BAC Information

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BAC

Clone NameB6Ng01-246G22
Chromosome4 (Build37)
Map Location 38,217,381 - 38,418,487
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC277771, LOC100039448
Downstream geneLOC665520, LOC100039487, 1700009N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246G22.bB6Ng01-246G22.g
ACCGA055048GA055049
length1,119417
definitionB6Ng01-246G22.b B6Ng01-246G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,417,374 - 38,418,487)(38,217,381 - 38,217,803)
sequence
gaattccatttagaggaacccttgtggttttcttcaatccttgtattcgc
tgtccaggtaattcagtagttataaacacctaagtaagaagttctgtctt
ttttgcctcattttagtggttgtaattcttatttttctttatgaaacatc
tgactcctgaagtcactagtaatttccctagcaatcactattttcctcct
gtgaagaactatcttccctctgtctagataacatttccacagaaacttaa
tcatgtcagtttcttcttcaaaagtttgtaagacctattttttgcattag
aacacctattcttttgtcattgcatatttagaattagaaaactcaaatgc
caaatataacttagatgtaaactgatcagattgatctgccttatttataa
agaagagttatccactttcctttgccaatgaacgctgtcctcgtgttccc
ttctactctgcatttatgatacctcaccatcaaatatgccaactcaactt
tcgtaagtttatttgcaacagcctaaggaacattcttttcagagtgaatt
cttctcacctgtgttattaccattatgtatataattgtctcttttcataa
atcatgacctccatgagaataatatgtgaaatgtttgtttgtatcttcac
aatttttgattctacatatcctataaattaatgatgaatatttaaagtca
ggaatatgaaagttatgctttatgatatatgaaagaatatgattagctta
tatttgacatacagggaatgatagatgattcattgagattattaaatttt
gaatacactttaaaaaagaaaaatgacaatttcatttttattattattat
tttctctctccactcttctctgccctccccatccccatccattcctttgt
tcctcttcagaaaagggcaggcttcccatggatataaacccaaacatcgc
atatcaagttgcagtaagagtaggtactttcacttctttgaaggctgctc
aaggcatcctaatatgagggaaatgggtctcaaaagtcatttagagagtc
agagatagccccattctcctcactgttaggagtctcataagaccacgcta
tacaactgtaacattatat

catgtagtctaaagtcacttgttcttcctacattgtccttggcaaataca
tttaccaggagcggaaaaaacccacaagctgggtagatttcagcaattca
aataagtgttttaaaacatttctggagtcattgatgtccaagatcaagat
ttagcacctgtgtgtgctccttttcatcatagatatgttttctgagataa
catcctttgtgttatgagctaacatggtgaaaggggcattcaagctccat
tgaatatctttgtaaggttaacaatctcatccatctatgaggatagttta
gtcatggtccaatggacaaaactttgaaagctataacaatattttgtgtg
cagaaatctctctctctctctctctctctctctctctctctctctctctc
tctctctttctcttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38417374_38418487
seq2: B6Ng01-246G22.b_46_1164 (reverse)

seq1  ATAT-ATGTTACAGTTGTATAGCGTGGTCTTATGAGACTCCTAACAGTG-  48
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATAATGTTACAGTTGTATAGCGTGGTCTTATGAGACTCCTAACAGTGA  50

seq1  GGAGAA-GGGGCTATCTCTGACTCTCTTAATGGCTTTTGAGACCCATTT-  96
      |||||| |||||||||||||||||||| |||| |||||||||||||||| 
seq2  GGAGAATGGGGCTATCTCTGACTCTCTAAATGACTTTTGAGACCCATTTC  100

seq1  CCTCATATTAGGATGCCTTGAGCAGCCTTCAAAGAAGTGGAAGTACCTAC  146
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTCATATTAGGATGCCTTGAGCAGCCTTCAAAGAAGTGAAAGTACCTAC  150

seq1  TCTTACTGCAACTTGATATGCGATGTTT-GGTTTATATCCATGGGAAGCC  195
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTTACTGCAACTTGATATGCGATGTTTGGGTTTATATCCATGGGAAGCC  200

seq1  TGCCCTTTTCTGAAGAGGAACAAAGGAATGGATGGGGATGGGGAGGGCAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTTCTGAAGAGGAACAAAGGAATGGATGGGGATGGGGAGGGCAG  250

seq1  AGAAGAGTGGAGAGAGAAAATAATAATAATAAAAATGAAATTGTCATTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTGGAGAGAGAAAATAATAATAATAAAAATGAAATTGTCATTTT  300

seq1  TCTTTTTTAAAGTGTATTCAAAATTTAATAATCTCAATGAATCATCTATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAAGTGTATTCAAAATTTAATAATCTCAATGAATCATCTATC  350

seq1  ATTCCCTGTATGTCAAATATAAGCTAATCATATTCTTTCATATATCATAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGTATGTCAAATATAAGCTAATCATATTCTTTCATATATCATAA  400

