BAC Information

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BAC

Clone NameB6Ng01-246E16
Chromosome4 (Build37)
Map Location 101,984,720 - 102,151,286
singlet/doubletdoublet
Overlap genePde4b
Upstream geneE130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739
Downstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246E16.bB6Ng01-246E16.g
ACCGA054943GA054944
length1,0881,054
definitionB6Ng01-246E16.b B6Ng01-246E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,984,720 - 101,985,818)(102,150,278 - 102,151,286)
sequence
gaattcaaccttatctaaatgaagaagggaagcttgggcagggtggagca
caaatcccaacttcccttgtctttgaacttgacagtggccagagttactg
ggtattgtagaatttatcactgtgtggcagcactgttcacgaagcatgga
gaagtggttgtgtcagggccattttttagaaggtgagttctgcctcgatt
ctcaataagaataaaggaagttctacttcctttctgttttgtttgctggt
acatatgtgtgctatacacatgccttgctcccaaagagatcaaacagggc
ctcagatcctctagaaccggagttttgaatgtttgtgaaccactatgtgg
atactgggcactgaacccaagttctctgcaaaagtaaaaagtgttcttaa
atacagagccatctctccagctctaaaataaatctttaaaaagagcatat
taaaacgtactagtttggggctggagaggtggctcagcaattaagagcac
tggctgatcttccaaaagacccaggttcaaatctcagcacccatatagtt
tcctgttgaataggctgtagacagacagaaagacaaaccacatgaaagat
agatataggtggagagagttgggtcatagttttctacctttttacccgat
ttaagttctttttttttttcttcttttcttacaaggcttagctgaaaagc
actatgatattgtgtggaactggtgcaaactagtattacctcctatcatc
tgagtcttactattttccccaagctgatacatgaacagaaagcatgacct
gggtcttagcaaaaagggagagtgtggcaatagcctttgctgcttatgag
cctctgcctcagagagaagttcctaattagctccagtttgagacaggcac
acaaagtgcattcatttccctcaaatgggtctttatatgtacagaagctg
aggcagagtgctttttttttttttttgtctagttttgcaaatgttaatat
ttggcatttttattagttatgttaatattctatgcctgacctatagaaga
gggatcatttgtccaggttccaaatctaacactataaa
gaattcagcctcaggctgctttgattgaggagcaggccaaaccctagttc
aggaaaagtgttaagtaacgattccttgatgaatgcataaactctggctt
ctaaccctgattaacctcttgttcattgtgtgactgtttttcttattctc
tagctttggagtaagttacctactagacagtttctttttcaaactactat
ttaaacagctcccctttcccccacaacatctctcgtagctctgtgccatt
taattaattaatttttttcaaaattgctttccattcttatcaactctaag
gcaatctgttgcacttgccaatggcttaactagcagtgcctggcacttga
ctggaacacagcactaattcttagcagctgcctgttctgtggattaatga
ataactgaagaccagtgatgctcctggcgactcccaaacgccaagcttac
tagcttcttggactttcattcatctgggggaggagctgtcttagccattt
cctaactaagtgagctgccacacaatttctaaagcaattcaaatctaaaa
caaaagttgacctttccttcagtctctgctccattttttatccctgtgtt
tcctttagacaggaacaattctgggttaaagattttaagaaaggtaaatg
gccctatctctcaactgggggccatgtctatctactggaggtggtctctt
cagagactgtcccaccttggcatccatcccatctgcagattccaaacccc
aacactgttgctgatgccaggaagtgcttgtagacaggagcctggtgtag
ctgtcctctgagaggctctgctagcacctaagactgatgcgatactcaca
gccaaccattagactgaggccagggacccccaatggaagaattaggggga
agggcagaaacagctgaaggggattgcaactccataggaagaacaacaat
atcaactaggcagacctcttcagagctctcaggactaaaccaccaatcca
aggagttatacatgagtcatccatggccctcacttatgtattacagcaga
gaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_101984720_101985818
seq2: B6Ng01-246E16.b_45_1132

seq1  GAATTCAACCTTATCTAAATGAAGAAGGGAAGCTTGGGCAGGGTGGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTATCTAAATGAAGAAGGGAAGCTTGGGCAGGGTGGAGCA  50

seq1  CAAATCCCAACTTCCCTTGTCTTTGAACTTGACAGTGGCCAGAGTTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAACTTCCCTTGTCTTTGAACTTGACAGTGGCCAGAGTTACTG  100

seq1  GGTATTGTAGAATTTATCACTGTGTGGCAGCACTGTTCACGAAGCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGTAGAATTTATCACTGTGTGGCAGCACTGTTCACGAAGCATGGA  150

seq1  GAAGTGGTTGTGTCAGGGCCATTTTTTAGAAGGTGAGTTCTGCCTCGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTTGTGTCAGGGCCATTTTTTAGAAGGTGAGTTCTGCCTCGATT  200

