MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-243A07
Chromosome	4 (Build37)
Map Location	99,316,765 - 99,476,971
singlet/doublet	doublet
Overlap gene	LOC100042589, Foxd3, Alg6, Itgb3bp
Upstream gene	Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890
Downstream gene	BC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573, Cachd1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Inadl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12695 MGI:1277960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	L1td1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381591 MGI:3578435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242553 MGI:3043381
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039541 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039541
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Usp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230484 MGI:2385198
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dock7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67299 MGI:1914549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Angptl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30924 MGI:1353627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665193 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665193
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs

name	Atg4c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242557 MGI:2651854
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665212 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665212
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 19 Proteins pseudo : _no_value

name	LOC638890 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:638890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC100042589 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042589
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Foxd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15221 MGI:1347473
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Alg6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320438 MGI:2444031
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itgb3bp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67733 MGI:1914983
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC020077 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230500 MGI:2385199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pgm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72157 MGI:97565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ror1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26563 MGI:1347520
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube2u (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381534 MGI:3588216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC277707 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:277707
definition	note : C3orf6 pseudogene pseudo : _no_value

name	LOC621573 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621573
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Cachd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320508 MGI:2444177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Inadl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55769577 GeneID:12695 MGI:1277960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : InaD-like (Drosophila) transcript_id : NM_172696.2

name	Inadl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55769579 GeneID:12695 MGI:1277960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : InaD-like (Drosophila) transcript_id : NM_007704.2

name	Inadl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55769575 GeneID:12695 MGI:1277960
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : InaD-like (Drosophila) transcript_id : NM_001005787.1

name	L1td1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487094 GeneID:381591 MGI:3578435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LINE-1 type transposase domain containing 1 transcript_id : NM_001081202.1

name	Ankrd38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254256 GeneID:242553 MGI:3043381
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 38 transcript_id : NM_172872.2

name	Usp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801746 GeneID:230484 MGI:2385198
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptdiase 1 transcript_id : NM_146144.3

name	Dock7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110835727 GeneID:67299 MGI:1914549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dedicator of cytokinesis 7 transcript_id : NM_026082.4

name	Angptl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388354 GeneID:30924 MGI:1353627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : angiopoietin-like 3 transcript_id : NM_013913.3

name	LOC665193 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372140 GeneID:665193
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs product : hypothetical LOC665193 transcript_id : XM_975196.1

name	Atg4c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254278 GeneID:242557 MGI:2651854
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : autophagy-related 4C (yeast) transcript_id : NM_175029.2

name	LOC638890 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252787 GeneID:638890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to retinitis pigmentosa GTPase regulator interacting protein 1 transcript_id : XM_923553.3

name	LOC100042589 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252798 GeneID:100042589
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042589 transcript_id : XM_001479187.1

name	Foxd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112807214 GeneID:15221 MGI:1347473
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box D3 transcript_id : NM_010425.3

name	Alg6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486912 GeneID:320438 MGI:2444031
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase) transcript_id : NM_001081264.1

name	Itgb3bp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343818 GeneID:67733 MGI:1914983
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrin beta 3 binding protein (beta3-endonexin) transcript_id : NM_026348.3

name	BC020077 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704081 GeneID:230500 MGI:2385199
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC020077 transcript_id : NM_145549.1

name	Pgm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980725 GeneID:72157 MGI:97565
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphoglucomutase 2 transcript_id : NM_028132.2

name	Ror1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378635 GeneID:26563 MGI:1347520
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : receptor tyrosine kinase-like orphan receptor 1 transcript_id : NM_013845.3

name	Ube2u (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357299 GeneID:381534 MGI:3588216
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2U (putative) transcript_id : NM_001033773.2

name	Cachd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930562 GeneID:320508 MGI:2444177
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cache domain containing 1 transcript_id : NM_198037.1

name	Inadl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55769578 CCDS:CCDS18375.1 GeneID:12695 MGI:1277960
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; InaD-like protein; PALS1-associated tight junction protein; inactivation no after-potential D-like protein; channel-interacting PDZ domain protein; novel ankyrin-repeat protein product : InaD-like protein isoform 1 protein_id : NP_766284.2

