BAC Information

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BAC

Clone NameB6Ng01-248D15
Chromosome4 (Build37)
Map Location 11,574,389 - 11,771,164
singlet/doubletdoublet
Overlap geneLOC100039862, Gem, Cdh17
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik
Downstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248D15.bB6Ng01-248D15.g
ACCGA056356GA056357
length1,1221,065
definitionB6Ng01-248D15.b B6Ng01-248D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,574,389 - 11,575,471)(11,770,428 - 11,771,164)
sequence
gaattcatcatggtaagaatggccacttggggagtgagtcagccttctgg
tattttctggatcaatatcaatcctgagagcatggagagttgctttgaga
tggggtctcactgcatagtcctggctgaccacgaactcactatgtagacc
cggctggctttgaaatcacagaggcagaaatcaactgcttctgcctccag
agtgctgggattaaaggcatgcaccatcatgcctgcactgtttttgagtc
agtcatatgtagcccaggctagcctcaaactcactatgtagctgaggttg
actttgaattcccgaatctcctgcctctacctcccaagtgatgggaaagg
attttttttttttttttaaatcttggcactgaccccttgggtcacaagtc
taagaagctatttaattagtctcaacttgcccaaacagttaagactgagg
ctgacccattaatagcttgttttactaggacaggttactcagctaacaga
agggcatgcttctgagatgatgtgtgtgtctagacccagctgtgatgagc
ttctagtttgagtgttgggaagagttggccatgggagagggggctttgtg
agccatagctactgctctcccatggctagaagtgctgaatgaaaagctcc
aacagaggagtgggggaaactttaaagcatttggaatgctggagtttgca
cctactgtttggatattccaggcaagtgctaccattgaggcacactccca
gcctgaagctatttaccaatatatatttctactcagaagagggtcttgtg
taactaatagtttaggttttagggcagttcgaattggatgttcttaactt
gaggcccacctgccatgctttatacaccctcttctacatgttttgagcaa
gttagaagtctcaacaggatatttcatttaccaacagtcttccagggatg
cttgctccaggggtgagcaacgaagtaggatggtcagttaaagatcaacc
attgacgagatagggtgcttcagggtacccagccaggacctcgggtgaac
ctttttcatccctttagtggacaaacttgggttttctgttcattcatttg
gtggagcaagtgccttgtgtta
gaattcccccaatgtgctttaagccaggccttcaagctcactaatgcgcc
tccatctcggaagatggtagacctgagcatgctggccttgtgcagaataa
aatgctctttgcttctgcaaactatttgagtctagggtgtcattcttcgg
tgaatcatggacccttacacctgcactgtgcatgtgggggtccattctgt
ggggggtgtccacgatgttgctcacagcatgtgactttgtgcagcaaagc
tatttggaatctttcactgcaaaagaagatactgaaaattgtagaaaatg
cattctgttcttcccagcctcccatctttctcacaggcctcagattacat
tggaatatagaagaggggaaagcagggcagctcacagaagtctcaccgac
gacaggatggttttgaaggacctacaacgtgaggactccccaacgttctg
actcaggagaggcaacaccccaaatcactcacgagaaatggtcttgctgc
aaactgcaagaggacttttaaaataccaaaaataccagttaagagtcaca
aggaagtgcaaagtcacaagagtcacaaggaatacctggtaactatcact
gacaaattctgtcctaacatcagtccaagtccacagtcagagacaagggg
ttgacactgtctgtcctataacaaaaatcagaaaaaaaaaaaaaaaaaaa
cagaaacaaaacaaagacacaagacactagtacatctaaacacacgtgtc
cgtgcctggacttatacagccagccaaacgcaacttcctgatgggggtca
gattccacatctacctccttcctgacggggttcggatcccacacagaccc
ccttccacccgtggaacgtcttccagggtttgcagcctgcgggccttagg
acgtctccctccgcagctactggtcctcacaggccacagtggtggttgcc
agatactgttctcaaccactctcagtgcgccacacatagacacagacaac
atacacgacttcacacacgttactaaaggggtctccaagtttccttgggg
ttcacgcagatctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_11574389_11575471
seq2: B6Ng01-248D15.b_46_1167

seq1  GAATTCATCATGGTAAGAATGGCCACTTGGGGAGTGAGTCAGCCTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGGTAAGAATGGCCACTTGGGGAGTGAGTCAGCCTTCTGG  50

seq1  TATTTTCTGGATCAATATCAATCCTGAGAGCATGGAGAGTTGCTTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGGATCAATATCAATCCTGAGAGCATGGAGAGTTGCTTTGAGA  100

