BAC Information

Click to search

BAC

Clone NameB6Ng01-246G17
Chromosome4 (Build37)
Map Location 93,775,741 - 93,913,377
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246G17.bB6Ng01-246G17.g
ACCGA055038GA055039
length1,190589
definitionB6Ng01-246G17.b B6Ng01-246G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,775,741 - 93,776,933)(93,912,790 - 93,913,377)
sequence
gaattcactcagagcagcaggttttcagcttctatgacatgagatgatca
atgaccacattagccactaatctaaggcataaaacatgcatgaggcatta
gcatggaaatctaacacgttcctcaccccaggtggtactagatttcgaat
ctgttgtcccatctaataggaataaacttaaatagcttatttagaggttc
atttacaaagttaataattagagtgatttactcaataggcaggggaggaa
gaagagagacagatgggtggcgattaaaatgagaaaaacagtaaaagtca
cctcacaaaagccaaacttaacttctggtatgatgtttttgtttatagtt
atagtcttttgagagagaatcaggttaaggggagaaaatgaaaatgagag
aggggagaaaatgggcctttagaaattaggtattaattagaggtcaaaaa
aatcaacactgttttagaacacactgtacaatgagttcaatttcccaaac
ttttttttacctctttaacattggaatgatagaagctgctccacatggat
ttaaatgaggaaaccaaagaggaaggtatctaattattagtgtttccatt
ccttagtggattcaccaggaagtgccgagatgtaaatatgcactcttcct
ccaaaatctacatggcagcaattgaactggtcacaaatttcaacggtgtt
tcatttgcccttacacccagagggaaagcaatcaaatgagttatataatt
tagtataaggtgctatagcaaacaaatgatggcctgctaattatcagtca
acaaatacggagtctgtcaatcttctctccaatgactttatggttctcta
tcctattcatgacaactggttcaaagtttactcttaaatttaaaatgttt
gggacaacagcccaaagggatggccctttaatatattttcaactataagt
ggctaatatttttcttgtttgttttaaatatttatttattttatgtatat
tagtacaattatagctgtctcagacacatcagaagagggcgttcagatct
catttacagatggttatgagccaccattgtcttgcaagatttgactcaga
cctcaggaacagcagtcatgcttcttaccctcttgatcattctggcatcc
gcccgattttttttaaatttaaccttgtacccctctaatc
gaattcagccagaaggtagttaaaacaaaggtttacttaggaaagtaaag
gaaaacttcagatataaggagtgggccaacccagtgtgggtacttcattg
ttggattattcattgtgatttttttgtttgtttgtttattttgagacagt
ttcattatgttgccctgattggcaggaacttgccatgtagaccatgctga
acttgaacaatggttctttgacttttgcctctggcttttcatgcttatag
acattgcctccatgccaagctctagtagtgtgcatttaaggagtttgata
gggtccctgctagcttatgatgtcattattaggttcctcaacttgcagtt
atgttttatacccacttttgcttatgtgccagtctgccaactttattatt
tcttaacatgagtacataagtgaaactccagtggaggtgtgcaaaaacca
ccctgctaatgaaaggacaataatgctttaatgaccaggacatatttcct
tcttactttttcatgatacaggacaggaaagaccctgacatttcctttcc
tttccctttcctttcctttcctttcctttcctttccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93775741_93776933
seq2: B6Ng01-246G17.b_44_1233

seq1  GAATTCACTCAGAGCAGCAGGTTTTCAGCTTCTATGACATGAGATGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGAGCAGCAGGTTTTCAGCTTCTATGACATGAGATGATCA  50

seq1  ATGACCACATTAGCCACTAATCTAAGGCATAAAACATGCATGAGGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCACATTAGCCACTAATCTAAGGCATAAAACATGCATGAGGCATTA  100

seq1  GCATGGAAATCTAACACGTTCCTCACCCCAGGTGGTACTAGATTTCGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAAATCTAACACGTTCCTCACCCCAGGTGGTACTAGATTTCGAAT  150