name	Inadl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671754 CCDS:CCDS18376.1 GeneID:12695 MGI:1277960
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; InaD-like protein; PALS1-associated tight junction protein; inactivation no after-potential D-like protein; channel-interacting PDZ domain protein; novel ankyrin-repeat protein product : InaD-like protein isoform 3 protein_id : NP_031730.1

name	Inadl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55769576 CCDS:CCDS18377.1 GeneID:12695 MGI:1277960
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; InaD-like protein; PALS1-associated tight junction protein; inactivation no after-potential D-like protein; channel-interacting PDZ domain protein; novel ankyrin-repeat protein product : InaD-like protein isoform 4 protein_id : NP_001005787.1

name	L1td1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487095 GeneID:381591 MGI:3578435
definition	codon_start : 1 product : LINE-1 type transposase domain containing 1 protein_id : NP_001074671.1

name	Ankrd38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254257 CCDS:CCDS18379.1 GeneID:242553 MGI:3043381
definition	codon_start : 1 product : ankyrin repeat domain 38 protein_id : NP_766460.2

name	Usp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981898 CCDS:CCDS18381.1 GeneID:230484 MGI:2385198
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 1 protein_id : NP_666256.2

name	Dock7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78191789 GeneID:67299 MGI:1914549
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0051020 - GTPase binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA] codon_start : 1 note : dedicator of cytokinesis protein 7 product : dedicator of cytokinesis 7 protein_id : NP_080358.3

name	Angptl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33469117 GeneID:30924 MGI:1353627
definition	GO_component : GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0004857 - enzyme inhibitor activity [Evidence IDA]; GO:0005178 - integrin binding [Evidence ISS] GO_process : GO:0007160 - cell-matrix adhesion [Evidence ISS]; GO:0007229 - integrin-mediated signaling pathway [Evidence ISS]; GO:0016042 - lipid catabolism [Evidence ISS]; GO:0045766 - positive regulation of angiogenesis [Evidence ISS]; GO:0030335 - positive regulation of cell migration [Evidence ISS]; GO:0045834 - positive regulation of lipid metabolism [Evidence NAS]; GO:0006641 - triacylglycerol metabolism [Evidence NAS] codon_start : 1 note : hypolipidemia product : angiopoietin-like 3 protein_id : NP_038941.1

name	LOC665193 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94372141 GeneID:665193
definition	codon_start : 1 product : hypothetical protein protein_id : XP_980290.1

name	Atg4c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254279 CCDS:CCDS18382.1 GeneID:242557 MGI:2651854
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005829 - cytosol [Evidence ISS]; GO:0005875 - microtubule associated complex [Evidence ISS] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence ISS]; GO:0008234 - cysteine-type peptidase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008017 - microtubule binding [Evidence ISS]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0000045 - autophagic vacuole formation [Evidence ISS]; GO:0006914 - autophagy [Evidence ISS]; GO:0006612 - protein targeting to membrane [Evidence ISS]; GO:0006623 - protein targeting to vacuole [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006508 - proteolysis [Evidence ISS]; GO:0006810 - transport [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : cysteine protease involved in autophagy; autophagin 3; autophagy-related 4C-like; AUT-like 1, cysteine endopeptidase; APG4 (ATG4) autophagy-related homolog C product : APG4 autophagy 4 homolog C protein_id : NP_778194.2

name	LOC638890 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252788 GeneID:638890
definition	codon_start : 1 product : hypothetical protein protein_id : XP_928646.3

name	LOC100042589 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252799 GeneID:100042589
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479237.1

name	Foxd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112807215 CCDS:CCDS18383.1 GeneID:15221 MGI:1347473
definition	GO_component : GO:0005634 - nucleus [Evidence IC] [Evidence IEA] [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence TAS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] [Evidence TAS] [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IDA]; GO:0001892 - embryonic placenta development [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence TAS]; GO:0001829 - trophectodermal cell differentiation [Evidence IMP] codon_start : 1 note : HNF-3/forkhead homolog 2 product : forkhead box D3 protein_id : NP_034555.3

