BAC Information

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BAC

Clone NameB6Ng01-244I01
Chromosome4 (Build37)
Map Location 66,959,527 - 66,960,623
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244I01.bB6Ng01-244I01.g
ACCGA053621GA053622
length1,1021,098
definitionB6Ng01-244I01.b B6Ng01-244I01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctccacgtgtactttttccttggtagtttagtccccaggaacac
tggaggaagtgtctggttggttgatattgttcttcctgtgggtttacaaa
cccattcaggtccttcagtccttgtcctaattcctccagtggtgtcccag
cgctaagtctgatggttggctgtgtggatcttcttctgtattgatcaggc
tctggcagaaacttgtcaggagacaactgtaccaggctcctgtcagcaag
cacttcttggtatcagcaatagttttgaataggtttgttgtatattctgc
cttccctcccacccccagatggttttggcttctttgtcaaagatcaagtg
accttaggtgtgtgggttgatttctgggtctttgatttacctgcctgtac
ctgtaccagcacatgcagtttttatcacccttaccctgtagtagaggttg
aagtgagcaatggtgacttccccagaatttttcttaatgttgagaatagt
ttttcctgtcctgggttttttgttgttcaaaatgaatttgagaaaattgc
tctttctaactgtgtgaagaattgtgttggaattttaatggtgattgcat
tgaatttgtagattgcttttggtaagatggtcatttttactatgttaacc
ctgccagtcaatgaccatgagtgatctttccaaattctgaggtcttctcc
aatttcttttttctgagtcttgaagttctcattatacagatttttcactg
gcttggtttaaagtcacaccaaggtatgttacattatttgtaaccattgt
gaagagtgtcatcttcgtaatttctttctcatctcatttatcctttgagt
agagaatggccactgatttgagttaattttataccaaagcacattgctga
agtagtttatcagcagttgggtttctctggtgaaatttttggaataattt
taagtatactatcatatcatcttgtgagtagtgcttggcttcaatggggt
gggtccagccttggtagagaagaatgcaaatggattcattctctgatctt
cctctgacacagctccaggttataattggttacaagggaacttctcccac
at

gaattcataaaactcccctctgaggaaaatcaaagtataataaaagacaa
aggcatcatggttttgacctaggtctctgaaagtccatgttggttcatgt
tggctcattttctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttcacaatgctccat
tggctgacccaccttatgtcactgagtaaatagctagatctacataccag
cttaaaaaggattgagtagaaaaaatattaagatgtttccctgactatac
gcaccctgattataattacagaaataaagaaaatcatgaatgattctctt
agttactttctgtgttactggaacaaaacttgacacaggtgatttaggga
atgaaggaagtttttcatttggcttgtagcgctagaaggttatggcaggg
aagtcatgacaatagggccttgatgttgattgtgcttattgtcagaaaac
agagaacgattcatacttgcacacagctaggtttttttctgtttatatag
accagatgccaactcctgggaatagtgttctagcttatagggtgggtctt
cttatctgaattaatctaatctaggaaaactctcagactattacagatgc
aattttcatctaagtaatttctctggctatatcagtcttgagaattttct
cctgggttactctagactctgtcaagttaacaatatttattgtcacagga
atgaaaatgtctaattgcgtagcattggcacaagttgagcttgtgagttt
cattctgcttctaggcctttagattttatttttgtattttctaataacca
gtaccctagttatttttttgccattgtcttcatctactactttaggtgtg
tttgtaccttttatatacacatttcgtatatatctggtataaattaaata
cattgggttagtataagttctttgcttttaaggtacagggtgtggatttt
tgtactatttaaaatgaaggtctgaactatgagtcatgccttggacaaca
caaaggccactttcagcataatggccttgccagtcattgccagactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66959527_66960623
seq2: B6Ng01-244I01.g_66_1163

seq1  GAATTCATAAAACTCCCCTCTGAGGAAAATCAAAGTATAATAAAAGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAACTCCCCTCTGAGGAAAATCAAAGTATAATAAAAGACAA  50

seq1  AGGCATCATGGTTTTGACCTAGGTCTCTGAAAGTCCATGTTGGTTCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCATGGTTTTGACCTAGGTCTCTGAAAGTCCATGTTGGTTCATGT  100

