BAC Information

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BAC

Clone NameB6Ng01-247O21
Chromosome4 (Build37)
Map Location 154,866,077 - 155,012,330
singlet/doubletdoublet
Overlap geneGnb1, Nadk, A530082C11Rik, Cdc2l1
Upstream genePrdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52
Downstream geneMmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247O21.bB6Ng01-247O21.g
ACCGA056140GA056141
length1,1161,078
definitionB6Ng01-247O21.b B6Ng01-247O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,011,210 - 155,012,330)(154,866,077 - 154,867,149)
sequence
gaattctggtatcagttgagggtcaagttccggggagtcttgataactgg
gcaattctggtcaatttagctgttagcatagtagaagttatcccatctcc
agggctatcagttattctaggttccagagaagcttgcagacaaggactag
tccccgaacatcaaaaacctatgctctcaatgctatgtgcagttctagaa
gggacaaagtacccaagctgttgagactgcaccctactatggagagggtg
tcctttagagaaaacatgagggcatagggcacttatgtccacttctgttt
ttccttttcctcttttagaagctagatatttaaggacatggatattaaag
caattgtatgcacaggggaagctagaaaatgactgcaagtcccagggaaa
ggcagacttagatttgatgtgtaagaggatgtgccaagccaactgtgagt
acagataataccgacactcacaacacagtcacaccaagcactgaggaggg
gtctgatctcagagccatgacaaacatttaagttaaataacaaacaagat
ccagcatggtggcacatgcctttagtcccagcacatgaggcagaggcaga
gaggcagaggcaggcctatctctgtgacttggaggccacattgatgtaca
tagtgagttagtacttggacaggtagggttacatatagagactctgtctc
aaaacaaaacaaaaaacccaacaagaacaaagaataataaaacaaataaa
caacaagaaaaatgccacaaccagccaactgtgctgggtagttttatatc
aacttgacacaagctagtcatttgaggaatctcaattaagaaaattattc
cagggggctggagagatggtttagcgattaagagcaccaactgctcttcc
agacgtcctgagttcaattccagcaaccacatggtggctcacaaccatct
gtagtgggatccaatgccctcttctggtgtatctgagacagtgacagtgt
acttacataaaacaaataaatacatctaaaaaagaaagaaagaaagaaaa
aagacagaaattattccattaggcaagcctgtaggcattttctaatagga
ctcattcccattgtgg
gtttccagactcattcatgttcctggggtcgaggctgttgcggggggcgg
gggggtctagggcctgatgcgggatcccggaggtggtcttgagttttaag
aaagggaacgggatgcagggctggggctcgggtcgtaggttcgagcctgg
atggcttgctaaggtggggatgccaggagagccgcaggcgcttcttctcg
cggccgagtccccgcgggaacaaaagccgagctctgccctccggaccgcg
ccttcctgcggggcgtgggactcggccgggcgcgcggggagcggacacgg
ggcgagtctactggattcggccatcaacccctgccgggtgcgggcctacg
gctaccaagcttcccagcttccttcgctgccggccttcctggccccaggc
acccgtaaatgaatgggcgccgcgtccggtcgccgcgacaagatggcgat
acccgcctttgtcagccaggaccgcgccgtccgctgccggggctgaaaac
aaaggccggctctggtggccggtgcagaggaaaaggcgccgggctcctgg
gttcgcctgatgcatcagtgctgggaggggacgtcctgcccagagcactc
agagggtggcctagtctttccgcgtctcctccacagcctcgggttcccct
ggggaactgcagcttggcttttgaccttttgatacatttaaacatttttt
ttttccgggtttttttaaaccacaggattagcatcccgaaatagcatccc
tatacgtgttcagctcatctttaaagaggttatgtcaaaattttttattt
tgagaggagaattagtggggcttcatttaattaattaattgtttagtgca
ttgctgttttgcctggatgtgtctgtgtctgtgtgtgtatgtgaggtgtc
agatttccctggaactggagtcagagtcattagctgacttggtggggtgc
tgggaaacagaactcaagaacccttggaagatcagtcggatgctcttaaa
cccctgaccatcttctcagcccgaatagtagaaacttaataagtattata
aactgacacttgtgcatgatctgaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_155011210_155012330
seq2: B6Ng01-247O21.b_50_1165 (reverse)

seq1  CCACAAT-GGATTGAGTCCTAATTAAGAAAATGCCCTACAGGCTTG-CTT  48
      ||||||| ||| |||||||||  | |||||||| |||||||||||| || 
seq2  CCACAATGGGAATGAGTCCTA--TTAGAAAATG-CCTACAGGCTTGCCTA  47

seq1  ATGGAATAATTTTCTTGTCTTTTTTCTTTCTTTCTTTCTTTTTTAAGATG  98
      ||||||||||||   ||||||||||||||||||||||||||||| |||||
seq2  ATGGAATAATTT--CTGTCTTTTTTCTTTCTTTCTTTCTTTTTT-AGATG  94

