BAC Information

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BAC

Clone NameB6Ng01-244N22
Chromosome4 (Build37)
Map Location 27,107,376 - 27,108,437
singlet/doubletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244N22.bB6Ng01-244N22.g
ACCGA053900GA053901
length9771,147
definitionB6Ng01-244N22.b B6Ng01-244N22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttaaatgaggttatttgatt
ttctggagtccaccttcttgagttctttatatatattcgatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtctttttccttgcagaagctttgcaatttta
tgaggtcccatttgacaattctagatcttatagcacaagccattgctgtt
ctattcaggaatttttcccctgtaccttcttcgagggttttccctacttt
ctcctctataagtttcagtgtctctggctttatgtggagttccttaatcc
acttaaatttgaccttagtacaaggagataggaatggatcaatttgcatt
cttctacatgataactgccagtcgtgccagcaccatttgttgaaaatgct
gtcttcttttccactggatggttttagctctcttgttgaagatcaagtga
caataggtgtgtgggttcatttccgagtcttcaattctattccattggtc
tacttttctgtccctataccagtaccatgcagtttttatcacaattgctc
tgtagtacagctttaggtcaggcatggtgattccaccagaggttctttta
tccttgagaagagtttttgctatcctaggttttttgttattccagatgaa
tttgcaggttgccctttctaattcgttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatatccatttgt
actatattgatcctgccattccatgagcatgggagatctttccatcttct
gagatcttctgcttcctattccttttagatcttttgtctctagagagagg
tataataaagacatcccatttataaatataagtcctccaaagtctctgct
gtcaacatatgttttctctttgagtct
gaattctttgtttagctctgtaccccatttttaatagggttatttgattt
tctggagtccatcttcttgagtggatcaaggaactccacataaaatcaga
aacactgaaagttatagaggagaaagtggggaagagcctcaaacatatgg
gcacaagcgaaatattcctgaacagaataccaatggctagtgctgtaaga
tcaagaattgacaaatgggaccccataaaattgcaaagcttctataaggc
aaagggcactgccaaagagacaaaaaggcaatcagcagattaggaaaaga
tctttaccaatcctaaatctgatagagggctagtatccaatatatacaaa
gaactcaagaagttatactccagagaaccaaatttattcactattttaca
ttttaagatcccttcctaagtaactgcctcccagcattggctggggcttt
tcatatcaattaccatgaagaaaataactcctacaaatatgcccacagga
taatgcaagatagataatcactcattgattttctctttcaaatgagaatg
tagattatatcaattttgaaattaaaaggtaaccctcacactatttaacc
tgaaaacatgttagcagagtaggattcagattaagaagaggggcataaag
aaggatatacagggaaagaaagttaaaaacaaggccatttgataggtagt
ctggagaccacatacaggaaaatcttccaaaatatatacttataataaca
caatctaaataaagtcgccaaaaataaaagagacgaactctaggtggcca
tttggtaacactatatgaaaaaaaaatgtgaggggctcagtaaagaaacc
aaaaatgcctgctctgaggatataaaaatgatgtttccatgtaaaagaat
ccagtaaatccatatttatcaccctatacaaagctcaactacaagtagat
caaggacctacacatacaaccacatgcattaaatctcataagaagagaaa
tatgggaaatatcttggatgcattgggtgcagaacgtagtagctcaggct
tagatcaaccatgcctaatggtgcatcataaataacaagctcccttatgt
aagcacaccttcgatgacaaatgacagcttacatattgggaataatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27107376_27108437
seq2: B6Ng01-244N22.g_160_1212

seq1  ATCAGAAACACTGAAAGTTATAGAGGAGAAAGTGGGGAAGAGCCTCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAACACTGAAAGTTATAGAGGAGAAAGTGGGGAAGAGCCTCAAAC  50

seq1  ATATGGGCACAAGCGAAATATTCCTGAACAGAATACCAATGGCTAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGCACAAGCGAAATATTCCTGAACAGAATACCAATGGCTAGTGCT  100

seq1  GTAAGATCAAGAATTGACAAATGGGACCCCATAAAATTGCAAAGCTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATCAAGAATTGACAAATGGGACCCCATAAAATTGCAAAGCTTCTA  150

