTGTGCATGTGAGTTAGAGGTTAGA  200

seq1  GGCATTAGATCACCTGGAGCTGGAGTTACGGGCAGATGTGAACTGCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGATCACCTGGAGCTGGAGTTACGGGCAGATGTGAACTGCCTTA  250

seq1  TATAAATTCTAGGAAATGAATTCTGGTCCTTTGCAAGTAAGTGCTCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTCTAGGAAATGAATTCTGGTCCTTTGCAAGTAAGTGCTCTTAA  300

seq1  CTGCTAAGCAACCTCTCCAGCCCAGCAATAAACTGCATCTCATATCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGCAACCTCTCCAGCCCAGCAATAAACTGCATCTCATATCTAGA  350

seq1  ACTGGCGGGGCTGTCCAAAAGAATGACAAGAGCCTATATTACATGGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGGGGCTGTCCAAAAGAATGACAAGAGCCTATATTACATGGTGTA  400

seq1  CTTCTGGGGGCTCCCTGAACAACATCGTAGAAGGACATCTAATCACATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGGGCTCCCTGAACAACATCGTAGAAGGACATCTAATCACATAC  450

seq1  CTGACACTTGGGTTTTTGTTTAATAACATGTGGCTTCTGGGAACAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTTGGGTTTTTGTTTAATAACATGTGGCTTCTGGGAACAGTAAA  500

seq1  ATTCTATTATTCTAATAATAGAATGATAATTCTATTATTATTTCTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTATTCTAATAATAGAATGATAATTCTATTATTATTTCTTTGTT  550

seq1  GTTGTTATGTTTCTTAATTTCGTTATACACCAGTAGAAAACAGTATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATGTTTCTTAATTTCGTTATACACCAGTAGAAAACAGTATCTCT  600

seq1  AATAGAGAATAATATCTAGAATATGTAAATAACCTCAAAGCAAAACACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAATAATATCTAGAATATGTAAATAACCTCAAAGCAAAACACCA  650

seq1  AGAAAACAGATAATCTAATAAAAATGGGATATATGTCTGAATGGAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGATAATCTAATAAAAATGGGATATATGTCTGAATGGAAAATT  700

seq1  TTCAGAAGAAATACAAATAGCTAGGAAACAAACACTTTGAAAATGTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGAAATACAAATAGCTAGGAAACAAACACTTTGAAAATGTCCAG  750

seq1  CATCAGTAGTCAACAGGAAAATGCATATTACATTACGCTGATGTTCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAGTCAACAGGAAAATGCATATTACATTACGCTGATGTTCTACC  800

seq1  TCACCCCAGTCTGAATGAGTGCCATGAAGAAATCAAATGACAGCATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCAGTCTGAATGAGTGCCATGAAGAAATCAAATGACAGCATATAA  850

seq1  CAGGAAAGAGGGATCCTTATTTACCAGTGATGTGAGTGCAAACTGGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGAGGGATCCTTATTTACCAGTGATGTGAGTGCAAACTGGTACA  900

seq1  GCTACTATGCAAATCATTTTAGAGACCTCTAAGAGACAGAGATGGAATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTATGCAAATCATTTTAGAGACCTCTAAGAGACAGAGATGGAATTG  950

seq1  C-TGTTTGAAGTAGCTGTACTAGTTCTGTGCTTACTCAAAGGATTCTACA  999
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTGTTTGAAGTAGCTGTACTAGTTCTGTGCTTACTCAAA-GATTCTACA  999

seq1  TACTT--CTAGAAAG-ATACCT-GCCCA-TCTATGTTCATT-GTGCTATT  1043
      |||||   ||||||| |||||| ||||| |||||| ||||| |||||  |
seq2  TACTTTCTTAGAAAGAATACCTGGCCCATTCTATG-TCATTGGTGCTTAT  1048

seq1  TTCAATAATTAGGAAATGGAAGTAGCCTAGATATTCATCAACTTATGA  1091
      |||||||||  |||||||  ||||| ||||||||||||||||||||||
seq2  TTCAATAATAGGGAAATG--AGTAG-CTAGATATTCATCAACTTATGA  1093


seq1: chr4_25452683_25453831
seq2: B6Ng01-242H08.g_68_1205 (reverse)

seq1  AAAATGACTTCTAGTTTCTCCTAGAAACTTGGTAGCTA-GTTTTTTCTGA  49
      |||||||| |||||||  |||||||    ||||||||| |||||||||| 
seq2  AAAATGAC-TCTAGTT--TCCTAGA---CTGGTAGCTAGGTTTTTTCTG-  43

seq1  ATGGAAAATGTGGACCTTATTTTTATTTATTTTTTTGTTTTATTTCTACT  99
      |||  ||||||||||| |||||||| |||||||||||  ||| |||||||
seq2  ATG--AAATGTGGACC-TATTTTTA-TTATTTTTTTG-GTTAATTCTACT  88