name	Alg6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486913 GeneID:320438 MGI:2444031
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046527 - glucosyltransferase activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006487 - protein amino acid N-linked glycosylation [Evidence ISS] codon_start : 1 product : asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase) protein_id : NP_001074733.1

name	Itgb3bp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385850 CCDS:CCDS18387.1 GeneID:67733 MGI:1914983
definition	codon_start : 1 note : beta3-endonexin product : integrin beta 3 binding protein protein_id : NP_080624.1

name	BC020077 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704082 GeneID:230500 MGI:2385199
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC230500 protein_id : NP_663524.1

name	Pgm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980726 CCDS:CCDS18388.1 GeneID:72157 MGI:97565
definition	GO_function : GO:0004614 - phosphoglucomutase activity [Evidence IDA] codon_start : 1 exception : mismatches in translation note : phosphoglucomutase 1 product : phosphoglucomutase 2 protein_id : NP_082408.2

name	Ror1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560493 CCDS:CCDS18389.1 GeneID:26563 MGI:1347520
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence TAS] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : neurotrophic tyrosine kinase, receptor related 1 product : receptor tyrosine kinase-like orphan receptor 1 protein_id : NP_038873.2

name	Ube2u (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702123 CCDS:CCDS18390.1 GeneID:381534 MGI:3588216
definition	codon_start : 1 product : ubiquitin-conjugating enzyme E2U (putative) protein_id : NP_001028945.1

name	Cachd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930563 CCDS:CCDS18391.1 GeneID:320508 MGI:2444177
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : von Willebrand factor type A and cache domain containing 1 protein_id : NP_932154.1

name	LOC100039541 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039541
definition	number : 1 pseudo : _no_value

name	LOC100039541 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039541
definition	number : 2 pseudo : _no_value

name	LOC621573 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621573
definition	number : 1 pseudo : _no_value

name	LOC621573 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621573
definition	number : 2 pseudo : _no_value

name	LOC665212 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252786 GeneID:665212
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 19 Proteins product : similar to glyceraldehyde-3-phosphate dehydrogenase pseudo : _no_value transcript_id : XR_031097.1

