BAC Information

Click to search

BAC

Clone NameB6Ng01-242P16
Chromosome4 (Build37)
Map Location 93,703,133 - 93,829,721
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242P16.bB6Ng01-242P16.g
ACCGA052485GA052486
length644939
definitionB6Ng01-242P16.b B6Ng01-242P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,829,078 - 93,829,721)(93,703,133 - 93,703,741)
sequence
gaattcttcttagttttaaactacattgtagtattgaactacattgtaaa
actttttgttgttattcttatgattttttgggaacaagtttaagtttagt
attttccctgtcactaatataaggttcactttttacgtagacatttttac
ctgctcttctgcagaggggtttatcatatttacagaaaaggtcctcagac
ttgagggtcctctgggaactttttttctgcatggtgttttatgagtgtac
ttggatcataaaatggttttgactgagcaattcgctcactccagcctcca
aagcattctcatcttttccttctctgagcccttcttccactacattgcta
agttaacccctagatggtgtcctttggtaatttttgtagtctggatatga
ttaaaacttgaaggagaactttgatgcatcctccagtttctaaggactgt
gctgaaaaatctgacaatctgtggttgagaatagcatgtccttcatgttc
tagcatagtgatggtgagttcagttctgaaactgtgggaagttcctcaga
gcatggagagtttaatgggaccatagttggttgagaaagactcagccaag
tacagatatgaagcctacttatttattgtgtatatgattgtgtg

gaattctttatttgtatgaaacatcacactttatcttccaagagtacatt
tactgtgtgacaattaagaccttttcaaggtctgtgatgttatgatatct
taagactcctgcctctgtggcatggtggggcatcttttgggtatattccc
aagggtggtatagctaggtcttcaggtaaatctacttccaattttctgag
gaacctccagattgatttccagagtggttgtaccagtttgcaatgccaac
agcaatggaggagtgttcctctttctccatatcctctccagcatgtgttg
tcacctgaggttttgatcttagccattctgactggtgtaaggtggaatct
cagggtcattttgatttgcatttttctgatcactaaggacttggaacatt
tctttaggtgtttctcaaccattggagattcctcagttgtgaattcttcg
tttatttctgtaccccattttttgattgggttgtttgtttgtttgttttt
gttttgttttttggtgattaacttcttgagttctttatatattttggata
ttagccctctatcagatgtggggtcatggaagatatttttttcccaatca
gtaggttgccaatttgtcttatcgactgtgtcctttatcttacagaagct
ttccttatttgtgatagccagaagctggaaacaacctagatgtacaacga
tgtatttacacaaaagaatactacgcagctattaagagtaagtatatcct
gacttttgcaggctaatggatagaactagaaaatatcatcctgagtgagg
taactcagacccaaaaagacatgcatggtatgcactcactaataagtagg
atattagccaataaaataaaataaaattaaattaaatttaatttaaatta
aattaaattaaaggaaaagggaaaaaaacatacagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93829078_93829721
seq2: B6Ng01-242P16.b_46_689 (reverse)

seq1  CACACAATCATATACACAATAAATAAGTAGGCTTCATATCTGTACTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATCATATACACAATAAATAAGTAGGCTTCATATCTGTACTTGGC  50

seq1  TGAGTCTTTCTCAACCAACTATGGTCCCATTAAACTCTCCATGCTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTTCTCAACCAACTATGGTCCCATTAAACTCTCCATGCTCTGAG  100

seq1  GAACTTCCCACAGTTTCAGAACTGAACTCACCATCACTATGCTAGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCCCACAGTTTCAGAACTGAACTCACCATCACTATGCTAGAACAT  150

seq1  GAAGGACATGCTATTCTCAACCACAGATTGTCAGATTTTTCAGCACAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACATGCTATTCTCAACCACAGATTGTCAGATTTTTCAGCACAGTC  200

seq1  CTTAGAAACTGGAGGATGCATCAAAGTTCTCCTTCAAGTTTTAATCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAACTGGAGGATGCATCAAAGTTCTCCTTCAAGTTTTAATCATAT  250

seq1  CCAGACTACAAAAATTACCAAAGGACACCATCTAGGGGTTAACTTAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTACAAAAATTACCAAAGGACACCATCTAGGGGTTAACTTAGCAA  300