seq1  TGAAATTAAATTGCATTTGTATGTTCAAAGAAGAAATGGTTTTAAACAGA  149
      ||||||  ||||||||||||||||||||||||||||  | ||||||||||
seq2  TGAAAT--AATTGCATTTGTATGTTCAAAGAAGAAAATGGTTTAAACAGA  136

seq1  GCTTACAGAGTTTAGCATTTGACTCATATTCTTGCTAAAATGACAATTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGAGTTTAGCATTTGACTCATATTCTTGCTAAAATGACAATTAA  186

seq1  GGAATGTTTAGCTCAATGTGGAAACAGAAAATTTATATAATAATTATCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTTAGCTCAATGTGGAAACAGAAAATTTATATAATAATTATCAC  236

seq1  AGTACTCC-TCAGCATTCAAGATAATACTCATGTTAATCTCATTCAAAAC  298
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCCTTCAGCATTCAAGATAATACTCATGTTAATCTCATTCAAAAC  286

seq1  AGAACTCATAGTTGATTTAAAATTCACTTGGATCAATACTGGGGGAGTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCATAGTTGATTTAAAATTCACTTGGATCAATACTGGGGGAGTTT  336

seq1  AAGGAGCTAAGTGATTCATGAAGTAAGGAAGTCATCATTGTCATTAGCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTAAGTGATTCATGAAGTAAGGAAGTCATCATTGTCATTAGCCA  386

seq1  TCACGTGAACTCAATTCATTACAGCAAACTTTAGGCTGATTTGAGTTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGAACTCAATTCATTACAGCAAACTTTAGGCTGATTTGAGTTAGA  436

seq1  GTATTTTGTATATAAATTAATATTCATTATTATATACATTTCCAAACATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTATATAAATTAATATTCATTATTATATACATTTCCAAACATT  486

seq1  GTCTGTGTGTCATATTTACAGTATTAGAACCACAAGAGAAAAGTATGCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGTCATATTTACAGTATTAGAACCACAAGAGAAAAGTATGCTG  536

seq1  ATTAGCAGTTGTGGAAGTGAAGTCAGTATCTTCAAGCTGATAGCTAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGTTGTGGAAGTGAAGTCAGTATCTTCAAGCTGATAGCTAAAAA  586

seq1  TAACTGAGTGGCATAGAGCCACCAATCAAAGGAAAACAACAGTTAGTGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGTGGCATAGAGCCACCAATCAAAGGAAAACAACAGTTAGTGCT  636

seq1  GTTCTCATTTTCTCTTGGTAATTGCTTTTTTTCTCTTTATGCATTTGGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATTTTCTCTTGGTAATTGCTTTTTTTCTCTTTATGCATTTGGAA  686

seq1  TTGAAGACTTGACAGTGGAAGAAAATAGGCACACAGAAATGAGTCCACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACTTGACAGTGGAAGAAAATAGGCACACAGAAATGAGTCCACAG  736

seq1  GGGAGCCTCAGGATTAATGCTCTGACCTTTCCAGATCTGTTCATGAGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTCAGGATTAATGCTCTGACCTTTCCAGATCTGTTCATGAGAGA  786

seq1  TATGGTCACAATGCTCCAGACTCTGGGGAGTTGCCTTCCCTGGCCACCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCACAATGCTCCAGACTCTGGGGAGTTGCCTTCCCTGGCCACCCA  836

seq1  CCTTTCCTCTTCCTTCTGTTGGCCCAGATCATGTATCTGTCTTGCTTTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTCTTCCTTCTGTTGGCCCAGATCATGTATCTGTCTTGCTTTGC  886

seq1  TCATTTGCATTTTCCTTCCCATGTTAGTGTGAAATATTGGTGTTGGATTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCATTTTCCTTCCCATGTTAGTGTGAAATATTGGTGTTGGATTG  936

seq1  CAAATGATGAAATAAACATTGTTAATGTAGATACTGTCCTCCCATTAGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATGAAATAAACATTGTTAATGTAGATACTGTCCTCCCATTAGAT  986

seq1  TAGCTTTTAAACGTGGTAAAACTGAAAATGAGGGTAGAATTGTGTCCTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTAAACGTGGTAAAACTGAAAATGAGGGTAGAATTGTGTCCTTA  1036

seq1  ACATGAAGCTCGGCATGTTTTTCTCGTGTTTTCGTTCAGTCAAGAATGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGCTCGGCATGTTTTTCTCGTGTTTTCGTTCAGTCAAGAATGTC  1086

seq1  TTAATTGTCACAGGGGACATGCTCCTTATAAGACCCT-CAGTGAATGAAT  1147
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAATTGTCACAGGGGACATGCTCCTTATAAGACCCTGCAGTGAATGAAT  1136

seq1  TC  1149
      ||
seq2  TC  1138


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