BAC Information

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BAC

Clone NameB6Ng01-243B24
Chromosome4 (Build37)
Map Location 80,814,813 - 80,979,177
singlet/doubletdoublet
Overlap geneMpdz
Upstream geneTyrp1, D4Bwg0951e
Downstream geneLOC100040131, LOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243B24.bB6Ng01-243B24.g
ACCGA052595GA052596
length6341,112
definitionB6Ng01-243B24.b B6Ng01-243B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,978,547 - 80,979,177)(80,814,813 - 80,815,954)
sequence
gaattcctgatcaaggaataaaagattgattgcagttacatttttccagg
cttgttaataatcaccgctatagacgccaggaaagagcagatgcttttct
gggggaggtgtagatgcgagggaggtggagagggggaaatatccaggagc
acccacttttaactacatatgtatgcgtctcacattcagcataagacatt
gacatttgttaacaccattgtaaaaagacgctgcggcgtatgcttcccat
tctagattctctgcagcacctgctgacgatcgggcccccttttatgtgtg
agtattggtgactcaaaagctcattatggtggtgtgttacaacttgtctg
tgaaaaccatttcatgcttttgtaacatcccagatccagatcagattcag
tgtgtacagtttggctgttttcttcatttataagaatgtcatttccagca
gagctatgcagttgctacattttcgcattgcaataatggttgtaaactca
tttggaaatcctttttttgtcagccactaagcttccaggctccttttgtg
agactgatttctgtgtgcatgttcaggcgtgacccctggattagcagctg
tttatcacatgtcatcatcactaaagcgtatctc
gaattctgaagactgggtgaccagcagttgccaatccctgaccgttgcct
tcctgagttgtttcattgttttttatatcagcaaatgtttgggataagtg
atgaatccttttgcttttttggcaggtattcaagacaaacataagattca
gagtctttatgagcaaaaggaattggcttattagttatgagatctgcagg
cttgctgaatttatcccagaagatgggtctatggaactgatggataggat
attcaggtgtgcaggccctgcagcactaactgatgataatgaatgcgctg
cagtctggccctgaagtggcagaacagcaggtatcttatctttggggttt
tttttccccattcattttttaacatcattgttaacggagaaaaatctctc
taattctgtgcagccacagttagactcattaagtagctcttttttcttag
ttccaaacatgtttatccttttttaggtttggatttactaggtcgtgaat
gttggtttacagtcacagttttcaccaaagtagccactggctcccaatac
agttccagtttcacataaacaccaggactaaatggaggcttctttgcctc
tgctcagcagctcagcatgtgccctggctgatgggatgtgttttcaagtt
gcatcacatatcttattcaggtttactatggctgccatcaaccaccatga
ccaaagaaggaagaaaggacctatgtggctaatgcttccacatcacagtc
catcatcaaaacaaatcaaaacaggaacccaaacaggacaggaatctgga
gacaggaactgatgcagaggtcatggaggtgtgttgcttactggcttgtt
ccttgtagcttgttgattctaatttctttcttttttttttccaaaaacat
ttttattagatatttttcttcatttacattcaatgctatctgaaagtccc
tatgccttcccctgccctgctcccaatgcacccactcccgcattctgact
gcatcccctctactggggtatataatctcgcagtcaagggctctcctcca
tgatgcgactagcaatctattcttagacaaggccatcagctaaggtactc
actcatagctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80978547_80979177
seq2: B6Ng01-243B24.b_43_676 (reverse)

seq1  GAGATTCGCTTTAGTGATGCTGACATGTGAT-AACAGCTGCTAATCCAGG  49
      ||||| ||||||||||||| ||||||||||| ||||||||||||||||||
seq2  GAGATACGCTTTAGTGATGATGACATGTGATAAACAGCTGCTAATCCAGG  50

seq1  GGTCACGCCTGAACATGCACACAG-AATCAGTCTCAC-AAAGGAGCCTGG  97
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GGTCACGCCTGAACATGCACACAGAAATCAGTCTCACAAAAGGAGCCTGG  100

