BAC Information

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BAC

Clone NameB6Ng01-247A11
Chromosome4 (Build37)
Map Location 132,800,658 - 132,915,777
singlet/doubletdoublet
Overlap geneMap3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1
Upstream geneGmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps
Downstream geneSlc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247A11.bB6Ng01-247A11.g
ACCGA055477GA055478
length1,1621,101
definitionB6Ng01-247A11.b B6Ng01-247A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,914,622 - 132,915,777)(132,800,658 - 132,801,751)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctggaaaaacc
aaccaacagcaacaaaaagaaggaaccagtggattaaatagtgacaaaag
aaggacaggtaacccttgcccctagggaacagagggaagaatgttgagta
ttcccgggagggaatcagagagagtttagcatcaggcatgatacagtgtg
tattaccagcacttaagggactaccagttccctcacacacacacacacac
acaaaattaaaaaaaaaaaaaagaaaagaaaagaaaagaaaaaaacaaaa
aaagaagggagagagagagagagaaatcttttttttagtcagtatcaaaa
gaagtcaggaagaataagaataagtagaaaatttttgttttcctgagttt
agattcagatgagtgggcagattgaacacagctatgtggcagcttcagac
acaataaccagaaaagaatttaaaattaaaagtctgaggacaaaatgaac
ctctagacaaagacaactctgttcacagggggctcagcttcttcccagta
aggtgcagtcccattgtcctcctgtcaaaggatggatactgagcaggctt
tacaccaggtctgctctgctggaactgtcagcaggcactgaggctccacg
gacaggtgagttagtgctccttgctctcccatacacttgtttgagcaacc
tctccctggaccaaatacatcagtcacatggtgggatcacacagggttgt
gggtctaatgctttgtacagaatacaccggcttgcttcttttcaaagaca
aaacagggctggagaaaaggctcagtggctaagagtatttgttactattc
cagatgacctgagttcaattcccattacacacatcagcagctgcctttcg
gcctcttcaggtactcacacgcacttaaacgcacacatatacacatgatt
agaaaacaaaacaaggggctggagagatggctcagtggttaggagcactg
actgctcttcttgaaggtcctgaattcaatcccagcaaccacatggtggc
tcacaccaccctttaatgagaatccgaatgacctctttcggtgcaattag
acagcctacaggtgactacatataaataatttaaattaatccttcagaaa
aagaattcatct
gaattccaggacacccagggctatgtagagaaacctcatctcaaaaaaca
agcagaaaaatgatttctgctggcagtgatggtgcgggtctttagtccca
gcactcgggaggcagtagcaggtggatctgtgagcttgaggccagcctgg
tctacagagagagttccagggcagccagggctaccgatctttccttgctg
tcaagggctcatcgagatgctgcacgctgtctcccacaggactactcggc
catcattgagctggtggagacgctgcaggctttgcccacctgtgatgtgg
ctgaacagcacaatgtctgctttcactacacatttgccctcaacaggtgg
gtagtggggcacggcttgagtcagagtcttggaagtctctgtgacctgcc
gagcaagagcactgcagtctggaaccactgctcctcgggtatcttgctaa
cctgggtcctaatgtcacaaggttcctgttggtctgggctaaggatgcat
ggtggggacagaggaggtgggatccccttgatagggtcatagctgtccaa
ggtcgctactccttagagttgtttgcaactagaaatcccttccatctgga
gtcactaactctagagatcaatgcttcccggggttagtgtcatttgaggc
tcattaatagtaagcccccagaagggtcccttccgtttatggtctattgc
gtcccaggactgggtgggtcagagccatcagacaggtcttcagtgcatgt
tcctccgccttaggaggaacaggcctggggaccgggagaaagccctggct
gtcctgctgccattggtgaagtatgaaggtcccgtggctccggatctgta
ctgcatgtgtggtcgtatctacaaggacatgttcttcacttctggctttc
caaaatgccggccacctggagcaggcctatcactgggtaattcacataag
agtaaagagagggcttagcgatgggactgaagggtgggggttgcgggcat
ccattcagcctgggcatccccttgccgacccggactcaggtacggcaagg
cgttttgaatgttggagcccagcttgcactcaggcatcaatgcagctgtt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132914622_132915777
seq2: B6Ng01-247A11.b_49_1210 (reverse)

seq1  AGATG-ATTTTTTTTCTTAAAGATTTATT--AATTA-TTATATGTAAGTT  46
      ||||| ||| ||||||| || |||| |||  ||||| |||||||| ||| 
seq2  AGATGAATTCTTTTTCTGAAGGATTAATTTAAATTATTTATATGT-AGTC  49

seq1  CACTGTA-GCTGTCTTAATGCACCGGAAGAGGTCA-TCGGA-TCTCATT-  92
        ||||| ||||||| | ||||||| ||||||||| ||||| ||||||| 
seq2  ACCTGTAGGCTGTCTAATTGCACCGAAAGAGGTCATTCGGATTCTCATTA  99

seq1  AAGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTCAGGACC  142
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  AAGGGTGG-TGTGAGCCACCATGTGGTTGCTGGGA-TTGAATTCAGGACC  147

