BAC Information

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BAC

Clone NameB6Ng01-245A14
Chromosome4 (Build37)
Map Location 51,473,416 - 51,546,041
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245A14.bB6Ng01-245A14.g
ACCGA054025GA054026
length1,129447
definitionB6Ng01-245A14.b B6Ng01-245A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,473,416 - 51,474,565)(51,545,591 - 51,546,041)
sequence
gaattcataagacagcctcagcattctcattagaaacagcatgcccaaaa
ttcacactagacctgcagactcctcagccagtggacacagagacctagta
atatatttccattgtccttgttgctatactcaggtcccaaatgaaaagct
catagattttgatgaggattaattaccaccctgtttcccatgttaggagc
atgttaggtcctctgagcctgatcctacaatattgccttatgattagttt
atcagaactaatgatggtttaagtgtgaggcatgaaaacttaaagccaat
tgcctgggaattttctcactgtgactacaggtccctaagtctatgtccat
agcttaaaaatgctgttgagatttcaagaacaataaggctaattaaaaaa
taaggtgcttgaatattgaactattttgttaatataaagattgaaaaaga
aatgtataagcctgactattagaagtataaagtagttactttcagaaaga
aagaaaaatgataactataaagagaaaagaagagcgcttatatgatgctc
ctggggttgattttaacagttacacagaactgccaagagtgcagacccgg
gctgccatactattcagtgtttgtctgaaaatatctttttttttaatgga
tctgtaggaggcattggaaatggctcagtagataaaatcaacttctacac
ttgttaaaacaaaaacaaaaacaaaaaacagctttttctcctagaatgct
cctagaggttcataacgcttgttaactttcatccaagaggattcattcct
ctttcatagcttcaggagacaccaagcagacatatgatatacatacaagc
atgctgcttggagtattttctatgtaaaccatggggaaaaaagaagaaag
aataaggacaacaggagaagcaatagccagctcatctaggaacacagagg
agctcctgagcatgctaaagcatgctctcattttatttgcaaattttata
tccattgaaagcatttattttaccataagttgtcagatatttaaaacatc
atctctacataggtagacatatatacagggtgattagatcaggtggaaaa
aaatatctgcattgtaacagtgagagtga

attaaaatgaactaaactttctacagctgtgtcagtgttgtagaaaactt
tgagtgcaccagtaggcacttgcattcaaaatcaataagacgatctcttt
caactcccatgaaaaattcttcttatgttaatttttgatacatttataca
ttgttatgatgcattctggttcttccctcaactcccttttattttcctcc
tacctctttcaacaagaccctccaaactcccttcctaccgttctcattcc
ccctctcctcgttctcattccccctctcctcctgtttgtgtgtgtgtgtt
tgtgtatttgtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtatggtttaatttaggtcatttgtgtgaccat
tgacttgtgattttttttttgggaatatggtgagccctcatattgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_51473416_51474565
seq2: B6Ng01-245A14.b_46_1174

seq1  GAATTCATAAGACAGCCTCAGCATTCTCATTAGAAACAGCATGCCCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGACAGCCTCAGCATTCTCATTAGAAACAGCATGCCCAAAA  50

seq1  TTCACACTAGACCTGCAGACTCCTCAGCCAGTGGACACAGAGACCTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTAGACCTGCAGACTCCTCAGCCAGTGGACACAGAGACCTAGTA  100

seq1  ATATATTTCCATTGTCCTTGTTGCTATACTCAGGTCCCAAATGAAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCCATTGTCCTTGTTGCTATACTCAGGTCCCAAATGAAAAGCT  150

seq1  CATAGATTTTGATGAGGATTAATTACCACCCTGTTTCCCATGTTAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTTTGATGAGGATTAATTACCACCCTGTTTCCCATGTTAGGAGC  200

seq1  ATGTTAGGTCCTCTGAGCCTGATCCTACAATATTGCCTTATGATTAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGGTCCTCTGAGCCTGATCCTACAATATTGCCTTATGATTAGTTT  250

seq1  ATCAGAACTAATGATGGTTTAAGTGTGAGGCATGAAAACTTAAAGCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACTAATGATGGTTTAAGTGTGAGGCATGAAAACTTAAAGCCAAT  300

seq1  TGCCTGGGAATTTTCTCACTGTGACTACAGGTCCCTAAGTCTATGTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGAATTTTCTCACTGTGACTACAGGTCCCTAAGTCTATGTCCAT  350

seq1  AGCTTAAAAATGCTGTTGAGATTTCAAGAACAATAAGGCTAATTAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAAAATGCTGTTGAGATTTCAAGAACAATAAGGCTAATTAAAAAA  400

seq1  TAAGGTGCTTGAATATTGAACTATTTTGTTAATATAAAGATTGAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGCTTGAATATTGAACTATTTTGTTAATATAAAGATTGAAAAAGA  450

seq1  AATGTATAAGCCTGACTATTAGAAGTATAAAGTAGTTACTTTCAGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAAGCCTGACTATTAGAAGTATAAAGTAGTTACTTTCAGAAAGA  500

seq1  AAGAAAAATGATAACTATAAAGAGAAAAGAAGAGCGCTTATATGATGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGATAACTATAAAGAGAAAAGAAGAGCGCTTATATGATGCTC  550