seq1  AAGCTTAGTGGCTGACAAAAAAAGGATTTCCAAATGAGTTTACAACCATT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAGTGGCTGACAAAAAAAGGATTTCCAAATGAGTTTACAACCATT  150

seq1  ATTGCAATGCGAAAATGTAGCAACTGCATAGCTCTGCTGGAAATGACATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATGCGAAAATGTAGCAACTGCATAGCTCTGCTGGAAATGACATT  200

seq1  CTTATAAATGAAGAAAACAGCCAAACTGTACACACTGAATCTGATCTGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAATGAAGAAAACAGCCAAACTGTACACACTGAATCTGATCTGGA  250

seq1  TCTGGGATGTTACAAAAGCATGAAATGGTTTTCACAGACAAGTTGTAACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATGTTACAAAAGCATGAAATGGTTTTCACAGACAAGTTGTAACA  300

seq1  CACCACCATAATGAGCTTTTGAGTCACCAATACTCACACATAAAAGGGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCATAATGAGCTTTTGAGTCACCAATACTCACACATAAAAGGGGG  350

seq1  CCCGATCGTCAGCAGGTGCTGCAGAGAATCTAGAATGGGAAGCATACGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATCGTCAGCAGGTGCTGCAGAGAATCTAGAATGGGAAGCATACGCC  400

seq1  GCAGCGTCTTTTTACAATGGTGTTAACAAATGTCAATGTCTTATGCTGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGTCTTTTTACAATGGTGTTAACAAATGTCAATGTCTTATGCTGAA  450

seq1  TGTGAGACGCATACATATGTAGTTAAAAGTGGGTGCTCCTGGATATTTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACGCATACATATGTAGTTAAAAGTGGGTGCTCCTGGATATTTCC  500

seq1  CCCTCTCCACCTCCCTCGCATCTACACCTCCCCCAGAAAAGCATCTGCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCACCTCCCTCGCATCTACACCTCCCCCAGAAAAGCATCTGCTC  550

seq1  TTTCCTGGCGTCTATAGCGGTGATTATTAACAAGCCTGGAAAAATGTAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGCGTCTATAGCGGTGATTATTAACAAGCCTGGAAAAATGTAAC  600

seq1  TGCAATCAATCTTTTATTCCTTGATCAGGAATTC  631
      ||||||||||||||||||||||||||||||||||
seq2  TGCAATCAATCTTTTATTCCTTGATCAGGAATTC  634

seq1: chr4_80814813_80815954
seq2: B6Ng01-243B24.g_67_1178

seq1  GAATTCTGAAGACTGGGTGACCAGCAGTTGCCAATCCCTGACCGTTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGACTGGGTGACCAGCAGTTGCCAATCCCTGACCGTTGCCT  50

seq1  TCCTGAGTTGTTTCATTGTTTTTTATATCAGCAAATGTTTGGGATAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTGTTTCATTGTTTTTTATATCAGCAAATGTTTGGGATAAGTG  100

seq1  ATGAATCCTTTTGCTTTTTTGGCAGGTATTCAAGACAAACATAAGATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCTTTTGCTTTTTTGGCAGGTATTCAAGACAAACATAAGATTCA  150

seq1  GAGTCTTTATGAGCAAAAGGAATTGGCTTATTAGTTATGAGATCTGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTATGAGCAAAAGGAATTGGCTTATTAGTTATGAGATCTGCAGG  200

seq1  CTTGCTGAATTTATCCCAGAAGATGGGTCTATGGAACTGATGGATAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGAATTTATCCCAGAAGATGGGTCTATGGAACTGATGGATAGGAT  250

seq1  ATTCAGGTGTGCAGGCCCTGCAGCACTAACTGATGATAATGAATGCGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTGTGCAGGCCCTGCAGCACTAACTGATGATAATGAATGCGCTG  300

seq1  CAGTCTGGCCCTGAAGTGGCAGAACAGCAGGTATCTTATCTTTGGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGCCCTGAAGTGGCAGAACAGCAGGTATCTTATCTTTGGGGTTT  350