seq1  CTGTTGTCCCATCTAATAGGAATAAACTTAAATAGCTTATTTAGAGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCCCATCTAATAGGAATAAACTTAAATAGCTTATTTAGAGGTTC  200

seq1  ATTTACAAAGTTAATAATTAGAGTGATTTACTCAATAGGCAGGGGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAAGTTAATAATTAGAGTGATTTACTCAATAGGCAGGGGAGGAA  250

seq1  GAAGAGAGACAGATGGGTGGCGATTAAAATGAGAAAAACAGTAAAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGACAGATGGGTGGCGATTAAAATGAGAAAAACAGTAAAAGTCA  300

seq1  CCTCACAAAAGCCAAACTTAACTTCTGGTATGATGTTTTTGTTTATAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAAAAGCCAAACTTAACTTCTGGTATGATGTTTTTGTTTATAGTT  350

seq1  ATAGTCTTTTGAGAGAGAATCAGGTTAAGGGGAGAAAATGAAAATGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTTTGAGAGAGAATCAGGTTAAGGGGAGAAAATGAAAATGAGAG  400

seq1  AGGGGAGAAAATGGGCCTTTAGAAATTAGGTATTAATTAGAGGTCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAAAATGGGCCTTTAGAAATTAGGTATTAATTAGAGGTCAAAAA  450

seq1  AATCAACACTGTTTTAGAACACACTGTACAATGAGTTCAATTTCCCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACACTGTTTTAGAACACACTGTACAATGAGTTCAATTTCCCAAAC  500

seq1  TTTTTTTTACCTCTTTAACATTGGAATGATAGAAGCTGCTCCACATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTACCTCTTTAACATTGGAATGATAGAAGCTGCTCCACATGGAT  550

seq1  TTAAATGAGGAAACCAAAGAGGAAGGTATCTAATTATTAGTGTTTCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGGAAACCAAAGAGGAAGGTATCTAATTATTAGTGTTTCCATT  600

seq1  CCTTAGTGGATTCACCAGGAAGTGCCGAGATGTAAATATGCACTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGGATTCACCAGGAAGTGCCGAGATGTAAATATGCACTCTTCCT  650

seq1  CCAAAATCTACATGGCAGCAATTGAACTGGTCACAAATTTCAACGGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCTACATGGCAGCAATTGAACTGGTCACAAATTTCAACGGTGTT  700

seq1  TCATTTGCCCTTACACCCAGAGGGAAAGCAATCAAATGAGTTATATAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCCCTTACACCCAGAGGGAAAGCAATCAAATGAGTTATATAATT  750

seq1  TAGTATAAGGTGCTATAGCAAACAAATGATGGCCTGCTAATTATCAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAGGTGCTATAGCAAACAAATGATGGCCTGCTAATTATCAGTCA  800

seq1  ACAAATACGGAGTCTGTCAATCTTCTCTCCAATGAC-TTATGGTTCTCTA  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAAATACGGAGTCTGTCAATCTTCTCTCCAATGACTTTATGGTTCTCTA  850

seq1  TCCTATTCATGACAACTGGTTCAAAGTTTACCCTTAAATTTAAAATGTTT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTATTCATGACAACTGGTTCAAAGTTTACTCTTAAATTTAAAATGTTT  900

seq1  GGGACAACAGCCCAAAGGGATGGCCCTTTAATAATATTTTCAACTATAAG  949
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  GGGACAACAGCCCAAAGGGATGGCCCTTTAAT-ATATTTTCAACTATAA-  948

seq1  GTGGCTAAATATTTTTCTTGTTTGTTTTAAATATTTATTTATTTTATGTA  999
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCT-AATATTTTTCTTGTTTGTTTTAAATATTTATTTATTTTATGTA  997

