BAC Information

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BAC

Clone NameB6Ng01-243P03
Chromosome4 (Build37)
Map Location 133,864,438 - 134,008,871
singlet/doubletdoublet
Overlap geneTrim63, Slc30a2, Extl1, LOC434166, Pafah2
Upstream geneWdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l
Downstream geneStmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243P03.bB6Ng01-243P03.g
ACCGA053200GA053201
length8441,064
definitionB6Ng01-243P03.b B6Ng01-243P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,008,029 - 134,008,871)(133,864,438 - 133,865,502)
sequence
gaattctctgcaacttctttttttttttttttttttttttttagaaaaat
ctggcaggtttcagcaacaaaccaaccaataatgtagtgaaaaactgtca
aaatgtgtctctgattcactgcctcttctatatgacaaaggaggacgtgc
ttatagtttttccattaaaaatcatacacaaagctgggtgtggccgtatg
tgtctcagggtctgggaggctgaggccagaggattgcaagtgccaggcta
gtcagggttgcacagggtgacctctacagacaaaaacatcaccaagaaga
cttcatttcattccataaccctaggtctgtttgggattctgttaggtatt
agcaatgcagaagtcaacgtgaaaaacagatttactaaatcctgggtttg
ggaaccagtacttcttcctttggggagtgtggcacgagacagttattgga
atgaggacaatggctttttaaaagtcactgagattatgtagtagaaaaca
atgtagggcaacttaaagaccaacaatggagggatcggattgaaaaggta
tggtaggtgcctacaatgcccgtcataatatcataaaaaaagagtgttta
gaaaaaggcgttagggatgagggaaaatgctcataaggttaggaaaagct
ggttaggaaacggtgccatgtgattggaccaccataccagtaacagcata
aacaaacagggctgacaggtggctcagcgggtaaaggtgcttgccctctt
gccccagaagccaggttggatccctggaacccactaaaggtagaaggaga
ggatgagctctcatgttacatggttgtccacggggggggggggg
gaattcagtcacagtgagaggatctgcctatagagactcgccactgagtc
tgacctgagttctattcctggccccacacggtggagggggagaaactgat
ttttgtgggttgtccttggacctccacacacttatgcacatacgtgcaaa
ctaaataagtaaaaattaatttaaaattcagatagtatgtaacttccagg
ccacctcacaaaaggcactgccattgtcacttgctttgagccatggttta
ggggtgaccaggggatctgtagacaggtacatgagctaagggctacagct
tgtaaactctgaaagtgactcccctagctcggataaactggcctgtagtc
cagtcaacgtctttaccacagactcttagaggccctgagccagaaacacc
aactcttgactaatgtgatccaccaaaactgtgaaaatcagtgttctatt
atggtttaaagttaaatttggggataacttgaaaggcagcaaaagacaat
ctatagacggaggttgtagggtgagcagtggaagctgaggtgggcggaca
caagtgccagcctgggctgtgtatagagacctcacctcaaaaagaggtga
agccagcaggtgtggcggctcacacaggaaatctcagacctccagaggct
gtggcaggagaatcggtgtgaatcgaagatcagcctgggttatactgcaa
gttcctggtcagtcgcgcttacatattgagaccgggtgtagctcaattgg
tagggtgcttgcccagcatctgtgaagccctgggctccatcctcagaacc
acagtaggccagatgcaatggtacacacctatgatctcaacaggcaggag
tgaaggccggagaatcaggagtttaagggtatcctcagccacacactgag
ctcaaagccagtctgggatgagacgtattctcagtgaacaaacacacaaa
catatctctagaccagcaaggtccacgagcacatggtagccagcctgcca
ggatgatacatttttgtgaagaaccatcatggatcagacatagatagctt
ccctcttttgtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134008029_134008871
seq2: B6Ng01-243P03.b_43_886 (reverse)

seq1  CCCCCCCCCCCCCGTGGACAACCATGTAACATG-GAGCTCATCCTCTCCT  49
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCCCCCCCCCCCGTGGACAACCATGTAACATGAGAGCTCATCCTCTCCT  50