seq1  TGGGGTCTCACTGCATAGTCCTGGCTGACCACGAACTCACTATGTAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTCACTGCATAGTCCTGGCTGACCACGAACTCACTATGTAGACC  150

seq1  CGGCTGGCTTTGAAATCACAGAGGCAGAAATCAACTGCTTCTGCCTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGGCTTTGAAATCACAGAGGCAGAAATCAACTGCTTCTGCCTCCAG  200

seq1  AGTGCTGGGATTAAAGGCATGCACCATCATGCCTGCACTGTTTTTGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGCATGCACCATCATGCCTGCACTGTTTTTGAGTC  250

seq1  AGTCATATGTAGCCCAGGCTAGCCTCAAACTCACTATGTAGCTGAGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATGTAGCCCAGGCTAGCCTCAAACTCACTATGTAGCTGAGGTTG  300

seq1  ACTTTGAATTCCCGAATCTCCTGCCTCTACCTCCCAAGTGATGGGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAATTCCCGAATCTCCTGCCTCTACCTCCCAAGTGATGGGAAAGG  350

seq1  ATTTTTTTTTTTTTTTTAAATCTTGGCACTGACCCCTTGGGTCACAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTTTTTTTAAATCTTGGCACTGACCCCTTGGGTCACAAGTC  400

seq1  TAAGAAGCTATTTAATTAGTCTCAACTTGCCCAAACAGTTAAGACTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCTATTTAATTAGTCTCAACTTGCCCAAACAGTTAAGACTGAGG  450

seq1  CTGACCCATTAATAGCTTGTTTTACTAGGACAGGTTACTCAGCTAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCATTAATAGCTTGTTTTACTAGGACAGGTTACTCAGCTAACAGA  500

seq1  AGGGCATGCTTCTGAGATGATGTGTGTGTCTAGACCCAGCTGTGATGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATGCTTCTGAGATGATGTGTGTGTCTAGACCCAGCTGTGATGAGC  550

seq1  TTCTAGTTTGAGTGTTGGGAAGAGTTGGCCATGGGAGAGGGGGCTTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTTGAGTGTTGGGAAGAGTTGGCCATGGGAGAGGGGGCTTTGTG  600

seq1  AGCCATAGCTACTGCTCTCCCATGGCTAGAAGTGCTGAATGAAAAGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGCTACTGCTCTCCCATGGCTAGAAGTGCTGAATGAAAAGCTCC  650

seq1  AACAGAGGAGTGGGGGAAACTTTAAAGCATTTGGAATGCTGGAGTTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAGTGGGGGAAACTTTAAAGCATTTGGAATGCTGGAGTTTGCA  700

seq1  CCTACTGTTTGGATATTCCAGGCAAGTGCTACCATTGAGGCACACTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTTTGGATATTCCAGGCAAGTGCTACCATTGAGGCACACTCCCA  750

seq1  GCCTGAAGCTATTTACCAATATATA-TTCTACTCAGAAGAGGGTCTTGTG  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCTGAAGCTATTTACCAATATATATTTCTACTCAGAAGAGGGTCTTGTG  800

seq1  TAACTAATAGTTTAGGTTT--AGGCAGTTCGAATT-GATG-TCTTA--CT  843
      |||||||||||||||||||   ||||||||||||| |||| |||||   |
seq2  TAACTAATAGTTTAGGTTTTAGGGCAGTTCGAATTGGATGTTCTTAACTT  850

seq1  GAGG-CCACCTGCCATGCTTTA-ACA-CCTC-TCTACA--GTTTGAGCAA  887
      |||| ||||||||||||||||| ||| |||| ||||||   |||||||||
seq2  GAGGCCCACCTGCCATGCTTTATACACCCTCTTCTACATGTTTTGAGCAA  900

seq1  G-TAG-AGTC-CAACAGGATA-ATCA-TTACCAACAGTC-TCCA-GGATG  930
      | ||| |||| ||||||||||  ||| |||||||||||| |||| |||||
seq2  GTTAGAAGTCTCAACAGGATATTTCATTTACCAACAGTCTTCCAGGGATG  950

seq1  ATGGC-CCA-GGGTGAGCA--GGAGTA-GAAGGTCAG-TAAAGATCAACC  974
       | || ||| |||||||||  | |||| || |||||| ||||||||||||
seq2  CTTGCTCCAGGGGTGAGCAACGAAGTAGGATGGTCAGTTAAAGATCAACC  1000

seq1  A-TGACGAGA-AAGGTGCTTCA-GGTACCCAGCCA-GACC-CAGGTGAAC  1019
      | |||||||| | ||||||||| |||||||||||| |||| | |||||||
seq2  ATTGACGAGATAGGGTGCTTCAGGGTACCCAGCCAGGACCTCGGGTGAAC  1050