clone name	MSMg01-390M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266C22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-102A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538P14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-531E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071L19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-106B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524L03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-514C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098M02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-243A07.b	B6Ng01-243A07.g
ACC	GA052515	GA052516
length	591	456
definition	B6Ng01-243A07.b	B6Ng01-243A07.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(99,316,765 - 99,317,361)	(99,476,510 - 99,476,971)
sequence	ctgcaagaacacaaaaccatggcgattttgaaggacagagttctaatagg tgttccaggtcattcaggtacttcggggccatgcataagtaggaagtgga ttccatgcttcccctcagagaatccttggggcggggcgggggactggata ctcccagtcctcccctccccctcacaaggcggaatccccacggggctttg gcaaaccggtgcaacgaaagctgcagaatcgccctctttcccgctgggtc cagagagatggcaaagagtcttaggccgggtttttttttttgcaaccgca ccccctccccaccccgccctctatcgctgtccctggggatctgcccccaa ggctaggagggcaggacagagtagcgatgtggagaattcgatgtccgagc gacctcctcggaggagtggatcgagttaaatataactgcgcgaatggaat ggcgctaaaaataaggtagcagctggcagatcctctgccctgtcccggga aaggagggggcaagaatggtttcgcccagggagtagctaggaggtacggc ttccgcaacctgggtcgggggaccactgaggctccactaga	cttttccatcacttctcctcacaaagctagaagagagggtgaagccattt atcctagcctgagacacaagacattgcctctgtcctctgccctacctacc caccccactttattcatcacggtagctaaggaaagagactcaagtccaga cagagtgtatggccacaatgggaaactgctgaacagcagaaccattgtgt gagttctcagtacctgaaggtcttgttccatattccatggcattgccctt tggtctgatggcttaagtatcacttgactctttattcgcttgaaaatttt tgtttatgttatctttcatagttgtctaaatttattaaatatttcaaaat atattcactcagtgtaaaaaatatttaataaacagtatccatatgaaaaa agatttttaaattatatatatgtgtgtatgtgtgtgtgtgtgtgtgtgtg tgtgtg
quality values	Open. Hide. 62 38 49 54 56 47 62 59 56 56 41 59 59 62 62 62 62 59 43 62 62 62 62 62 59 59 34 34 30 23 34 28 25 34 36 36 43 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 59 59 62 62 62 59 59 62 54 56 31 42 49 54 56 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 62 54 54 62 62 62 59 59 59 62 62 62 62 49 54 62 62 62 54 43 62 62 62 62 62 62 62 62 62 62 54 59 62 62 54 54 59 59 59 59 62 62 62 54 42 54 62 62 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 59 62 59 62 50 59 62 59 62 62 62 59 59 59 59 59 59 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 59 59 62 59 62 62 54 62 62 62 62 62 59 50 54 54 62 62 59 59 62 62 62 62 59 59 59 59 59 59 59 59 59 59 62 62 62 62 62 59 49 59 43 54 46 54 49 56 59 56 56 59 59 50 62 50 56 56 56 56 56 50 62 46 50 46 56 56 62 62 62 62 62 62 62 62 62 62 49 54 59 51 56 59 59 50 59 59 59 62 62 59 59 59 59 59 56 56 50 56 50 46 45 36 43 51 59 56 54 59 59 59 56 56 59 62 59 51 56 59 56 56 59 59 62 62 59 56 46 50 56 51 59 59 59 59 51 46 51 62 49 51 51 43 56 59 43 56 46 43 51 43 62 59 59 51 24 50 23 34 40 19 56 34 50 35 48 34 43 39 50 34 50 59 59 59 56 35 49 51 59 46 49 51 51 54 17 30 23 27 28 27 34 34 43 43 43 43 59 54 27 56 46 23 29 28 34 46 59 50 27 46 49 51 49 43 49 49 43 30 46 23 34 28 25 34 20 19 30 11 32 18 23 34 28 34 46 32 50 39 24 30 39 46 39 50 26 34 30 21 22 34 30 59 43 51 41 43 36 21 39 43 43 43 18 30 18 39 32 26 26 24 32 26 56 56 56 56 42 44 42 35 35 39 22 37 27 24 28 29 31 51 38 35 50 31 27 27 20 30 20 14 24 23 26 42 31 24 33 26 24 14 21 31 22 30 19 9 17 24 9 14 20 10 17 27 29 19 38 32 10 56 47 39 30 25 37 30 42 56 42 38 22 27 23 7 18 33 35 35 13 24 18 14 30 34 31 17 35 33 22 12 9 27 27 22 22 10 27 24 30 22 21 9 13 16 13 9 17	Open. Hide. 62 62 62 62 31 24 22 8 23 23 13 17 28 28 43 43 43 62 62 62 59 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 56 56 54 38 28 48 54 54 54 54 59 59 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 54 59 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 59 62 54 54 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 49 49 58 49 49 58 58 49 58 58 58 58 58 58 58 58 58 58 54 58 52 46 9 5

Alignment Information

BAC End 1

BAC End 2

seq1: chr4_99316765_99317361
seq2: B6Ng01-243A07.b_46_642

seq1  GAATTCCTGCAAGAACACAAAACCATGGCGATTTTGAAGGACAGAGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAAGAACACAAAACCATGGCGATTTTGAAGGACAGAGTTCT  50

seq1  AATAGGTGTTCCAGGTCATTCAGGTACTTCGGGGCCATGCATAAGTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGTTCCAGGTCATTCAGGTACTTCGGGGCCATGCATAAGTAGGA  100

seq1  AGTGGATTCCATGCTTCCCCTCAGAGAATCCTTGGGGCGGGGCGGGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATTCCATGCTTCCCCTCAGAGAATCCTTGGGGCGGGGCGGGGGAC  150

seq1  TGGATACTCCCAGTCCTCCCCTCCCCCTCACAAGGCGGAATCCCCACGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTCCCAGTCCTCCCCTCCCCCTCACAAGGCGGAATCCCCACGGG  200