seq1  TCTACCTTTAGTGGGTTCCAGGGATCCAACCTGGCTTCTGGGGCAAGAGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTTAGTGGGTTCCAGGGATCCAACCTGGCTTCTGGGGCAAGAGG  100

seq1  GCAAGCACCTTTACCCGCTGAGCCACCTGTCAGCCCTGTTTGTTTATGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACCTTTACCCGCTGAGCCACCTGTCAGCCCTGTTTGTTTATGCT  150

seq1  GTTACTGGTATGGTGGTCCAATCACATGGCACCGTTTCCTAACCAGCTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGGTATGGTGGTCCAATCACATGGCACCGTTTCCTAACCAGCTTT  200

seq1  TCCTAACCTTATGAGCATTTTCCCTCATCCCTAACGCCTTTTTCTAAACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACCTTATGAGCATTTTCCCTCATCCCTAACGCCTTTTTCTAAACA  250

seq1  CTCTTTTTTTATGATATTATGACGGGCATTGTAGGCACCTACCATACCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTTATGATATTATGACGGGCATTGTAGGCACCTACCATACCTT  300

seq1  TTCAATCCGATCCCTCCATTGTTGGTCTTTAAGTTGCCCTACATTGTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCGATCCCTCCATTGTTGGTCTTTAAGTTGCCCTACATTGTTTT  350

seq1  CTACTACATAATCTCAGTGACTTTTAAAAAGCCATTGTCCTCATTCCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACATAATCTCAGTGACTTTTAAAAAGCCATTGTCCTCATTCCAAT  400

seq1  AACTGTCTCGTGCCACACTCCCCAAAGGAAGAAGTACTGGTTCCCAAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTCGTGCCACACTCCCCAAAGGAAGAAGTACTGGTTCCCAAACC  450

seq1  CAGGATTTAGTAAATCTGTTTTTCACGTTGACTTCTGCATTGCTAATACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTAGTAAATCTGTTTTTCACGTTGACTTCTGCATTGCTAATACC  500

seq1  TAACAGAATCCCAAACAGACCTAGGGTTATGGAATGAAATGAAGTCTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAATCCCAAACAGACCTAGGGTTATGGAATGAAATGAAGTCTTCT  550

seq1  TGGTGATGTTTTTGTCTGTAGAGGTCACCCTGTGCAACCCTGACTAGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGTTTTTGTCTGTAGAGGTCACCCTGTGCAACCCTGACTAGCCT  600

seq1  GGCACTTGCAATCCTCTGGCCTCAGCCTCCCAGACCCTGAGACACATACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGCAATCCTCTGGCCTCAGCCTCCCAGACCCTGAGACACATACG  650

seq1  GCCACACCCAGCTTTGTGTATGATTTTTAATGGAAAAACTATAAGCACGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCCAGCTTTGTGTATGATTTTTAATGGAAAAACTATAAGCACGT  700

seq1  CCTCCTTTGTCATATAGAAGAGGCAGTGAATCAGAGACACATTTTGACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTGTCATATAGAAGAGGCAGTGAATCAGAGACACATTTTGACAG  750

seq1  TTTTTCACTACATTATTGGTTGGTTTGTTGCTGAAACCTGCCAGATTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACTACATTATTGGTTGGTTTGTTGCTGAAACCTGCCAGATTTTT  800

seq1  CTAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTTGCAGAGAATTC  843
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTTGCAGAGAATTC  844

seq1: chr4_133864438_133865502
seq2: B6Ng01-243P03.g_66_1129

seq1  GAATTCAGTCACAGTGAGAGGATCTGCCTATAGAGACTCGCCACTGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCACAGTGAGAGGATCTGCCTATAGAGACTCGCCACTGAGTC  50

seq1  TGACCTGAGTTCTATTCCTGGCCCCACACGGTGGAGGGGGAGAAACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAGTTCTATTCCTGGCCCCACACGGTGGAGGGGGAGAAACTGAT  100

seq1  TTTTGTGGGTTGTCCTTGGACCTCCACACACTTATGCACATACGTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGGTTGTCCTTGGACCTCCACACACTTATGCACATACGTGCAAA  150