seq1  TATTAGTACAATTATAGCTGTCTTCAGACACACCAGAAGAGGGCG-TCAG  1048
      |||||||||||||||||||||| ||||||||| |||||||||||| ||||
seq2  TATTAGTACAATTATAGCTGTC-TCAGACACATCAGAAGAGGGCGTTCAG  1046

seq1  AACCCA-TTACAGATGGTTATGAGCCACCATGTGGTTGCAGGGAATTGAA  1097
      | | || ||||||||||||||||||||||||    ||||| |  |||  |
seq2  ATCTCATTTACAGATGGTTATGAGCCACCATTGTCTTGCAAG--ATTTGA  1094

seq1  CTCAGGACCTCAGGAACAGCAGTCAGTGC-TCTTAACCTCTGAGCCATCT  1146
      |||| |||||||||||||||||||| ||| ||||| |||||    ||| |
seq2  CTCA-GACCTCAGGAACAGCAGTCA-TGCTTCTTACCCTCTTGATCAT-T  1141

seq1  CTCCACCCCCCCCCTTTTTTTTTAAATTTAA-CTTGTACCTC-CTAATC  1193
      ||     || |||  |||||||||||||||| |||||||| | ||||||
seq2  CTGGCATCCGCCCGATTTTTTTTAAATTTAACCTTGTACCCCTCTAATC  1190

seq1: chr4_93912790_93913377
seq2: B6Ng01-246G17.g_70_658 (reverse)

seq1  AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA-GGAAAGGAAAGGAAAA  49
      || |||||||||||||||||||||||||||||| |||||||||||| |||
seq2  AATGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGGAAAGGAAAGG-AAA  49

seq1  TGTCAGGGTCTTTCCTGTCCTGTATCATG-AAAAGTAAGAAGGAAATATG  98
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTCAGGGTCTTTCCTGTCCTGTATCATGAAAAAGTAAGAAGGAAATATG  99

seq1  TCCTGGTCATTAAAGCATTATTGTCCTTTCATTAGCAGGGTGGTTTTTGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCATTAAAGCATTATTGTCCTTTCATTAGCAGGGTGGTTTTTGC  149

seq1  ACACCTCCACTGGAGTTTCACTTATGTACTCATGTTAAGAAATAATAAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCACTGGAGTTTCACTTATGTACTCATGTTAAGAAATAATAAAG  199

seq1  TTGGCAGACTGGCACATAAGCAAAAGTGGGTATAAAACATAACTGCAAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGACTGGCACATAAGCAAAAGTGGGTATAAAACATAACTGCAAGT  249

seq1  TGAGGAACCTAATAATGACATCATAAGCTAGCAGGGACCCTATCAAACTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACCTAATAATGACATCATAAGCTAGCAGGGACCCTATCAAACTC  299

seq1  CTTAAATGCACACTACTAGAGCTTGGCATGGAGGCAATGTCTATAAGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGCACACTACTAGAGCTTGGCATGGAGGCAATGTCTATAAGCAT  349

seq1  GAAAAGCCAGAGGCAAAAGTCAAAGAACCATTGTTCAAGTTCAGCATGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCAGAGGCAAAAGTCAAAGAACCATTGTTCAAGTTCAGCATGGT  399

seq1  CTACATGGCAAGTTCCTGCCAATCAGGGCAACATAATGAAACTGTCTCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGCAAGTTCCTGCCAATCAGGGCAACATAATGAAACTGTCTCAA  449

seq1  AATAAACAAACAAACAAAAAAATCACAATGAATAATCCAACAATGAAGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAACAAACAAAAAAATCACAATGAATAATCCAACAATGAAGTA  499

seq1  CCCACACTGGGTTGGCCCACTCCTTATATCTGAAGTTTTCCTTTACTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTGGGTTGGCCCACTCCTTATATCTGAAGTTTTCCTTTACTTTC  549

seq1  CTAAGTAAACCTTTGTTTTAACTACCTTCTGGCTGAATTC  588
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAAACCTTTGTTTTAACTACCTTCTGGCTGAATTC  589