BAC Information

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BAC

Clone NameB6Ng01-242K07
Chromosome4 (Build37)
Map Location 145,543,159 - 145,544,269
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242K07.bB6Ng01-242K07.g
ACCGA052233GA052234
length1,104969
definitionB6Ng01-242K07.b B6Ng01-242K07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcttgaaatttcagatcaaggtctgaataattcaaagatgaaa
taaatacaacaccattacagaaaatgctaaaccacattatatacataaaa
aaaaaattaaagcaaaatgataccaggaatcttgacaatgtgcactcatg
aaagtaagtaatgatatatttagactgtaactgtaacctagttcctgccc
accacccttgattctcaaagttaattcacaacacctgacatggaaatccc
tgccacctgacctaaatgacacacagcaaaagaaaattaagacgctggag
ctaaagcaatttgacaatgttaataaaattaccataccacaaatcactaa
ctcaataccaattctcatgacaaataaattatgaaacaaacacaagaggc
aaaagtcaaaatataatctgaacaccattcaatgtggacaaatgacataa
agagggaacaagcacagaaattcaaagaaggcagaaacaaacttaatgaa
attccagagaactcctacaagtgggtaagagaataattatacatatgcag
ggccttagggcttcagtcctcttccccgacccaatataagattattattc
cccacaaccttgtaacctttcaaggagaggcccctaggcctaacattatt
actgaggctatggagcagtcacaaagactatcatgactgtcttctgaaac
acccaagagcagttggatacagatgtttgcagccaacaaatggacagaag
ctcctgacccctgtggttgaggtaggggaaagctggaagaagctgaggaa
gaggggcaccctgtaggaggaccagcagtctcaattaacctgaaccccca
agatctctcagacactcgatcatcaaccgggaagcatccacctactgata
agaggcccctagcacatatgcagtggaagaatgctgggtctgggttcaat
tagggagcatgcatctaacccctggagagattggaggctccaggatgtta
gagtctggtcagtgggaggaggagggacatccttatgagacagaaaaggt
tgcagaagtgtgggaaggtgacactcagagaattgaccaggaagggcaat
aaaa
gaattctctgtttaggtattgtactggctagttttgtgtcaatttgacac
aactggagttatcacagagaaaggagcttcagttgaggaaatgcctccat
gagatccaactgtaaggcattttctcaattagtgatcaagggggaaaggc
ccttgtgggtgggaccatctcagggctggtagtcttggttctataagaaa
gcaggctgagcaagccaggggaggcaagccagtacagaacatccctccat
ggcctctgcatcagctcctgctccctgacctgcttgagttccagtcctga
cttcctttggtgatgaacagcagtatggaagtgtaagccaaataaaccct
ttcctccccaacttgcttcttggtcatgatgtttgtgcaggaatagaaac
cctgactaagacaaattggtaccagcagagtggggtattcctgtgacaac
ctgaccatgttttggggaggactgtggaaggactttggaactttgggctt
gaagatccatccgttgttaagagctctgtcagatgttgtgtaggagcttg
gaagataatgttgagaacactgcagaagatggaggtctggtttgtgaaat
ttcagagggaaaaattaaagactcttttcagggccattgctgttttgaat
gtgaagattctgtagttctggttagctggggctgaagaatcagttgtgat
taacaagataccagaactactaaagcaaaaactttgcatactgggactat
tgatgctggttagctggagctaagaaattagtggtgattaagaagagacc
agcatcattgaggtgacatcttctgggaagtgttttctgaaagcacaaag
aggctgtgttccagagatggccaaggttgtactcctgctgcagcgggact
tagtaatatgtaaagggtcacccaggttgttactggttttgaaggcatta
aaggggtcaaggcaaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145543159_145544269
seq2: B6Ng01-242K07.b_50_1153

seq1  GAATTCTTCTTGAAATTTCAGATCAAGGTCTGAATAATTCAAAGATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTGAAATTTCAGATCAAGGTCTGAATAATTCAAAGATGAAA  50

seq1  TAAATACAACACCATTACAGAAAATGCTAAACCACATTATATACTTAAAA  100
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAATACAACACCATTACAGAAAATGCTAAACCACATTATATACATAAAA  100

seq1  AAAAAATTAAAGCAAAATGATACCAGGAATCTTGACAATGTGCACTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAAGCAAAATGATACCAGGAATCTTGACAATGTGCACTCATG  150