seq1  --TTTTCATCACCATAGTGGACAAACT---GGTTTCTGTTCATTCATT--  1062
        |||||||| |  |||||||||||||   | ||||||||||||||||  
seq2  CTTTTTCATCCCTTTAGTGGACAAACTTGGGTTTTCTGTTCATTCATTTG  1100

seq1  GTGGAGCAAGTG-CTTGTGTTA  1083
      |||||||||||| |||||||||
seq2  GTGGAGCAAGTGCCTTGTGTTA  1122

seq1: chr4_11770428_11771164
seq2: B6Ng01-248D15.g_396_1131 (reverse)

seq1  CGAGATCTGCGTG-ACACCCAGGAACCTTGAAGACCCCTTTTAGGTACGT  49
      ||||||||||||| || || ||||| |||| ||||||| |||||  ||| 
seq2  CGAGATCTGCGTGAACCCCAAGGAAACTTGGAGACCCC-TTTAGTAACG-  48

seq1  TGTGTG-AGTCGTGTATGTTGTCTGTTGTCTATGTGTGGCGCCACTGAGA  98
      |||||| |||||||||||||||||| ||||||||||||||| ||||||||
seq2  TGTGTGAAGTCGTGTATGTTGTCTG-TGTCTATGTGTGGCG-CACTGAGA  96

seq1  GTGTTTGAGAACAGTTATCTGGCAACCACCACTGTGGCCTGTGAGGACCC  148
      ||| |||||||||| |||||||||||||||||||||||||||||||| ||
seq2  GTGGTTGAGAACAG-TATCTGGCAACCACCACTGTGGCCTGTGAGGA-CC  144

seq1  AGTAGCTGCGGAGGGAGACGTCCTAAGGCCCGCAGGCTGC-AACCCTGGA  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTAGCTGCGGAGGGAGACGTCCTAAGGCCCGCAGGCTGCAAACCCTGGA  194

seq1  AGACGTTCCACGGGTGGAAGGGGGTCTGTGTGGGATCCGAACCCCGTCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTTCCACGGGTGGAAGGGGGTCTGTGTGGGATCCGAACCCCGTCAG  244

seq1  GAAGGAGGTAGATGTGGAATCTGACCCCCATCAGGAAGTTGCGTTTGGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGTAGATGTGGAATCTGACCCCCATCAGGAAGTTGCGTTTGGCT  294

seq1  GGCTGTATAAGTCCAGGCACGGACACGTGTGTTTAGATGTACTAGTGTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTATAAGTCCAGGCACGGACACGTGTGTTTAGATGTACTAGTGTCT  344

seq1  TGTGTCTTTGTTTTGTTTCTG--TTTTTTTTTTTTTTTTTCTGATTTTTG  395
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TGTGTCTTTGTTTTGTTTCTGTTTTTTTTTTTTTTTTTTTCTGATTTTTG  394

seq1  TTATAGGACAGACAGTGTCAACCCCTTGTCTCTGACTGTGGACTTGGACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGACAGACAGTGTCAACCCCTTGTCTCTGACTGTGGACTTGGACT  444

seq1  GATGTTAGGACAGAATTTGTCAGTGATAGTTACCAGGTATTCCTTGTGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGGACAGAATTTGTCAGTGATAGTTACCAGGTATTCCTTGTGAC  494

seq1  TCTTGTGACTTTGCACTTCCTTGTGACTCTTAACTGGTATTTTTGGTATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGACTTTGCACTTCCTTGTGACTCTTAACTGGTATTTTTGGTATT  544

seq1  TTAAAAGTCCTCTTGCAGTTTGCAGCAAGACCATTTCTCGTGAGTGATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTCCTCTTGCAGTTTGCAGCAAGACCATTTCTCGTGAGTGATTT  594

seq1  GGGGTGTTGCCTCTCCTGAGTCAGAACGTTGGGGAGTCCTCACGTTGTAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTTGCCTCTCCTGAGTCAGAACGTTGGGGAGTCCTCACGTTGTAG  644

seq1  GTCCTTCAAAACCATCCTGTCGTCGGTGAGACTTCTGTGAGCTGCCCTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAAAACCATCCTGTCGTCGGTGAGACTTCTGTGAGCTGCCCTGC  694

seq1  TTTCCCCTCTTCTATATTCCAATGTAATCTGAGGCCTGTGAG  737
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTCTTCTATATTCCAATGTAATCTGAGGCCTGTGAG  736