seq1  TTC-AGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCC  191
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCAAGAAGAGCAGTCAGTGCTCCTAACCACTGAGCCATCTCTCCAGCCC  197

seq1  CTTGTTTTGTTTTCTAATCATGTGTATATGTGTGCGTTTAAGTGCGTGTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTGTTTTCTAATCATGTGTATATGTGTGCGTTTAAGTGCGTGTG  247

seq1  AGTACCTGAAGAGGCCG-AAGGCAGCTGCCTGATGTGTGTAATGGGAATT  290
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  AGTACCTGAAGAGGCCGAAAGGCAGCTG-CTGATGTGTGTAATGGGAATT  296

seq1  GAACTCAGGTCATCTGGAATAGTAACAAATACTCTTAGCCACTGAGCCTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGTCATCTGGAATAGTAACAAATACTCTTAGCCACTGAGCCTT  346

seq1  TTCTCCAGCCCTGTTTTGTCTTTGAAAAGAAGCAAGCCGGTGTATTCTGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGCCCTGTTTTGTCTTTGAAAAGAAGCAAGCCGGTGTATTCTGT  396

seq1  ACAAAGCATTAGACCCACAACCCTGTGTGATCCCACCATGTGACTGATGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCATTAGACCCACAACCCTGTGTGATCCCACCATGTGACTGATGT  446

seq1  ATTTGGTCCAGGGAGAGGTTGCTCAAACAAGTGTATGGGAGAGCAAGGAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCCAGGGAGAGGTTGCTCAAACAAGTGTATGGGAGAGCAAGGAG  496

seq1  CACTAACTCACCTGTCCGTGGAGCCTCAGTGCCTGCTGACAGTTCCAGCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACTCACCTGTCCGTGGAGCCTCAGTGCCTGCTGACAGTTCCAGCA  546

seq1  GAGCAGACCTGGTGTAAAGCCTGCTCAGTATCCATCCTTTGACAGGAGGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACCTGGTGTAAAGCCTGCTCAGTATCCATCCTTTGACAGGAGGA  596

seq1  CAATGGGACTGCACCTTACTGGGAAGAAGCTGAGCCCCCTGTGAACAGAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGACTGCACCTTACTGGGAAGAAGCTGAGCCCCCTGTGAACAGAG  646

seq1  TTGTCTTTGTCTAGAGGTTCATTTTGTCCTCAGACTTTTAATTTTAAATT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTGTCTAGAGGTTCATTTTGTCCTCAGACTTTTAATTTTAAATT  696

seq1  CTTTTCTGGTTATTGTGTCTGAAGCTGCCACATAGCTGTGTTCAATCTGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGTTATTGTGTCTGAAGCTGCCACATAGCTGTGTTCAATCTGC  746

seq1  CCACTCATCTGAATCTAAACTCAGGAAAACAAAAATTTTCTACTTATTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATCTGAATCTAAACTCAGGAAAACAAAAATTTTCTACTTATTCT  796

seq1  TATTCTTCCTGACTTCTTTTGATACTGACTAAAAAAAAGATTTCTCTCTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCCTGACTTCTTTTGATACTGACTAAAAAAAAGATTTCTCTCTC  846

seq1  TCTCTCTCCCTTCTTTTTTTGTTTTTTTCTTTTCTTTTCTTTTCTTTTTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTTCTTTTTTTGTTTTTTTCTTTTCTTTTCTTTTCTTTTTT  896

seq1  TTTTTTTTAATTTTGTGTGTGTGTGTGTGTGTGAGGGAACTGGTAGTCCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATTTTGTGTGTGTGTGTGTGTGTGAGGGAACTGGTAGTCCC  946

seq1  TTAAGTGCTGGTAATACACACTGTATCATGCCTGATGCTAAACTCTCTCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGCTGGTAATACACACTGTATCATGCCTGATGCTAAACTCTCTCT  996

seq1  GATTCCCTCCCGGGAATACTCAACATTCTTCCCTCTGTTCCCTAGGGGCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTCCCGGGAATACTCAACATTCTTCCCTCTGTTCCCTAGGGGCA  1046

seq1  AGGGTTACCTGTCCTTCTTTTGTCACTATTTAATCCACTGGTTCCTTCTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACCTGTCCTTCTTTTGTCACTATTTAATCCACTGGTTCCTTCTT  1096

seq1  TTTGTTGCTGTTGGTTGGTTTTTCCAGACAGGGTTTCTCTGTGTAGCCCT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTGTTGGTTGGTTTTTCCAGACAGGGTTTCTCTGTGTAGCCCT  1146

seq1  GGCTGTCCTGGAATTC  1156
      ||||||||||||||||
seq2  GGCTGTCCTGGAATTC  1162

seq1: chr4_132800658_132801751
seq2: B6Ng01-247A11.g_65_1165

seq1  GAATTCCAGGACACCCAGGGCTATGTAGAGAAACCTCATCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACACCCAGGGCTATGTAGAGAAACCTCATCTCAAAAAACA  50