seq1  CTGGGGTTGATTTTAACAGTTACACAGAACTGCCAAGAGTGCAGACCCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTGATTTTAACAGTTACACAGAACTGCCAAGAGTGCAGACCCGG  600

seq1  GCTGCCATACTATTCAGTGTTTGTCTGAAAATATCTTTTTTTTTAATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATACTATTCAGTGTTTGTCTGAAAATATCTTTTTTTTTAATGGA  650

seq1  TCTGTAGGAGGCATTGGAAATGGCTCAGTAGATAAAATCAACTTCTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGAGGCATTGGAAATGGCTCAGTAGATAAAATCAACTTCTACAC  700

seq1  TTGTTAAAACAAAAACAAAAACAAAAAACAGCTTTTTCTCCTAGAATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAACAAAAACAAAAACAAAAAACAGCTTTTTCTCCTAGAATGCT  750

seq1  CCTAGAGGTTCATAACGCTTGTTAACTTTCATCCAAGAGGATTCATTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGTTCATAACGCTTGTTAACTTTCATCCAAGAGGATTCATTCCT  800

seq1  CTTTCATAGCTTCAGGAGACACCAAGCAGACATATGATATACATACAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAGCTTCAGGAGACACCAAGCAGACATATGATATACATACAAGC  850

seq1  ATGCTGCTTGGAGTATTTTCTATGTAAACCATGGGGAAAAAAGAAGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTTGGAGTATTTTCTATGTAAACCATGGGGAAAAAAGAAGAAAG  900

seq1  AATAAGGACAACAAGGAGAAGCAATAGCCAGCTCATCTAGGAACACAGAG  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATAAGGACAAC-AGGAGAAGCAATAGCCAGCTCATCTAGGAACACAGAG  949

seq1  GAGCTCCTGAGCATGCTAAAAGCATGCTCTCATTTTATTTGCAAAATTTT  1000
      ||||||||||||||||| |||||||||||||||||||||||||||  |||
seq2  GAGCTCCTGAGCATGCT-AAAGCATGCTCTCATTTTATTTGCAAA--TTT  996

seq1  TATAATCCATTGAAAGCATTTATTTTACCCATAAGTTGTTCAGAATATTT  1050
      ||| ||||||||||||||||||||||| |||||||||| |||| ||| ||
seq2  TAT-ATCCATTGAAAGCATTTATTTTA-CCATAAGTTG-TCAG-ATA-TT  1041

seq1  TAAAACAATCATCTCTTACATAGTTAGAAACAATATAATACAGGGGTTGA  1100
      |||||| |||||||| ||||||| ||||    |||| ||||||||  |||
seq2  TAAAAC-ATCATCTC-TACATAGGTAGA---CATAT-ATACAGGG--TGA  1083

seq1  -TAGATTCCAGGGTGGGATAAAATATCTGCAATTTGTAACAGTGAGAGTG  1149
       |||||  || ||||| | ||||||||||||  |||||||||||||||||
seq2  TTAGAT--CA-GGTGGAAAAAAATATCTGCA--TTGTAACAGTGAGAGTG  1128

seq1  A  1150
      |
seq2  A  1129


seq1: chr4_51545591_51546041
seq2: B6Ng01-245A14.g_65_517 (reverse)

seq1  ATCTATATGTGGGCTCACCATATT--CTAATGGATAGTCCCAAGTCAATG  48
      ||| ||||| ||||||||||||||  | ||   | | || ||||||||||
seq2  ATCAATATGAGGGCTCACCATATTCCCAAAAAAAAAATCACAAGTCAATG  50

seq1  GTCACACAAATGGCCTAAATTAAACCATACACACACACACACACACACAC  98
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCACACAAATGACCTAAATTAAACCATACACACACACACACACACACAC  100

seq1  ACACACACACACACACACACACACACACACACACCTACAAATACACAAAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACCTACAAATACACAAAC  150

seq1  ACACACACACAAACAGGAGGAGAGGGGGAATGAGAACGAGGAGAGGGGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAACAGGAGGAGAGGGGGAATGAGAACGAGGAGAGGGGGA  200

seq1  ATGAGAACGGTAGGAAGGGAGTTTGGAGGGTCTTGTTGAAAGAGGTAGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACGGTAGGAAGGGAGTTTGGAGGGTCTTGTTGAAAGAGGTAGGA  250

seq1  GGAAAATAAAAGGGAGTTGAGGGAAGAACCAGAATGCATCATAACAATGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAAAAGGGAGTTGAGGGAAGAACCAGAATGCATCATAACAATGT  300

seq1  ATAAATGTATCAAAAATTAACATAAGAAGAATTTTTCATGGGAGTTGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTATCAAAAATTAACATAAGAAGAATTTTTCATGGGAGTTGAAA  350

seq1  GAGATCGTCTTATTGATTTTGAATGCAAGTGCCTACTGGTGCACTCAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCGTCTTATTGATTTTGAATGCAAGTGCCTACTGGTGCACTCAAAG  400

seq1  TTTTCTACAACACTGACACAGCTGTAGAAAGTTTAGTTCATTTTAATGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACAACACTGACACAGCTGTAGAAAGTTTAGTTCATTTTAATGAA  450

seq1  TTC  451
      |||
seq2  TTC  453


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