seq1  TTTTTCCCCATTCATTTTTTAACATCATTGTTAACGGAGAAAAATCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCATTCATTTTTTAACATCATTGTTAACGGAGAAAAATCTCTC  400

seq1  TAATTCTGTGCAGCCACAGTTAGACTCATTAAGTAGCTCTTTTTTCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGTGCAGCCACAGTTAGACTCATTAAGTAGCTCTTTTTTCTTAG  450

seq1  TTCCAAACATGTTTATCCTTTTTTAGGTTTGGATTTACTAGGTCGTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACATGTTTATCCTTTTTTAGGTTTGGATTTACTAGGTCGTGAAT  500

seq1  GTTGGTTTACAGTCACAGTTTTCACCAAAGTAGCCACTGGCTCCCAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTACAGTCACAGTTTTCACCAAAGTAGCCACTGGCTCCCAATAC  550

seq1  AGTTCCAGTTTCACATAAACACCAGGACTAAATGGAGGCTTCTTTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGTTTCACATAAACACCAGGACTAAATGGAGGCTTCTTTGCCTC  600

seq1  TGCTCAGCAGCTCAGCATGTGCCCTGGCTGATGGGATGTGTTTTCAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCAGCTCAGCATGTGCCCTGGCTGATGGGATGTGTTTTCAAGTT  650

seq1  GCATCACATATCTTATTCAGGTTTACTATGGCTGCCATCAACCACCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACATATCTTATTCAGGTTTACTATGGCTGCCATCAACCACCATGA  700

seq1  CCAAAGAAGGAAGAAAGGACCTATGTGGCTAATGCTTCCACATCACAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAGGAAGAAAGGACCTATGTGGCTAATGCTTCCACATCACAGTC  750

seq1  CATCATCAAAACAAATCAAAACAGGAACCCAAACAGGACAGGAATCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCAAAACAAATCAAAACAGGAACCCAAACAGGACAGGAATCTGGA  800

seq1  GACAGGAACTGATGCAGAGGTCATGGAGGTGTGTTGCTTACTGGCTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAACTGATGCAGAGGTCATGGAGGTGTGTTGCTTACTGGCTTGTT  850

seq1  CCTTGTAGCTTGTTGATTCTAATTTCTTTC-TTTTTTTTTCCAAAAACAT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTTGTAGCTTGTTGATTCTAATTTCTTTCTTTTTTTTTTCCAAAAACAT  900

seq1  TTTTATTAGATA-TTTTCTTCATTTACATTTCAAATGCTATCTGAAAGTC  948
      |||||||||||| |||||||||||||||||   |||||||||||||||| 
seq2  TTTTATTAGATATTTTTCTTCATTTACATT--CAATGCTATCTGAAAGT-  947

seq1  CCCTATGCCCTCCCCCTGCCCTGCTCCCCAATGCACCCACTCCCGCATCC  998
      ||||||| ||| ||||||||||||| |||||||||||||||||||||| |
seq2  CCCTATG-CCTTCCCCTGCCCTGCT-CCCAATGCACCCACTCCCGCATTC  995

seq1  TGACCTTGCCATTCCCCTCTACTGGGGTATATAATCTTCGCAAGTCCAAG  1048
      ||||  |||   |||||||||||||||||||||||| |||| ||| ||||
seq2  TGAC--TGC--ATCCCCTCTACTGGGGTATATAATC-TCGC-AGT-CAAG  1038

seq1  GGCCTCTCCTCCCAATGATGGCCGACTAGGCCATCTAATTTCCTTTAGAA  1098
      || |||||||||  ||||||  |||||| || |||||  |||  ||||| 
seq2  GG-CTCTCCTCC--ATGATG--CGACTA-GCAATCTA--TTC--TTAGA-  1077

seq1  CCCAAGGCCATCAGCTAAAGGTGACCTCACTCACAATAAGCTGG  1142
        |||||||||||||| |||||   ||||||||     ||||||
seq2  --CAAGGCCATCAGCT-AAGGT--ACTCACTCA----TAGCTGG  1112