BAC Information

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BAC

Clone NameB6Ng01-242I18
Chromosome4 (Build37)16 (Build37)
Map Location 37,465,189 - 37,466,23161,274,390 - 61,274,906
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242I18.bB6Ng01-242I18.g
ACCGA052162GA052163
length1,051951
definitionB6Ng01-242I18.b B6Ng01-242I18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,465,189 - 37,466,231)(61,274,390 - 61,274,906)
sequence
gaattcaacataaaaaagatacaccgaatctaataaaagagaaagtggga
aagacaattgaactcatcggcacagggggaaatttcctaaacaaactcca
tggttcattttctaagatcaaggacactgtcaatagtacaaatcagcaaa
ctaaaactgagaaaaaaaatcctcactaatcccacatccaatagagggct
aatatccaaaatatatgaagaactcaagaatctaaccaccaaagaaagaa
acaacccaataaaaaaagatggggtaaagccgggcatggtggtgcatgcc
tttaatcccagcactcaggaggcagaggcagatggatttctgagtttgag
gccagcctggtctacaaagtgagttccaggacaaccagggctatacagag
aaaccctgtctcaaaaaaacaaacaaaacaaaacaaaagaaattctttca
gctcatccatctagataaagcccattgttacctgcagtgggggcaggaac
tcaagggagagttcatggaggaactttgtatactggatgagctcttccac
agcaatccttttttataaattagatattttctttatttacatttcaaatg
ttatcccccaccctccctgcccctgtttgccaacccacccactcctggct
cccctgtcctggcattcccctacattgggacattgagccttcacaggaca
aagggcctctcctcctattgattactaacaaggccatcctcaactgcata
tgcttctggagccatggatccctacatgtgtactctttgcatgctggcgc
taaggctgttccacacagcctgctgcacacaggtcctgccaggagagagc
tgacctccaagaaaggctaacacaggcttttcagatccatagtagggaca
atttccagccagatacagcaagaccaactaataccagagattaacagata
gtggaaaagaaactacaggaatcctcaagatcagaaaccaaggtgagttg
ggcatcatcaagaaccccagttcctctcaccacagcaaattcctggatgc
c

gaattcctcttgcagtattttatctttgatgactatgaagtgcccctcct
tgtcttttttgataactttgggtttgaactcaattttattagatattaga
atggcttctcagacttgtttcttcagaccatttccttggaaaattctttt
cctacctttcactctgaggtagtatctgtctttttccctctgatgggttt
cctgtaagcagcaaaatgttgggtcctgtttgtgtagccagtctgttatt
ctatgtcttttttattgggaaattgagtccattgatagtaagagatatta
aggaaaagtgattgttgcttccaattatttttgttgttagagttggcatt
ctgttcttgtggctttcttcttttaggtttgttgaagaattactttcttc
ctttttctaggacgtggtttctgtgcttgtattgttttttttttttgttg
ttgttgttgttttgtttttgttttttttttctgttattatcctttgaatg
gctggattcgtggaaaaataatgtgtgaatttgtttttgtcatggaatac
tttggtttctctatggtaattgaaagtttggctgggtatagtagcctggg
ctgacatttgtgttctcttagtgtctgtataacatctgtccaggatcttc
tggctttcatagactctggtgataaatctggtgtacttctgataggcctg
ccctttatatgttacttgaccttttttcccttactgctttttagtattct
atctttatttagtgcatttgttgttctgattattatgtgtcgggaggaat
ttcttttctggtccagtctatttggagttctgtaagccttcttgtatgtc
atggccatctctttctttaggttggggaagtttcttatattatttgtgaa
gaatttgctggcccttgagttgaaaaccttcattccaatctactcctatt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_37465189_37466231
seq2: B6Ng01-242I18.b_49_1099

seq1  GAATTCAACATAAAAAAGATACACCGAATCTAATAAAAGAGAAAGTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATAAAAAAGATACACCGAATCTAATAAAAGAGAAAGTGGGA  50

seq1  AAGACAATTGAACTCATCGGCACAGGGGGAAATTTCCTAAACAAACTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATTGAACTCATCGGCACAGGGGGAAATTTCCTAAACAAACTCCA  100

seq1  TGGTTCATTTTCTAAGATCAAGGACACTGTCAATAGTACAAATCAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATTTTCTAAGATCAAGGACACTGTCAATAGTACAAATCAGCAAA  150

seq1  CTAAAACTGAGAAAAAAAATCCTCACTAATCCCACATCCAATAGAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTGAGAAAAAAAATCCTCACTAATCCCACATCCAATAGAGGGCT  200

seq1  AATATCCAAAATATATGAAGAACTCAAGAATCTAACCACCAAAGAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAAAATATATGAAGAACTCAAGAATCTAACCACCAAAGAAAGAA  250

seq1  ACAACCCAATAAAAAAAGATGGGGTAAAGCCGGGCATGGTGGTGCATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCAATAAAAAAAGATGGGGTAAAGCCGGGCATGGTGGTGCATGCC  300

seq1  TTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGGATTTCTGAGTTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGGATTTCTGAGTTTGAG  350

seq1  GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAACCAGGGCTATACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAACCAGGGCTATACAGAG  400

seq1  AAACCCTGTCTCAAAAAAACAAACAAAACAAAACAAAAGAAATTCTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCAAAAAAACAAACAAAACAAAACAAAAGAAATTCTTTCA  450

seq1  GCTCATCCATCTAGATAAAGCCCATTGTTACCTGCAGTGGGGGCAGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCCATCTAGATAAAGCCCATTGTTACCTGCAGTGGGGGCAGGAAC  500