seq1  CTCAATAAGAATAAAGGAAGTTCTACTTCCTTTCTGTTTTGTTTGCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAAGAATAAAGGAAGTTCTACTTCCTTTCTGTTTTGTTTGCTGGT  250

seq1  ACATATGTGTGCTATACACATGCCTTGCTCCCAAAGAGATCAAACAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGTGCTATACACATGCCTTGCTCCCAAAGAGATCAAACAGGGC  300

seq1  CTCAGATCCTCTAGAACCGGAGTTTTGAATGTTTGTGAACCACTATGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATCCTCTAGAACCGGAGTTTTGAATGTTTGTGAACCACTATGTGG  350

seq1  ATACTGGGCACTGAACCCAAGTTCTCTGCAAAAGTAAAAAGTGTTCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGCACTGAACCCAAGTTCTCTGCAAAAGTAAAAAGTGTTCTTAA  400

seq1  ATACAGAGCCATCTCTCCAGCTCTAAAATAAATCTTTAAAAAGAGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGCCATCTCTCCAGCTCTAAAATAAATCTTTAAAAAGAGCATAT  450

seq1  TAAAACGTACTAGTTTGGGGCTGGAGAGGTGGCTCAGCAATTAAGAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACGTACTAGTTTGGGGCTGGAGAGGTGGCTCAGCAATTAAGAGCAC  500

seq1  TGGCTGATCTTCCAAAAGACCCAGGTTCAAATCTCAGCACCCATATAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATCTTCCAAAAGACCCAGGTTCAAATCTCAGCACCCATATAGTT  550

seq1  TCCTGTTGAATAGGCTGTAGACAGACAGAAAGACAAACCACATGAAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGAATAGGCTGTAGACAGACAGAAAGACAAACCACATGAAAGAT  600

seq1  AGATATAGGTGGAGAGAGTTGGGTCATAGTTTTCTACCTTTTTACCCGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGGTGGAGAGAGTTGGGTCATAGTTTTCTACCTTTTTACCCGAT  650

seq1  TTAAGTTCTTTTTTTTTTTCTTCTTTTCTTACAAGGCTTAGCTGAAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTCTTTTTTTTTTTCTTCTTTTCTTACAAGGCTTAGCTGAAAAGC  700

seq1  ACTATGATATTGTGTGGAACTGGTGCAAACTAGTATTACCTCCTATCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATATTGTGTGGAACTGGTGCAAACTAGTATTACCTCCTATCATC  750

seq1  TGAGTCTTACTATTTTCCCCAAGCTGATACATGAACAGAAAGCATGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTACTATTTTCCCCAAGCTGATACATGAACAGAAAGCATGACCT  800

seq1  GGGTCTTAGCAAAAAGGGAGAGTGTGGCAATAGCCTTTGCTGCTTATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTAGCAAAAAGGGAGAGTGTGGCAATAGCCTTTGCTGCTTATGAG  850

seq1  CCTCTGCCTCAGAGAGAAGTTCCTAATTAGCTCCAGTTTGAGACAGGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCAGAGAGAAGTTCCTAATTAGCTCCAGTTTGAGACAGGCAC  900

seq1  ACAAGGTGCATTCATTTCCC-CAAATGGGTCTTTATATGTACAGAAGCTG  949
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAAAGTGCATTCATTTCCCTCAAATGGGTCTTTATATGTACAGAAGCTG  950

seq1  AGGCAGGAGGTTGCTTTTTTTTTTTTTTTGTCTAGTTTTGCAAAATGTTA  999
      ||||| |||  |||||||||||||||||||||||||||||| ||||||| 
seq2  AGGCA-GAG--TGCTTTTTTTTTTTTTTTGTCTAGTTTTGC-AAATGTT-  995

seq1  AATATTTGGGCATTTTTATTTGGTAATTGTTAATATTCTATGCCCTGACC  1049
      ||||||| |||||||||||| | ||  ||||||||||||||| |||||||
seq2  AATATTT-GGCATTTTTATTAGTTA--TGTTAATATTCTATG-CCTGACC  1041

seq1  CATAGAAGAGGGATCATTTTGTCCAAGTTCACAAATCTAAACACTATAAA  1099
       ||||||||||||||| |||||||| |||| ||||||| |||||||||||
seq2  TATAGAAGAGGGATCA-TTTGTCCAGGTTC-CAAATCT-AACACTATAAA  1088

seq1: chr4_102150278_102151286
seq2: B6Ng01-246E16.g_108_1123 (reverse)

seq1  GTTCTCTGCTGT-ATACAT-AGTG-GGGCCATGGATGACTCATGTAT-AC  46
      |||||||||||| |||||| |||| |||||||||||||||||||||| ||
seq2  GTTCTCTGCTGTAATACATAAGTGAGGGCCATGGATGACTCATGTATAAC  50