seq1  TATTTATTTGTTTTATGTAAGTACACTGTCACTGTCTTCAGATACACCAG  148
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATTTATTTGTTTTATGTAAGTACACTGTCACTGTC-TCAGATACACCAG  143

seq1  AAGAGGGCATTGGATCCCACTACAGATGGTTGTGAGCCACCATGTGGTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCATTGGATCCCACTACAGATGGTTGTGAGCCACCATGTGGTTG  193

seq1  CTGGAATTGAACTCAGGACGTCTGGAAGAGCAGTTGGTGCTCTTAATCGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTGAACTCAGGACGTCTGGAAGAGCAGTTGGTGCTCTTAATCGC  243

seq1  TAAACCATCTCTCCAGCCCCCTGGAATAATTTTCTTAATTGAGATTCCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCTCTCCAGCCCCCTGGAATAATTTTCTTAATTGAGATTCCTC  293

seq1  AAATGACTAGCTTGTGTCAAGTTGATATAAAACTACCCAGCACAGTTGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTAGCTTGTGTCAAGTTGATATAAAACTACCCAGCACAGTTGGC  343

seq1  TGGTTGTGGCATTTTTCTTGTTGTTTATTTGTTTTATTATTCTTTGTTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGGCATTTTTCTTGTTGTTTATTTGTTTTATTATTCTTTGTTCT  393

seq1  TGTTGGGTTTTTTGTTTTGTTTTGAGACAGAGTCTCTATATGTAACCCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTTTTTTGTTTTGTTTTGAGACAGAGTCTCTATATGTAACCCTA  443

seq1  CCTGTCCAAGTACTAACTCACTATGTACATCAATGTGGCCTCCAAGTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCAAGTACTAACTCACTATGTACATCAATGTGGCCTCCAAGTCAC  493

seq1  AGAGATAGGCCTGCCTCTGCCTCTCTGCCTCTGCCTCATGTGCTGGGACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGGCCTGCCTCTGCCTCTCTGCCTCTGCCTCATGTGCTGGGACT  543

seq1  AAAGGCATGTGCCACCATGCTGGATCTTGTTTGTTATTTAACTTAAATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGTGCCACCATGCTGGATCTTGTTTGTTATTTAACTTAAATGT  593

seq1  TTGTCATGGCTCTGAGATCAGACCCCTCCTCAGTGCTTGGTGTGACTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGGCTCTGAGATCAGACCCCTCCTCAGTGCTTGGTGTGACTGTG  643

seq1  TTGTGAGTGTCGGTATTATCTGTACTCACAGTTGGCTTGGCACATCCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTGTCGGTATTATCTGTACTCACAGTTGGCTTGGCACATCCTCT  693

seq1  TACACATCAAATCTAAGTCTGCCTTTCCCTGGGACTTGCAGTCATTTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCAAATCTAAGTCTGCCTTTCCCTGGGACTTGCAGTCATTTTCT  743

seq1  AGCTTCCCCTGTGCATACAATTGCTTTAATATCCATGTCCTTAAATATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCCTGTGCATACAATTGCTTTAATATCCATGTCCTTAAATATCT  793

seq1  AGCTTCTAAAAGAGGAAAAGGAAAAACAGAAGTGGACATAAGTGCCCTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTAAAAGAGGAAAAGGAAAAACAGAAGTGGACATAAGTGCCCTAT  843

seq1  GCCCTCATGTTTTCTCTAAAGGACACCCTCTCCATAGTAGGGTGCAGTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCATGTTTTCTCTAAAGGACACCCTCTCCATAGTAGGGTGCAGTCT  893

seq1  CAACAGCTTGGGTACTTTGTCCCTTCTAGAACTGCACATAGCATTGAGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTTGGGTACTTTGTCCCTTCTAGAACTGCACATAGCATTGAGAG  943

seq1  CATAGGTTTTTGATGTTCGGGGACTAGTCCTTGTCTGCAAGCTTCTCTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTTTTTGATGTTCGGGGACTAGTCCTTGTCTGCAAGCTTCTCTGG  993

seq1  AACCTAGAATAACTGATAGCCCTGGAGATGGGATAACTTCTACTATGCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGAATAACTGATAGCCCTGGAGATGGGATAACTTCTACTATGCTA  1043

seq1  ACAGCTAAATTGACCAGAATTGCCCAGTTATCAAGACTCCCCGGAACTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAAATTGACCAGAATTGCCCAGTTATCAAGACTCCCCGGAACTTG  1093

seq1  ACCCTCAACTGATACCAGAATTC  1121
      |||||||||||||||||||||||
seq2  ACCCTCAACTGATACCAGAATTC  1116

seq1: chr4_154866077_154867149
seq2: B6Ng01-247O21.g_77_1154

seq1  GTTTCCAGACTCATTCATGTTCCTGGGGTCGAGGCTGTTGCGGGGGGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGACTCATTCATGTTCCTGGGGTCGAGGCTGTTGCGGGGGGCGG  50

seq1  GGGGGTCTAGGGCCTGATGCGGGATCCCGGAGGTGGTCTTGAGTTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCTAGGGCCTGATGCGGGATCCCGGAGGTGGTCTTGAGTTTTAAG  100