seq1  TGTAGTGGAAGAAGGGCTCAGAGAAGGAAAAGATGAGAATGCTTTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGAAGAAGGGCTCAGAGAAGGAAAAGATGAGAATGCTTTGGAGG  350

seq1  CTGGAGTGAGCGAATTGCTCAGTCAAAACCATTTTATGATCCAAGTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGAGCGAATTGCTCAGTCAAAACCATTTTATGATCCAAGTACAC  400

seq1  TCATAAAACACCATGCAGAAAAAAAGTTCCCAGAGGACCCTCAAGTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAACACCATGCAGAAAAAAAGTTCCCAGAGGACCCTCAAGTCTGA  450

seq1  GGACCTTTTCTGTAAATATGATAAACCCCTCTGCAGAAGAGCAGGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTTTCTGTAAATATGATAAACCCCTCTGCAGAAGAGCAGGTAAAA  500

seq1  ATGTCTACGTAAAAAGTGAACCTTATATTAGTGACAGGGAAAATACTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACGTAAAAAGTGAACCTTATATTAGTGACAGGGAAAATACTAAA  550

seq1  CTTAAACTTGTTCCCAAAAAATCATAAGAATAACAACAAAAAGTTTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTTGTTCCCAAAAAATCATAAGAATAACAACAAAAAGTTTTACA  600

seq1  ATGTAGTTCAATACTACAATGTAGTTTAAAACTAAGAAGAATTC  644
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTCAATACTACAATGTAGTTTAAAACTAAGAAGAATTC  644


seq1: chr4_93703133_93703741
seq2: B6Ng01-242P16.g_70_678

seq1  GAATTCTTTATTTGTATGAAACATCACACTTTATCTTCCAAGAGTACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTGTATGAAACATCACACTTTATCTTCCAAGAGTACATT  50

seq1  TACTGTGTGACAATTAAGACCTTTTCAAGGTCTGTGATGTTATGATATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTGACAATTAAGACCTTTTCAAGGTCTGTGATGTTATGATATCT  100

seq1  TAAGACTCCTGCCTCTGTGGCATGGTGGGGCATCTTTTGGGTATATTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCCTGCCTCTGTGGCATGGTGGGGCATCTTTTGGGTATATTCCC  150

seq1  AAGGGTGGTATAGCTAGGTCTTCAGGTAAATCTACTTCCAATTTTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGTATAGCTAGGTCTTCAGGTAAATCTACTTCCAATTTTCTGAG  200

seq1  GAACCTCCAGATTGATTTCCAGAGTGGTTGTACCAGTTTGCAATGCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCAGATTGATTTCCAGAGTGGTTGTACCAGTTTGCAATGCCAAC  250

seq1  AGCAATGGAGGAGTGTTCCTCTTTCTCCATATCCTCTCCAGCATGTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGAGGAGTGTTCCTCTTTCTCCATATCCTCTCCAGCATGTGTTG  300

seq1  TCACCTGAGGTTTTGATCTTAGCCATTCTGACTGGTGTAAGGTGGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAGGTTTTGATCTTAGCCATTCTGACTGGTGTAAGGTGGAATCT  350

seq1  CAGGGTCATTTTGATTTGCATTTTTCTGATCACTAAGGACTTGGAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCATTTTGATTTGCATTTTTCTGATCACTAAGGACTTGGAACATT  400

seq1  TCTTTAGGTGTTTCTCAACCATTGGAGATTCCTCAGTTGTGAATTCTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGTGTTTCTCAACCATTGGAGATTCCTCAGTTGTGAATTCTTCG  450

seq1  TTTATTTCTGTACCCCATTTTTTGATTGGGTTGTTTGTTTGTTTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTGTACCCCATTTTTTGATTGGGTTGTTTGTTTGTTTGTTTTT  500

seq1  GTTTTGTTTTTTGGTGATTAACTTCTTGAGTTCTTTATATATTTTGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTGGTGATTAACTTCTTGAGTTCTTTATATATTTTGGATA  550

seq1  TTAGCCCTCTATCAGATGTGGGGTCATGGAAGATATTTTTTTCCCAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCTCTATCAGATGTGGGGTCATGGAAGATATTTTTTTCCCAATCA  600

seq1  GTAGGTTGC  609
      |||||||||
seq2  GTAGGTTGC  609


| Home | SequenceCutter | Blast | Download |