BAC Information

Click to search

BAC

Clone NameB6Ng01-247P20
Chromosome4 (Build37)
Map Location 27,257,611 - 27,258,668
singlet/doubletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247P20.bB6Ng01-247P20.g
ACCGA056179GA056180
length4941,162
definitionB6Ng01-247P20.b B6Ng01-247P20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttagctctgtaccccgttttttaatggggttatttgaatttctgg
agtttagcttcttgagctctttgtatatattggatattagtcccctatca
gatttaggattggagctaagacaaaaggatgggccaaccagagacttccc
caccaggggatccatcccataatcagccaccaaacacagacaccagcaag
attttgctgaagggaccctgatatagctgtctcctgtgaggctttgccag
tgcctggcaaatacagaagtggatactcacagtcatctataggatggaac
acagggcccccaatatcagagctagagaaagtactgaagagctgaagggg
tctgcaaccctataggtggaacaactatatgaactaatctgtacccccag
agctcatgtctctagctgcatatgtaacagaagatggcttagtcagccat
cattgggaagaaaggccccttggtctagcaaactttatatgccc

gaattcactctcgcacctgcgtacaaggcttgtttactagttaggcacag
cggaggcccgcaccatcttataatggcgattgctcgcagcacacacggct
ctcctcagagattactgtcggcacggacacaattgctcgcagcacgtacc
ggctttccacagggatcctctggtagtactatgtccaattttctgaggaa
ccaccagactgatttccagagtggttgtacaagcttgcaatcccatcaac
aatggaggagtgttcccctttctccacatcctcgccatcatctgctgtca
cctgagtttttgatctttaccattctgactggagtgaagtggaatctcag
tgttgttttgatttgcatttccctgatgattaaggatgttgaacattttt
tcaggtgcttctctgccattcggtattacttaggtgagaattctttgttc
agctctgagccccattttttaatggggttatttgatgttctggagtccac
cttcttgagttctttatatatattggatattagtcccctatccgatttgg
gataggtaaagatcctttcccaatctgttggtggcctttttgtcttattg
atggtgtctaataaaagtttttggattgcataaattgagctagcagagtg
taatagcagttcactttagaatttttttttgttttgcaagtgttgatcta
tctggaaatctctggggcacaaacatagctcttctataatttttttctag
gtaatctgacgtgggcatgattaatgatgttatggtgtgctttcaaacag
gagcctagcaaggctgttttttttagaggcacaagacgcagttgactgag
acaaacacagatacttatattcaaccattggattaaagccagtaaccatt
gtactcaaattaggcaaaagctagaagaagctaaggaggagggcaaccct
atttgaagactagcattctcaactaacctagacccccgaggtcttctcag
acactgaacacaaacagcagcataaaacagctagtctaagcccctgacag
agactgctggtcgcttcagtagaagaagaacttgctaatctcaaagaaga
ccttggaaccaatgaattcgagcattgattggggcatcttttttgagaaa
aggagggcaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27257611_27258668
seq2: B6Ng01-247P20.g_178_1229

seq1  ATTACTGTCGGCACGGACACAATTGCTCGCAGCACGTACCGGCTTTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTCGGCACGGACACAATTGCTCGCAGCACGTACCGGCTTTCCAC  50

seq1  AGGGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAACCACCAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAACCACCAGACT  100

seq1  GATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCATCAACAATGGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCATCAACAATGGAGGAG  150

seq1  TGTTCCCCTTTCTCCACATCCTCGCCATCATCTGCTGTCACCTGAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCTTTCTCCACATCCTCGCCATCATCTGCTGTCACCTGAGTTTT  200

seq1  TGATCTTTACCATTCTGACTGGAGTGAAGTGGAATCTCAGTGTTGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTACCATTCTGACTGGAGTGAAGTGGAATCTCAGTGTTGTTTTG  250

seq1  ATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTT  300

seq1  CTCTGCCATTCGGTATTACTTAGGTGAGAATTCTTTGTTCAGCTCTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATTCGGTATTACTTAGGTGAGAATTCTTTGTTCAGCTCTGAGC  350

seq1  CCCATTTTTTAATGGGGTTATTTGATGTTCTGGAGTCCACCTTCTTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTTAATGGGGTTATTTGATGTTCTGGAGTCCACCTTCTTGAGT  400

seq1  TCTTTATATATATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATATATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAA  450

seq1  GATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTA  500

seq1  ATAAAAGTTTTTGGATTGCATAAATTGAGCTAGCAGAGTGTAATAGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTTTTGGATTGCATAAATTGAGCTAGCAGAGTGTAATAGCAGT  550

seq1  TCACTTTAGAATTTTTTTTTGTTTTGCAAGTGTTGATCTATCTGGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAGAATTTTTTTTTGTTTTGCAAGTGTTGATCTATCTGGAAATC  600

seq1  TCTGGGGCACAAACATAGCTCTTCTATAATTTTTTTCTAGGTAATCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCACAAACATAGCTCTTCTATAATTTTTTTCTAGGTAATCTGAC  650

seq1  GTGGGCATGATTAATGATGTTATGGTGTGCTTTCAAACAGGAGCCTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATGATTAATGATGTTATGGTGTGCTTTCAAACAGGAGCCTAGCA  700

seq1  AGGCTG-TTTTTTTAGAGGCACAAGACGCAGTTGACTGAGACAAACACAG  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTTTTTTTAGAGGCACAAGACGCAGTTGACTGAGACAAACACAG  750

seq1  ATACTTATATTCAACCATTGGATTAAAGCCAGTAACCATTGTACTCAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATATTCAACCATTGGATTAAAGCCAGTAACCATTGTACTCAAAT  800

seq1  TAGGCAAAAGCTAGAAGAAGCTAAGGAGGAGGGCAACCCTATTTGAAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAAGCTAGAAGAAGCTAAGGAGGAGGGCAACCCTATTTGAAGAC  850

seq1  TAGCATTCTCAACTAACCTAGACCCCCGAGGTC-TCTCAGACACTGAAAC  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||  
seq2  TAGCATTCTCAACTAACCTAGACCCCCGAGGTCTTCTCAGACACTGAA--  898

seq1  AACAAACAGGCAGCATAAACAAGCTAGTCTAAGGCCCCTGACAGAGGACT  948
       ||||||| ||||||||||  ||||||||||| |||||||||||| ||||
seq2  CACAAACA-GCAGCATAAAACAGCTAGTCTAA-GCCCCTGACAGA-GACT  945

seq1  GCCTTGTCCGGCCTCAGTAAGAGAAG-ACTTGCCAAAACCTCAA--GAGA  995
      | || |||  || ||||||  ||||| ||||||   || |||||   |||
seq2  G-CTGGTC--GCTTCAGTAGAAGAAGAACTTGC--TAATCTCAAAGAAGA  990

seq1  -CTTGAAACCCAATTGAATAGGGAGGCATGGAAATGGGGCATCTTTTTAG  1044
       |||| ||||  | |||||  |   |||| | | |||||||||||||| |
seq2  CCTTGGAACC--AATGAATTCG--AGCATTG-ATTGGGGCATCTTTTTTG  1035

seq1  AGAAA--GAGGG-AACG  1058
      |||||  ||||| ||||
seq2  AGAAAAGGAGGGCAACG  1052


| Home | SequenceCutter | Blast | Download |