BAC Information

Click to search

BAC

Clone NameB6Ng01-246O13
Chromosome4 (Build37)
Map Location 130,721,399 - 130,887,610
singlet/doubletdoublet
Overlap genenone
Upstream geneCol16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
Downstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246O13.bB6Ng01-246O13.g
ACCGA055393GA055394
length763494
definitionB6Ng01-246O13.b B6Ng01-246O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,886,853 - 130,887,610)(130,721,399 - 130,721,898)
sequence
gaattcctttacttggttaaagccagtttgggcttggtctctaccatttt
taaccccaaggatcccaacaaacatgctttacactcatctgcgtgttgtc
aggcccagatgagataactaaatagacaggttttaaatggctcctgaaca
ttggctttctctctttgtgtgagtcagcttcttgcctggagcagggaggg
cttattttggtgctgggttttggagggctcagcccataatttgttgatgc
tggaatgtcactgctctgggcctgtggcttagcagggcatcatggtgaca
agaggccatggtcatggttgagtagcatcaagccttcagcagagtctttg
gggacggggcaagccccaacactactgtggttaccttttgctgtctcatc
tgttcctggcccatgacacttactatttttgcttgttttttgttttgttt
tctgagacagcatttctcagtgttatcttggcttccctggactctgtaga
ccaggctgtcctcgaactcagaatcattatactcttagcacacgtgtctc
ctcctttccagggattctctctaattgcccttcttgtcaccgtctagtca
gtgttcagtgcctgctactcatcttgggggccatgcttattcagtggtga
tttagtcattgtctgtctgtctatcctgaccctgagtgccaagaaggcag
gagctatgaagatggtgtgcccttctgtgccctgacatactggaggcatt
tgcatcagtcagc
cctgcttctcattcaccagtcaccacttacttcacacacatatgtggatg
tgtttatctgtcactgttgatacacactgtccagtatgcccagagacttg
ctcctgggtcaccttgcttgccaggacttcacctcacgctcttagtgtat
ctcaggcccctgaatcatcccctccccagagcatcaggcaggtctcgctt
cttcgggtccttccatgggcctctcttagccttggttctgtctgtctatc
ctgaagacatcacttcaggttacttcgggaataacttctgggcatggtta
agcctaggcacctgccactgtggatgtctgcagcctggttcttctgggga
aagtttgggacccagaacacaacactcagaggaacggtgagagaagggtt
agggaaacgggtgtttgcaccacaattcctagtggccactaatagaaagt
cactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_130886853_130887610
seq2: B6Ng01-246O13.b_38_800 (reverse)

seq1  GCTGACTGATGCAAATGCCTCCAGTATGTCA-GGCACAG-AGGGCACACC  48
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GCTGACTGATGCAAATGCCTCCAGTATGTCAGGGCACAGAAGGGCACACC  50

seq1  ATCTTCATAGCTCCTGCCTTCTTGGCACTCAGGGTCAGGATAGACAGACA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATAGCTCCTGCCTTCTTGGCACTCAGGGTCAGGATAGACAGACA  100

seq1  GACAATGACTAAATCACCACTGAATAAGCATGGCCCCCAAGATGAGTAGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGACTAAATCACCACTGAATAAGCATGGCCCCCAAGATGAGTAGC  150

seq1  AGGCACTGAACACTGACTAGACGGTGACAAGAAGGGCAATTAGAGAGAAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGAACACTGACTAGACGGTGACAAGAAGGGCAATTAGAGAGAAT  200

seq1  CCCTGG-AAGGAGGAGACACGTGTGCTAAGAGTATAATGATTCTGAGTTC  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAAAGGAGGAGACACGTGTGCTAAGAGTATAATGATTCTGAGTTC  250

seq1  GAGGACAGCCTGGTCTACAGAGTCCAGGGAAGCCAAGATAACACTGAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGCCTGGTCTACAGAGTCCAGGGAAGCCAAGATAACACTGAGAA  300

seq1  ATGCTGTCTCAGAAAACAAAACAAAAAACAAGCAAAAATAGTAAGTGTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTCAGAAAACAAAACAAAAAACAAGCAAAAATAGTAAGTGTCA  350