seq1  TAAGGCAAAGGGCACTGCCAAAGAGACAAAAAGGCAATCAGCAGATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAAAGGGCACTGCCAAAGAGACAAAAAGGCAATCAGCAGATTAGG  200

seq1  AAAAGATCTTTACCAATCCTAAATCTGATAGAGGGCTAGTATCCAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCTTTACCAATCCTAAATCTGATAGAGGGCTAGTATCCAATATA  250

seq1  TACAAAGAACTCAAGAAGTTATACTCCAGAGAACCAAATTTATTCACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAACTCAAGAAGTTATACTCCAGAGAACCAAATTTATTCACTAT  300

seq1  TTTACATTTTAAGATCCCTTCCTAAGTAACTGCCTCCCAGCATTGGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTTAAGATCCCTTCCTAAGTAACTGCCTCCCAGCATTGGCTGG  350

seq1  GGCTTTTCATATCAATTACCATGAAGAAAATAACTCCTACAAATATGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCATATCAATTACCATGAAGAAAATAACTCCTACAAATATGCCC  400

seq1  ACAGGATAATGCAAGATAGATAATCACTCATTGATTTTCTCTTTCAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATAATGCAAGATAGATAATCACTCATTGATTTTCTCTTTCAAATG  450

seq1  AGAATGTAGATTATATCAATTTTGAAATTAAAAGGTAACCCTCACACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTAGATTATATCAATTTTGAAATTAAAAGGTAACCCTCACACTAT  500

seq1  TTAACCTGAAAACATGTTAGCAGAGTAGGATTCAGATTAAGAAGAGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTGAAAACATGTTAGCAGAGTAGGATTCAGATTAAGAAGAGGGGC  550

seq1  ATAAAGAAGGATATACAGGGAAAGAAAGTTAAAAACAAGGCCATTTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAGGATATACAGGGAAAGAAAGTTAAAAACAAGGCCATTTGATA  600

seq1  GGTAGTCTGGAGACCACATACAGGAAAATCTTCCAAAATATATACTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCTGGAGACCACATACAGGAAAATCTTCCAAAATATATACTTATA  650

seq1  ATAACACAATCTAAATAAAGTCGCCAAAAATAAAAGAGACGAACTCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAATCTAAATAAAGTCGCCAAAAATAAAAGAGACGAACTCTAGG  700

seq1  TGGCCATTTGGTAACACTATATGAAAAAAAAATGTGAGGGGCTCAGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTTGGTAACACTATATGAAAAAAAAATGTGAGGGGCTCAGTAAA  750

seq1  GAAACCAAAAATGCCTGCTCTGAGGATATAAAAATGATGTTTCCATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAAAAATGCCTGCTCTGAGGATATAAAAATGATGTTTCCATGTAA  800

seq1  AAGAATCCAGTAAATCCATATTTATCACCCTATACAAAGCTCAACTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCAGTAAATCCATATTTATCACCCTATACAAAGCTCAACTACAA  850

seq1  GTAGATCAAGGACCTACACATACAACCACATGCATTAAATCTCAT-AGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAGATCAAGGACCTACACATACAACCACATGCATTAAATCTCATAAGAA  900

seq1  GAGAAATAT-GGAAATATCCTTGAATGCATT-GGTGCAGAACGTAGTAGC  947
      ||||||||| |||||||| |||| ||||||| ||||||||||||||||||
seq2  GAGAAATATGGGAAATAT-CTTGGATGCATTGGGTGCAGAACGTAGTAGC  949

seq1  TCAGGCTTTAAGATCAACAATTGCTAAATGGTGCATCATAAAATTACAAA  997
      ||||||||  |||||||| | |||  ||||||||||||||||  ||  ||
seq2  TCAGGCTT--AGATCAACCA-TGCCTAATGGTGCATCATAAA--TAACAA  994

seq1  GCTCCCCTAATGTAAAGCACACTCTCAATAGGACAAAATGACAGCCTACA  1047
      ||| |||| |||| ||||||||  || ||  ||| |||||||||| ||||
seq2  GCT-CCCTTATGT-AAGCACACCTTCGAT--GAC-AAATGACAGCTTACA  1039

seq1  TATTGGGAAATAATC  1062
      ||||||| |||||||
seq2  TATTGGG-AATAATC  1053