seq1  TCAAGGGAGAGTTCATGGAGGAACTTTGTATACTGGATGAGCTCTTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAGAGTTCATGGAGGAACTTTGTATACTGGATGAGCTCTTCCAC  550

seq1  AGCAATCCTTTTTTATAAATTAGATATTTTCTTTATTTACATTTCAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCCTTTTTTATAAATTAGATATTTTCTTTATTTACATTTCAAATG  600

seq1  TTATCCCCCACCCTCCCTGCCCCTGTTTGCCAACCCACCCACTCCTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCCCACCCTCCCTGCCCCTGTTTGCCAACCCACCCACTCCTGGCT  650

seq1  CCCCTGTCCTGGCATTCCCCTACATTGGGACATTGAGCCTTCACAGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTCCTGGCATTCCCCTACATTGGGACATTGAGCCTTCACAGGACA  700

seq1  AAGGGCCTCTCCTCCTATTGATTACTAACAAGGCCATCCTCAACTGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTCTCCTCCTATTGATTACTAACAAGGCCATCCTCAACTGCATA  750

seq1  TGCTTCTGGAGCCATGGATCCCTACATGTGTACTCTTTGCATGCTGGCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGGAGCCATGGATCCCTACATGTGTACTCTTTGCATGCTGGCGC  800

seq1  TAAGGCTGTTCCACACAGCCTGCTGCACACAGGTCCTGCCAGGAGAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTGTTCCACACAGCCTGCTGCACACAGGTCCTGCCAGGAGAGAGC  850

seq1  TGACCTCCAAGAAAGGCTAACACAGGC-TTTCAGATCCATAGTAGGGACA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGACCTCCAAGAAAGGCTAACACAGGCTTTTCAGATCCATAGTAGGGACA  900

seq1  ATTTCCAGCCAGATACAGCAAGACCAACTAATACCAGAGATAAACAGATA  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTTCCAGCCAGATACAGCAAGACCAACTAATACCAGAGATTAACAGATA  950

seq1  GT-GAAAAGAAACTACAAGAAT-CTCAAGATCAGAAACCAAGGTGAGTT-  996
      || |||||||||||||| |||| |||||||||||||||||||||||||| 
seq2  GTGGAAAAGAAACTACAGGAATCCTCAAGATCAGAAACCAAGGTGAGTTG  1000

seq1  GGCATCATC-AGAA-CCCAGTT-CTCTCACCACAGCAAA-TCCTGGATGC  1042
      ||||||||| |||| ||||||| |||||||||||||||| ||||||||||
seq2  GGCATCATCAAGAACCCCAGTTCCTCTCACCACAGCAAATTCCTGGATGC  1050

seq1  C  1043
      |
seq2  C  1051


seq1: chr16_61274390_61274906
seq2: B6Ng01-242I18.g_482_1018 (reverse)

seq1  TAATAGGAGTAGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAAT  50
      ||||||||||||||  |||||||| |||||||||| |||| |||||||||
seq2  TAATAGGAGTAGATTGGAATGAAGGTTTTCAACTC-AAGGGCCAGCAAAT  49

seq1  ATGTTCAACAAAATTATAGAAGAAAACTTCCCAAACCTAAAGAAAGAGAT  100
       | ||||   |||| ||| ||| ||||||||| |||||||||||||||||
seq2  -TCTTCA--CAAATAATATAAG-AAACTTCCCCAACCTAAAGAAAGAGAT  95

seq1  GCCCATGAACATACAAGAA-GCCTACAGAACTCCAAATAGACTTGACCAG  149
      | ||||| ||||||||||| || |||||||||||||||||||| ||||||
seq2  GGCCATG-ACATACAAGAAGGCTTACAGAACTCCAAATAGACTGGACCAG  144

seq1  AAAAGAATTTCCTCCCTACACATAATAATCAAAACAACAAATGCACTAAA  199
      ||||||| |||||||| |||||||||||||| ||||||||||||||||||
seq2  AAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAA  194

seq1  TAAGGATAGAATACT-AAAAGCAGTAAGGG-AAAAAGGTCAAGTAACATA  247
      ||| ||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TAAAGATAGAATACTAAAAAGCAGTAAGGGAAAAAAGGTCAAGTAACATA  244

seq1  TAAA-GGCAAGCCAAGCAGAATTACACCAGATTTTTCACCAGAGACTATG  296
      |||| |||| ||| | ||||| |||||||||||| ||||||||| |||||
seq2  TAAAGGGCAGGCCTATCAGAAGTACACCAGATTTATCACCAGAGTCTATG  294

seq1  AAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAA  346
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AAAGCCAGAAGATCCTGGACAGATGTTATACAGACACTAAGAGAACACAA  344

seq1  ATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATG  396
      ||  ||||||||||||||||||||||||||||| ||||||||||||    
seq2  ATGTCAGCCCAGGCTACTATACCCAGCCAAACTTTCAATTACCATA----  390

seq1  GAGAAACCAAAGTATTCCACAACAAAACCAAATTCACACATTATCTTTCC  446
      |||||||||||||||||||  |||||| |||||||||||||||| |||||
seq2  GAGAAACCAAAGTATTCCATGACAAAAACAAATTCACACATTATTTTTCC  440

seq1  ATGAATCCAGCCCTTC-AAGGATAATAACAGAAAAAAAAA----------  485
      | |||||||||| ||| |||||||||||||||||||||||          
seq2  ACGAATCCAGCCATTCAAAGGATAATAACAGAAAAAAAAAACAAAAACAA  490

seq1  ---------------AAAAAAAAAAAACAATACAAGGACAGAAAACA  517
                     ||||||||||||||||||||| ||||||| ||
seq2  AACAACAACAACAACAAAAAAAAAAAACAATACAAGCACAGAAACCA  537


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