seq1  CTAAATAAGTAAAAATTAATTTAAAATTCAGATAGTATGTAACTTCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAGTAAAAATTAATTTAAAATTCAGATAGTATGTAACTTCCAGG  200

seq1  CCACCTCACAAAAGGCACTGCCATTGTCACTTGCTTTGAGCCATGGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCACAAAAGGCACTGCCATTGTCACTTGCTTTGAGCCATGGTTTA  250

seq1  GGGGTGACCAGGGGATCTGTAGACAGGTACATGAGCTAAGGGCTACAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGACCAGGGGATCTGTAGACAGGTACATGAGCTAAGGGCTACAGCT  300

seq1  TGTAAACTCTGAAAGTGACTCCCCTAGCTCGGATAAACTGGCCTGTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTCTGAAAGTGACTCCCCTAGCTCGGATAAACTGGCCTGTAGTC  350

seq1  CAGTCAACGTCTTTACCACAGACTCTTAGAGGCCCTGAGCCAGAAACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACGTCTTTACCACAGACTCTTAGAGGCCCTGAGCCAGAAACACC  400

seq1  AACTCTTGACTAATGTGATCCACCAAAACTGTGAAAATCAGTGTTCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGACTAATGTGATCCACCAAAACTGTGAAAATCAGTGTTCTATT  450

seq1  ATGGTTTAAAGTTAAATTTGGGGATAACTTGAAAGGCAGCAAAAGACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTAAAGTTAAATTTGGGGATAACTTGAAAGGCAGCAAAAGACAAT  500

seq1  CTATAGACGGAGGTTGTAGGGTGAGCAGTGGAAGCTGAGGTGGGCGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACGGAGGTTGTAGGGTGAGCAGTGGAAGCTGAGGTGGGCGGACA  550

seq1  CAAGTGCCAGCCTGGGCTGTGTATAGAGACCTCACCTCAAAAAGAGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCCAGCCTGGGCTGTGTATAGAGACCTCACCTCAAAAAGAGGTGA  600

seq1  AGCCAGCAGGTGTGGCGGCTCACACAGGAAATCTCAGACCTCCAGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCAGGTGTGGCGGCTCACACAGGAAATCTCAGACCTCCAGAGGCT  650

seq1  GTGGCAGGAGAATCGGTGTGAATCGAAGATCAGCCTGGGTTATACTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGAGAATCGGTGTGAATCGAAGATCAGCCTGGGTTATACTGCAA  700

seq1  GTTCCTGGTCAGTCGCGCTTACATATTGAGACCGGGTGTAGCTCAATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGTCAGTCGCGCTTACATATTGAGACCGGGTGTAGCTCAATTGG  750

seq1  TAGGGTGCTTGCCCAGCATCTGTGAAGCCCTGGGCTCCATCCTCAGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGCTTGCCCAGCATCTGTGAAGCCCTGGGCTCCATCCTCAGAACC  800

seq1  ACAGTAGGCCAGATGCAATGGTACACACCTATGATCTCAACAGGCAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGCCAGATGCAATGGTACACACCTATGATCTCAACAGGCAGGAG  850

seq1  TGAAGGCCGGAGAATCAGGAGTTTAAGGGTATCCTCAGCCACACACTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCGGAGAATCAGGAGTTTAAGGGTATCCTCAGCCACACACTGAG  900

seq1  CTCAAAGCCAGTCTGGGATGAGACGTATTCTCAGTGAACAAACACACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCCAGTCTGGGATGAGACGTATTCTCAGTGAACAAACACACAAA  950

seq1  CATATCTCTAGACCAGCAAGGTCCACCGAGCACATGGTAGCCAGCCCTGC  1000
      ||||||||||||||||||||||||| |||||||||||||||||| |||| 
seq2  CATATCTCTAGACCAGCAAGGTCCA-CGAGCACATGGTAGCCAG-CCTG-  997

seq1  CCAGGATGATACA-TTTTGTGAAGAACCATCATGGATCAGACATAGATAG  1049
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGATACATTTTTGTGAAGAACCATCATGGATCAGACATAGATAG  1047

seq1  GCTCCCTC-TTTGTGCT  1065
        |||||| ||||||||
seq2  CTTCCCTCTTTTGTGCT  1064