seq1  TGGCTCATTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  150

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCACAATGCTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCACAATGCTCCAT  200

seq1  TGGCTGACCCACCTTATGTCACTGAGTAAATAGCTAGATCTACATACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGACCCACCTTATGTCACTGAGTAAATAGCTAGATCTACATACCAG  250

seq1  CTTAAAAAGGATTGAGTAGAAAAAATATTAAGATGTTTCCCTGACTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAGGATTGAGTAGAAAAAATATTAAGATGTTTCCCTGACTATAC  300

seq1  GCACCCTGATTATAATTACAGAAATAAAGAAAATCATGAATGATTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTGATTATAATTACAGAAATAAAGAAAATCATGAATGATTCTCTT  350

seq1  AGTTACTTTCTGTGTTACTGGAACAAAACTTGACACAGGTGATTTAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTCTGTGTTACTGGAACAAAACTTGACACAGGTGATTTAGGGA  400

seq1  ATGAAGGAAGTTTTTCATTTGGCTTGTAGCGCTAGAAGGTTATGGCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAAGTTTTTCATTTGGCTTGTAGCGCTAGAAGGTTATGGCAGGG  450

seq1  AAGTCATGACAATAGGGCCTTGATGTTGATTGTGCTTATTGTCAGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGACAATAGGGCCTTGATGTTGATTGTGCTTATTGTCAGAAAAC  500

seq1  AGAGAACGATTCATACTTGCACACAGCTAGGTTTTTTTCTGTTTATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACGATTCATACTTGCACACAGCTAGGTTTTTTTCTGTTTATATAG  550

seq1  ACCAGATGCCAACTCCTGGGAATAGTGTTCTAGCTTATAGGGTGGGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGCCAACTCCTGGGAATAGTGTTCTAGCTTATAGGGTGGGTCTT  600

seq1  CTTATCTGAATTAATCTAATCTAGGAAAACTCTCAGACTATTACAGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGAATTAATCTAATCTAGGAAAACTCTCAGACTATTACAGATGC  650

seq1  AATTTTCATCTAAGTAATTTCTCTGGCTATATCAGTCTTGAGAATTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATCTAAGTAATTTCTCTGGCTATATCAGTCTTGAGAATTTTCT  700

seq1  CCTGGGTTACTCTAGACTCTGTCAAGTTAACAATATTTATTGTCACAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTACTCTAGACTCTGTCAAGTTAACAATATTTATTGTCACAGGA  750

seq1  ATGAAAATGTCTAATTGCGTAGCATTGGCACAAGTTGAGCTTGTGAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGTCTAATTGCGTAGCATTGGCACAAGTTGAGCTTGTGAGTTT  800

seq1  CATTCTGCTTCTAGGCCTTTAGATTTTATTTTTGTATTTTCTAATAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCTTCTAGGCCTTTAGATTTTATTTTTGTATTTTCTAATAACCA  850

seq1  GTACCCTAGTTATTTTTTTGCCATTGTCTTCATCTACTACTTTAGGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTAGTTATTTTTTTGCCATTGTCTTCATCTACTACTTTAGGTGTG  900

seq1  TTTGTACCTTTTATATACACATTTCGTATATATCTGGTATAAATTAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCTTTTATATACACATTTCGTATATATCTGGTATAAATTAAATA  950

seq1  CATTGGTTTAGTATAAGTTCTTTGCTTTTAAGTTACAGGGTGTGGATTTT  1000
      |||||| ||||||||||||||||||||||||| ||||||||||||| |||
seq2  CATTGGGTTAGTATAAGTTCTTTGCTTTTAAGGTACAGGGTGTGGA-TTT  999

seq1  TTGTACTATTTAAAATGAAGGTCTGACCTATGAGTCATTGCCTTGGACAA  1050
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  TTGTACTATTTAAAATGAAGGTCTGAACTATGAGTCA-TGCCTTGGACAA  1048

seq1  CACAAAGGCCACTTTCAGCATTATTG-CTTG-CAGTCATTG-CAGACTGT  1097
      ||||||||||||||||||||| || | |||| ||||||||| ||||||||
seq2  CACAAAGGCCACTTTCAGCATAATGGCCTTGCCAGTCATTGCCAGACTGT  1098


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