seq1  AGCAGAAAAATGATTTCTGCTGGCAGTGATGGTGCGGGTCTTTAGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAAATGATTTCTGCTGGCAGTGATGGTGCGGGTCTTTAGTCCCA  100

seq1  GCACTCGGGAGGCAGTAGCAGGTGGATCTGTGAGCTTGAGGCCAGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGGGAGGCAGTAGCAGGTGGATCTGTGAGCTTGAGGCCAGCCTGG  150

seq1  TCTACAGAGAGAGTTCCAGGGCAGCCAGGGCTACCGATCTTTCCTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGAGAGTTCCAGGGCAGCCAGGGCTACCGATCTTTCCTTGCTG  200

seq1  TCAAGGGCTCATCGAGATGCTGCACGCTGTCTCCCACAGGACTACTCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGCTCATCGAGATGCTGCACGCTGTCTCCCACAGGACTACTCGGC  250

seq1  CATCATTGAGCTGGTGGAGACGCTGCAGGCTTTGCCCACCTGTGATGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGAGCTGGTGGAGACGCTGCAGGCTTTGCCCACCTGTGATGTGG  300

seq1  CTGAACAGCACAATGTCTGCTTTCACTACACATTTGCCCTCAACAGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGCACAATGTCTGCTTTCACTACACATTTGCCCTCAACAGGTGG  350

seq1  GTAGTGGGGCACGGCTTGAGTCAGAGTCTTGGAAGTCTCTGTGACCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGGGCACGGCTTGAGTCAGAGTCTTGGAAGTCTCTGTGACCTGCC  400

seq1  GAGCAAGAGCACTGCAGTCTGGAACCACTGCTCCTCGGGTATCTTGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAGCACTGCAGTCTGGAACCACTGCTCCTCGGGTATCTTGCTAA  450

seq1  CCTGGGTCCTAATGTCACAAGGTTCCTGTTGGTCTGGGCTAAGGATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCCTAATGTCACAAGGTTCCTGTTGGTCTGGGCTAAGGATGCAT  500

seq1  GGTGGGGACAGAGGAGGTGGGATCCCCTTGATAGGGTCATAGCTGTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGACAGAGGAGGTGGGATCCCCTTGATAGGGTCATAGCTGTCCAA  550

seq1  GGTCGCTACTCCTTAGAGTTGTTTGCAACTAGAAATCCCTTCCATCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCTACTCCTTAGAGTTGTTTGCAACTAGAAATCCCTTCCATCTGGA  600

seq1  GTCACTAACTCTAGAGATCAATGCTTCCCGGGGTTAGTGTCATTTGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAACTCTAGAGATCAATGCTTCCCGGGGTTAGTGTCATTTGAGGC  650

seq1  TCATTAATAGTAAGCCCCCAGAAGGGTCCCTTCCGTTTATGGTCTATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCATTAATAGTAAGCCCCCAGAAGGGTCCCTTCCGTTTATGGTCTATTGC  700

seq1  GTCCCAGGACTGGGTGGGTCAGAGCCATCAGACAGGTCTTCAGTGCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGACTGGGTGGGTCAGAGCCATCAGACAGGTCTTCAGTGCATGT  750

seq1  TCCTCCGCCTTAGGAGGAACAGGCCTGGGGACCGGGAGAAAGCCCTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGCCTTAGGAGGAACAGGCCTGGGGACCGGGAGAAAGCCCTGGCT  800

seq1  GTCCTGCTGCCATTGGTGAAGTATGAAGGTCCCGTGGCTCCGGATCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTGCCATTGGTGAAGTATGAAGGTCCCGTGGCTCCGGATCTGTA  850

seq1  CTGCATGTGTGGTCGTATCTACAAGGACATGTTCTTCACTTCTGGC-TTC  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGCATGTGTGGTCGTATCTACAAGGACATGTTCTTCACTTCTGGCTTTC  900

seq1  CAAAATGCCGGCCACCTGGAGCAGGCCTATCACT-GGTAATTCACATAAG  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAAATGCCGGCCACCTGGAGCAGGCCTATCACTGGGTAATTCACATAAG  950

seq1  AGTAAAGAGAGGGCTTAGCGATGGGACTGAAGGGT-GGGGTTGCGGGCAT  997
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTAAAGAGAGGGCTTAGCGATGGGACTGAAGGGTGGGGGTTGCGGGCAT  1000

seq1  CCATTCAGCCT-GGCATCCCCTGCCCGACCC-GACTCCAGGTACCGCAAG  1045
      ||||||||||| ||||||||||  ||||||| |||| ||||||| |||||
seq2  CCATTCAGCCTGGGCATCCCCTTGCCGACCCGGACT-CAGGTACGGCAAG  1049

seq1  GCGTTT--GATG-TGGAGCCCAGCCTGCACTCAGGCATCAATGCAGCTGT  1092
      ||||||   ||| ||||||||||| |||||||||||||||||||||||||
seq2  GCGTTTTGAATGTTGGAGCCCAGCTTGCACTCAGGCATCAATGCAGCTGT  1099

seq1  TC  1094
      ||
seq2  TC  1101