seq1  AGCATAACTTTCATATTCCTGACTTTAAATATTCATCATTAATTTATAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACTTTCATATTCCTGACTTTAAATATTCATCATTAATTTATAGG  450

seq1  ATATGTAGAATCAAAAATTGTGAAGATACAAACAAACATTTCACATATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGAATCAAAAATTGTGAAGATACAAACAAACATTTCACATATTA  500

seq1  TTCTCATGGAGGTCATGATTTATGAAAAGAGACAATTATATACATAATGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGGAGGTCATGATTTATGAAAAGAGACAATTATATACATAATGG  550

seq1  TAATAACACAGGTGAGAAGAATTCACTCTGAAAAGAATGTTCCTTAGGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACACAGGTGAGAAGAATTCACTCTGAAAAGAATGTTCCTTAGGCT  600

seq1  GTTGCAAATAAACTTACGAAAGTTGAGTTGGCATATTTGATGGTGAGGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAATAAACTTACGAAAGTTGAGTTGGCATATTTGATGGTGAGGTA  650

seq1  TCATAAATGCAGAGTAGAAGGGAACACGAGGACAGCGTTCATTGGCAAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATGCAGAGTAGAAGGGAACACGAGGACAGCGTTCATTGGCAAAG  700

seq1  GAAAGTGGATAACTCTTCTTTATAAATAAGGCAGATCAATCTGATCAGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGATAACTCTTCTTTATAAATAAGGCAGATCAATCTGATCAGTT  750

seq1  TACATCTAAGTTATATTTGGCATTTGAGTTTTCTAATTCTAAATATGCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTAAGTTATATTTGGCATTTGAGTTTTCTAATTCTAAATATGCAA  800

seq1  TGACAAAAGAATAGGTGTTCTAATGCAAAAAATAGGTCTTACAAACTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAGAATAGGTGTTCTAATGCAAAAAATAGGTCTTACAAACTTTT  850

seq1  GAAGAAGAAACTGACATGATTAAGTTTCTGTGGAAATGTTATCTAGACAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAACTGACATGATTAAGTTTCTGTGGAAATGTTATCTAGACAG  900

seq1  AGGGAAGATAGTTCTTCACAGGAGGAAAATAGTGATTGCTAGGGAAATTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGATAGTTCTTCACAGGAGGAAAATAGTGATTGCTAGGGAAATTA  950

seq1  CTAGTGACTTCAGGAGTCAGATGTTTCATAAAGAAAAATAAGAATTACAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGACTTCAGGAGTCAGATGTTTCATAAAGAAAAATAAGAATTACAA  1000

seq1  CCACTAAAATGAGGCAAAAAAGACAGAACTTCTTACTTAGGTGTTTATAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAAATGAGGCAAAAAAGACAGAACTTCTTACTTAGGTGTTTATAA  1050

seq1  CTACTGAATTACCTGGACAGCGAATACAAGGATTGAAGAAAACCACAAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAATTACCTGGACAGCGAATACAAGGATTGAAGAAAACCACAAGG  1100

seq1  GTTCCTCTAAATGGAATTC  1114
      |||||||||||||||||||
seq2  GTTCCTCTAAATGGAATTC  1119


seq1: chr4_38217381_38217803
seq2: B6Ng01-246G22.g_66_488

seq1  GAATTCCATGTAGTCTAAAGTCACTTGTTCTTCCTACATTGTCCTTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTAGTCTAAAGTCACTTGTTCTTCCTACATTGTCCTTGGCA  50

seq1  AATACATTTACCAGGAGCGGAAAAAACCCACAAGCTGGGTAGATTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTTACCAGGAGCGGAAAAAACCCACAAGCTGGGTAGATTTCAGC  100

seq1  AATTCAAATAAGTGTTTTAAAACATTTCTGGAGTCATTGATGTCCAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATAAGTGTTTTAAAACATTTCTGGAGTCATTGATGTCCAAGAT  150

seq1  CAAGATTTAGCACCTGTGTGTGCTCCTTTTCATCATAGATATGTTTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTAGCACCTGTGTGTGCTCCTTTTCATCATAGATATGTTTTCTG  200

seq1  AGATAACATCCTTTGTGTTATGAGCTAACATGGTGAAAGGGGCATTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACATCCTTTGTGTTATGAGCTAACATGGTGAAAGGGGCATTCAAG  250

seq1  CTCCATTGAATATCTTTGTAAGGTTAACAATCTCATCCATCTATGAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGAATATCTTTGTAAGGTTAACAATCTCATCCATCTATGAGGAT  300

seq1  AGTTTAGTCATGGTCCAATGGACAAAACTTTGAAAGCTATAACAATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGTCATGGTCCAATGGACAAAACTTTGAAAGCTATAACAATATTT  350

seq1  TGTGTGCAGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCAGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTCTCTCTTTCTCTTGTG  423
      |||||||||||||||||||||||
seq2  TCTCTCTCTCTCTTTCTCTTGTG  423


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