seq1  AAAGTAAGTAATGATATATTTAGACTGTAACTGTAACCTAGTTCCTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGTAATGATATATTTAGACTGTAACTGTAACCTAGTTCCTGCCC  200

seq1  ACCACCCTTGATTCTCAAAGTTAATTCACAACACCTGATATGGAAATCCC  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCACCCTTGATTCTCAAAGTTAATTCACAACACCTGACATGGAAATCCC  250

seq1  TGCCACCTGACCTAAATGACACACAGCAAAAGAAAATTAAGACGCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTGACCTAAATGACACACAGCAAAAGAAAATTAAGACGCTGGAG  300

seq1  CTAAAGCAATTTGACAATGTTAATAAAATTACCATACCACAAATCACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAATTTGACAATGTTAATAAAATTACCATACCACAAATCACTAA  350

seq1  CTCAATACCAATTCTCATGACAAATAAATTATGAAACAAACACAAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATACCAATTCTCATGACAAATAAATTATGAAACAAACACAAGAGGC  400

seq1  AAAAGTCAAAATATAATCTGAACACCATTCAATGTGGACAAATGACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAAAATATAATCTGAACACCATTCAATGTGGACAAATGACATAA  450

seq1  AGAGGGAACAAGCACAGAAATTCAAAGAAGGCAGAAACAAACTTAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAACAAGCACAGAAATTCAAAGAAGGCAGAAACAAACTTAATGAA  500

seq1  ATTCCAGAGAACTCCTACAAGTGGGTAAGAGAATAATTATACATATGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAGAACTCCTACAAGTGGGTAAGAGAATAATTATACATATGCAG  550

seq1  GGCCTTAGGGCTTCAGTCCTCTTCCCCGACCCAATATAAGATTATTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAGGGCTTCAGTCCTCTTCCCCGACCCAATATAAGATTATTATTC  600

seq1  CCCACAACCTTGTAACCTTTCAAGGAGAGGCCCCTAGGCCTAACATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAACCTTGTAACCTTTCAAGGAGAGGCCCCTAGGCCTAACATTATT  650

seq1  ACTGAGGCTATGGAGCAGTCACAAAGACTATCATGACTGTCTTCTGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTATGGAGCAGTCACAAAGACTATCATGACTGTCTTCTGAAAC  700

seq1  ACCCAAGAGCAGTTGGATACAGATGTTTGCAGCCAACAAATGGACAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGAGCAGTTGGATACAGATGTTTGCAGCCAACAAATGGACAGAAG  750

seq1  CTCCTGACCCCTGTGGTTGAGGTAGGGGAAAGCTGGAAGAAGCTGAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACCCCTGTGGTTGAGGTAGGGGAAAGCTGGAAGAAGCTGAGGAA  800

seq1  GAGGGGCACCCTGTAGGAGGACCAGCAGTCTCAATTAACCTGAACCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCACCCTGTAGGAGGACCAGCAGTCTCAATTAACCTGAACCCCCA  850

seq1  AGATCTCTCAGACACTCGATCATCAACCGGGAAGCATGCACCTACTGATA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGATCTCTCAGACACTCGATCATCAACCGGGAAGCATCCACCTACTGATA  900

seq1  AGAGGCCCCTAGCACATATGCAGTGGAAGAATGCTGGGTCTGGGTTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCCTAGCACATATGCAGTGGAAGAATGCTGGGTCTGGGTTCAAT  950

seq1  TAGGGAGCATGCATCTAACCCCTGGAGAGATTGGAGGCTCCAGGATGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGGGAGCATGCATCTAACCCCTGGAGAGATTGGAGGCTCCAGGATG-TT  999

seq1  AGAGGTCTGGTCAGGTGGGGAGGAGGAGGGGACATCCTTATGGAGACAGA  1050
      ||| ||||||||||   |||||||||| ||||||||||||| ||||||||
seq2  AGA-GTCTGGTCAG--TGGGAGGAGGA-GGGACATCCTTAT-GAGACAGA  1044

seq1  GAGGTGGGCAGGAAGTGTGGG-AGGTGGAACACTCAGAGGATTGACCAGG  1099
       | |   ||| |||||||||| |||||  |||||||||| ||||||||||
seq2  AAAGGTTGCA-GAAGTGTGGGAAGGTG--ACACTCAGAGAATTGACCAGG  1091

seq1  -AGGGCAATAAAA  1111
       ||||||||||||
seq2  AAGGGCAATAAAA  1104