seq1  GCTTTGGCAAACCGGTGCAACGAAAGCTGCAGAATCGCCCTCTTTCCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCAAACCGGTGCAACGAAAGCTGCAGAATCGCCCTCTTTCCCGC  250

seq1  TGGGTCCAGAGAGATGGCAAAGAGTCTTAGGCCGGGTTTTTTTTTTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCAGAGAGATGGCAAAGAGTCTTAGGCCGGGTTTTTTTTTTTGCA  300

seq1  ACCGCACCCCCTCCCCACCCCGCCCTCTATCGCTGTCCCTGGGGATCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCACCCCCTCCCCACCCCGCCCTCTATCGCTGTCCCTGGGGATCTGC  350

seq1  CCCCAAGGCTAGGAGGGCAGGACAGAGTAGCGATGTGGAGAATTCGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGCTAGGAGGGCAGGACAGAGTAGCGATGTGGAGAATTCGATGT  400

seq1  CCGAGCGACCTCCTCGGAGGAGTGGATCGAGTTAAATATAACTGCGCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCGACCTCCTCGGAGGAGTGGATCGAGTTAAATATAACTGCGCGAA  450

seq1  TGGAATGGCGCTAAAAATAAGGTAGCAGCTGGCAGATCCTCTGCCCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGCGCTAAAAATAAGGTAGCAGCTGGCAGATCCTCTGCCCTGTC  500

seq1  CCGGGAAAGGAGGGGGCAAGAATGGTTTCGCCCAGGGAGTAGCTAGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAAAGGAGGGGGCAAGAATGGTTTCGCCCAGGGAGTAGCTAGGAGG  550

seq1  TACGGCTTCCGCAACCTGGGTCGGGGGACCACTGAGGCTCCACTAGA  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCTTCCGCAACCTGGGTCGGGGGACCACTGAGGCTCCACTAGA  597

seq1: chr4_99476510_99476971
seq2: B6Ng01-243A07.g_70_531 (reverse)

seq1  CACACACACACACACACACACACACACATACACACATATATATAATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACATACACACATATATATAATTTAA  50

seq1  AAATCTTTTTTCATATGGATACTGTTTATTAAATATTTTTTACACTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTTTCATATGGATACTGTTTATTAAATATTTTTTACACTGAGT  100

seq1  GAATATATTTTGAAATATTTAATAAATTTAGACAACTATGAAAGATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATTTTGAAATATTTAATAAATTTAGACAACTATGAAAGATAACA  150

seq1  TAAACAAAAATTTTCAAGCGAATAAAGAGTCAAGTGATACTTAAGCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAAATTTTCAAGCGAATAAAGAGTCAAGTGATACTTAAGCCATC  200

seq1  AGACCAAAGGGCAATGCCATGGAATATGGAACAAGACCTTCAGGTACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAAGGGCAATGCCATGGAATATGGAACAAGACCTTCAGGTACTGA  250

seq1  GAACTCACACAATGGTTCTGCTGTTCAGCAGTTTCCCATTGTGGCCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACACAATGGTTCTGCTGTTCAGCAGTTTCCCATTGTGGCCATAC  300

seq1  ACTCTGTCTGGACTTGAGTCTCTTTCCTTAGCTACCGTGATGAATAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTGGACTTGAGTCTCTTTCCTTAGCTACCGTGATGAATAAAGT  350

seq1  GGGGTGGGTAGGTAGGGCAGAGGACAGAGGCAATGTCTTGTGTCTCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGTAGGTAGGGCAGAGGACAGAGGCAATGTCTTGTGTCTCAGGC  400

seq1  TAGGATAAATGGCTTCACCCTCTCTTCTAGCTTTGTGAGGAGAAGTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAAATGGCTTCACCCTCTCTTCTAGCTTTGTGAGGAGAAGTGATG  450

seq1  GAAAAGGAATTC  462
      ||||||||||||
seq2  GAAAAGGAATTC  462

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BAC

BAC End Information

Alignment Information