seq1  AAAGGGAACGGGATGCAGGGCTGGGGCTCGGGTCGTAGGTTCGAGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAACGGGATGCAGGGCTGGGGCTCGGGTCGTAGGTTCGAGCCTGG  150

seq1  ATGGCTTGCTAAGGTGGGGATGCCAGGAGAGCCGCAGGCGCTTCTTCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGCTAAGGTGGGGATGCCAGGAGAGCCGCAGGCGCTTCTTCTCG  200

seq1  CGGCCGAGTCCCCGCGGGAACAAAAGCCGAGCTCTGCCCTCCGGACCGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGTCCCCGCGGGAACAAAAGCCGAGCTCTGCCCTCCGGACCGCG  250

seq1  CCTTCCTGCGGGGCGTGGGACTCGGCCGGGCGCGCGGGGAGCGGACACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGCGGGGCGTGGGACTCGGCCGGGCGCGCGGGGAGCGGACACGG  300

seq1  GGCGAGTCTACTGGATTCGGCCATCAACCCCTGCCGGGTGCGGGCCTACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTCTACTGGATTCGGCCATCAACCCCTGCCGGGTGCGGGCCTACG  350

seq1  GCTACCAAGCTTCCCAGCTTCCTTCGCTGCCGGCCTTCCTGGCCCCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAAGCTTCCCAGCTTCCTTCGCTGCCGGCCTTCCTGGCCCCAGGC  400

seq1  ACCCGTAAATGAATGGGCGCCGCGTCCGGTCGCCGCGACAAGATGGCGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTAAATGAATGGGCGCCGCGTCCGGTCGCCGCGACAAGATGGCGAT  450

seq1  ACCCGCCTTTGTCAGCCAGGACCGCGCCGTCCGCTGCCGGGGCTGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCCTTTGTCAGCCAGGACCGCGCCGTCCGCTGCCGGGGCTGAAAAC  500

seq1  AAAGGCCGGCTCTGGTGGCCGGTGCAGAGGAAAAGGCGCCGGGCTCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCGGCTCTGGTGGCCGGTGCAGAGGAAAAGGCGCCGGGCTCCTGG  550

seq1  GTTCGCCTGATGCATCAGTGCTGGGAGGGGACGTCCTGCCCAGAGCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCCTGATGCATCAGTGCTGGGAGGGGACGTCCTGCCCAGAGCACTC  600

seq1  AGAGGGTGGCCTAGTCTTTCCGCGTCTCCTCCACAGCCTCGGGTTCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGGCCTAGTCTTTCCGCGTCTCCTCCACAGCCTCGGGTTCCCCT  650

seq1  GGGGAACTGCAGCTTGGCTTTTGACCTTTTGATACATTTAAACATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACTGCAGCTTGGCTTTTGACCTTTTGATACATTTAAACATTTTTT  700

seq1  TTTTCCGGGTTTTTTTAAACCACAGGATTAGCATCCCGAAATAGCATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGGGTTTTTTTAAACCACAGGATTAGCATCCCGAAATAGCATCCC  750

seq1  TATACGTGTTCAGCTCATCTTTAAAGAGGTTATGTCAAAA-TTTTTATTT  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATACGTGTTCAGCTCATCTTTAAAGAGGTTATGTCAAAATTTTTTATTT  800

seq1  TGAGAGGAGAATTAGTGGGGCTTCATTTAATTAATTAATTGTTTAGTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAGAATTAGTGGGGCTTCATTTAATTAATTAATTGTTTAGTGCA  850

seq1  TTGCTGTTTTGCCTGGATGTGTCTGTGTCTGTGTGTGTATGTGAGGGTGT  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGCTGTTTTGCCTGGATGTGTCTGTGTCTGTGTGTGTATGTGA-GGTGT  899

seq1  CAGA-TTCCCTGGAACTGGAGTTAGAGTCATTAGCTGACTTG--TGGGTG  946
      |||| ||||||||||||||||| |||||||||||||||||||   |||||
seq2  CAGATTTCCCTGGAACTGGAGTCAGAGTCATTAGCTGACTTGGTGGGGTG  949

seq1  CTGGG-AACAGAACTCAAGACCCTTTGGAAGATCAG-CCGATGCTCTT-A  993
      ||||| |||||||||||||| || |||||||||||| | ||||||||| |
seq2  CTGGGAAACAGAACTCAAGAACCCTTGGAAGATCAGTCGGATGCTCTTAA  999

seq1  ACCCCTGAACCATCTCTCCAGCCCCGAATTAGTAGAA--TTTATAAGTA-  1040
      ||||||| |||||||   ||| |||||| ||||||||  || ||||||| 
seq2  ACCCCTG-ACCATCTTCTCAG-CCCGAA-TAGTAGAAACTTAATAAGTAT  1046

seq1  TATAAA-TGACACTTGTGCATGAATTTTGAAATT  1073
      |||||| ||||||||||||||||  | |||||||
seq2  TATAAACTGACACTTGTGCATGA--TCTGAAATT  1078