seq1  TCCTTGG-TTGGTGGTTTAGTCCCTGGGAGCTCTGAAG-GGTCTGCCTAG  94
      ||||||| ||||||||||||| |||| ||||||||||| |||||||||||
seq2  TCCTTGGATTGGTGGTTTAGT-CCTGAGAGCTCTGAAGAGGTCTGCCTAG  99

seq1  TTGATATTGTTGTTCTTCCTATGGAGTTGCAATCCCCTTCAGCTGTTTCT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTGTTGTTCTTCCTATGGAGTTGCAATCCCCTTCAGCTGTTTCT  149

seq1  GCCCTT-CCCCTAATTCTTCCATT-GGGGTCCCTGGCCTCAGTCTAATGG  192
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  GCCCTTCCCCCTAATTCTTCCATTGGGGGTCCCTGGCCTCAGTCTAATGG  199

seq1  TTGGCTGTGAGTATCGCATCAGTCTTAGGTGCTAGCAGAGCCTCTCAGAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTGAGTATCGCATCAGTCTTAGGTGCTAGCAGAGCCTCTCAGAG  249

seq1  GACAGCTACACCAGGCTCCTGTCTACAAGCACTTCCTGGCATCAGCAACA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTACACCAGGCTCCTGTCTACAAGCACTTCCTGGCATCAGCAACA  299

seq1  GTGTTGGGGTTTGGAATCTGCAGATGGGATGGATGCCAAGGTGGGACAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGGTTTGGAATCTGCAGATGGGATGGATGCCAAGGTGGGACAGT  349

seq1  CTCTGAAGAGACCACCTCCAGTAGATAGACATGGCCCCCAGTTGAGAGAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGAGACCACCTCCAGTAGATAGACATGGCCCCCAGTTGAGAGAT  399

seq1  AGGGCCATTTACCTTTCTTAAAATCTTTAACCCAGAATTGTTCCTGTCTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATTTACCTTTCTTAAAATCTTTAACCCAGAATTGTTCCTGTCTA  449

seq1  AAGGAAACACAGGGATAAAAAATGGAGCAGAGACTGAAGGAAAGGTCAAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACACAGGGATAAAAAATGGAGCAGAGACTGAAGGAAAGGTCAAC  499

seq1  TTTTGTTTTAGATTTGAATTGCTTTAGAAATTGTGTGGCAGCTCACTTAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTAGATTTGAATTGCTTTAGAAATTGTGTGGCAGCTCACTTAG  549

seq1  TTAGGAAATGGCTAAGACAGCTCCTCCCCCAGATGAATGAAAGTCCAAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATGGCTAAGACAGCTCCTCCCCCAGATGAATGAAAGTCCAAGA  599

seq1  AGCTAGTAAGCTTGGCGTTTGGGAGTCGCCAGGAGCATCACTGGTCTTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTAAGCTTGGCGTTTGGGAGTCGCCAGGAGCATCACTGGTCTTCA  649

seq1  GTTATTCATTAATCCACAGAACAGGCAGCTGCTAAGAATTAGTGCTGTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCATTAATCCACAGAACAGGCAGCTGCTAAGAATTAGTGCTGTGT  699

seq1  TCCAGTCAAGTGCCAGGCACTGCTAGTTAAGCCATTGGCAAGTGCAACAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAAGTGCCAGGCACTGCTAGTTAAGCCATTGGCAAGTGCAACAG  749

seq1  ATTGCCTTAGAGTTGATAAGAATGGAAAGCAATTTTGAAAAAAATTAATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTAGAGTTGATAAGAATGGAAAGCAATTTTGAAAAAAATTAATT  799

seq1  AATTAAATGGCACAGAGCTACGAGAGATGTTGTGGGGGAAAGGGGAGCTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGGCACAGAGCTACGAGAGATGTTGTGGGGGAAAGGGGAGCTG  849

seq1  TTTAAATAGTAGTTTGAAAAAGAAACTGTCTAGTAGGTAACTTACTCCAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGTAGTTTGAAAAAGAAACTGTCTAGTAGGTAACTTACTCCAA  899

seq1  AGCTAGAGAATAAGAAAAACAGTCACACAATGAACAAGAGGTTAATCAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGAATAAGAAAAACAGTCACACAATGAACAAGAGGTTAATCAGG  949

seq1  GTTAGAAGCCAGAGTTTATGCATTCATCAAGGAATCGTTACTTAACACTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGCCAGAGTTTATGCATTCATCAAGGAATCGTTACTTAACACTT  999

seq1  TTCCTGAACTAGGGTTT  1009
      |||||||||||||||||
seq2  TTCCTGAACTAGGGTTT  1016