seq1  TGGGCCAGGAACAGATGAGACAGCAAAAGGTAACCACAGTAGTGTTGGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGGAACAGATGAGACAGCAAAAGGTAACCACAGTAGTGTTGGGG  400

seq1  CTTGCCCCGTCCCCAAAGACTCTGCTGAAGGCTTGCTGCTACTCAACCAT  447
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTGCCCCGTCCCCAAAGACTCTGCTGAAGGCTTGATGCTACTCAACCAT  450

seq1  GACCATGGCCTCTTGTCACCATGATGCCCTGCTAAGCCACAGGCCCAGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGCCTCTTGTCACCATGATGCCCTGCTAAGCCACAGGCCCAGAG  500

seq1  CAGTGACATTCCAGCATCAACAAATTATGGGCTGAGCCCTCCAAAACCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACATTCCAGCATCAACAAATTATGGGCTGAGCCCTCCAAAACCCA  550

seq1  GCACCAAAATAAGCCCTCCCTGCTCCAGGCAAGAAGCTGACTCACACAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAAATAAGCCCTCCCTGCTCCAGGCAAGAAGCTGACTCACACAAA  600

seq1  GAGAGAAAGCCAATGTTCAGGAGCCATTTAAAACCTGTCTATTTAGTTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGCCAATGTTCAGGAGCCATTTAAAACCTGTCTATTTAGTTAT  650

seq1  CTCATCTGGGCCTGACAACACGCAGATGAGTGTAAAGCATGTTTGTTGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGGGCCTGACAACACGCAGATGAGTGTAAAGCATGTTTGTTGGG  700

seq1  ATCCTTGGGGTTAAAAATGGTAGAGACCAAGCCCAAACTGGCTTT-ACCA  746
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCCTTGGGGTTAAAAATGGTAGAGACCAAGCCCAAACTGGCTTTAACCA  750

seq1  AGT-AAGGAATTC  758
      ||| |||||||||
seq2  AGTAAAGGAATTC  763

seq1: chr4_130721399_130721898
seq2: B6Ng01-246O13.g_72_571

seq1  GAATTCCCTGCTTCTCATTCACCAGTCACCACTTACTTCACACACATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCTTCTCATTCACCAGTCACCACTTACTTCACACACATATG  50

seq1  TGGATGTGTTTATCTGTCACTGTTGATACACACTGTCCAGTATGCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGTTTATCTGTCACTGTTGATACACACTGTCCAGTATGCCCAGA  100

seq1  GACTTGCTCCTGGGTCACCTTGCTTGCCAGGACTTCACCTCACGCTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTCCTGGGTCACCTTGCTTGCCAGGACTTCACCTCACGCTCTTA  150

seq1  GTGTATCTCAGGCCCCTGAATCATCCCCTCCCCAGAGCATCAGGCAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTCAGGCCCCTGAATCATCCCCTCCCCAGAGCATCAGGCAGGTC  200

seq1  TCGCTTCTTCGGGTCCTTCCATGGGCCTCTCTTAGCCTTGGTTCTGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTCTTCGGGTCCTTCCATGGGCCTCTCTTAGCCTTGGTTCTGTCTG  250

seq1  TCTATCCTGAAGACATCACTTCAGGTTACTTCGGGAATAACTTCTGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTGAAGACATCACTTCAGGTTACTTCGGGAATAACTTCTGGGCA  300

seq1  TGGTTAAGCCTAGGCACCTGCCACTGTGGATGTCTGCAGCCTGGTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGCCTAGGCACCTGCCACTGTGGATGTCTGCAGCCTGGTTCTTC  350

seq1  TGGGGAAAGTTTGGGACCCAGAACACAACACTCAGAGGAACGGTGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAGTTTGGGACCCAGAACACAACACTCAGAGGAACGGTGAGAGA  400

seq1  AGGGTTAGGGAAACGGGTGTTTGCACCACAATTCCTAGTGGCCACTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAGGGAAACGGGTGTTTGCACCACAATTCCTAGTGGCCACTAATA  450

seq1  GAAAGTCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCT  500