BAC Information

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BAC

Clone NameB6Ng01-248F11
Chromosome4 (Build37)
Map Location 50,562,519 - 50,563,656
singlet/doubletsinglet
Overlap genenone
Upstream gene2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248F11.bB6Ng01-248F11.g
ACCGA056444GA056445
length1,151970
definitionB6Ng01-248F11.b B6Ng01-248F11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaattatcagggaaatgcaaattaaaacaactctgagat
tccacctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgttggcaaggatgtggaaaaagagaaatactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattgggcatagtactactggaggatccagcaacacctctcctgggc
atatatccagaagatgtcccaaccagtaagatggacacatgctccactat
gttcatagcagccttattcataacagccagaagctggaaaacaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttatacaat
ggagtactactcatctattaaaaagaatgaatttatgaaattcctagccc
tcttactttctgataaatataattgtttccacattttttggacctaattc
ttctctgttagttcctttaaagaatcatttcaatccctctaacatatctc
ttacattcatttcattttcctttctgggaacatatgttactttggagaaa
ctatgaatttctagaaagtggctgagtaaaacgtgccatatttaacccca
aaaattagtaataaaataaaaatgaaatgtgttctcttttctccaaacac
tctttttcaattttgttaattgaatctactgaattaacaaactaaaaatt
ataatccagctaattcttacatgcacacacattttcactctatttgtgaa
aatagtattagatattttaacaaaagtatgtatatcaatcatttagctaa
atcttcctttgtctcttctttaattatataatatatttttctaaatggaa
attattacgttataatacataatgggtattatgtggtctttcaatttctt
ttaattttttttttcctgacacaataccttaaattttagaaaatattgtt
tttgtccattacccaatacatcaccagacaggtctttcactgattaaaat
gtataaatatagtttttctttacatgcctgacagggagctatgttgtact
g

gaattcagtcttgcagttcctcagaaaattgaacatagtactacttgaag
atccagcaatacctctcctgggcatatacccagaagatgttccaactggt
tataaggacacatgcttcactatgttcatagcagccctatttataatagc
cagaagctggaaagaacccagatgcccctcaacagaggaatggatacaga
aaatgtggtacatttacacaatggagtaatactcagctattaaaaacaat
gaatttatgaaattcttgggcaaatgaatgtatctggaggatatcatcct
gagtgaggtaaccaatcacaaaagaagtcacttgatatgcactcactgat
acgtggatattatcccagaaacttaaatacccaagatacaatttgcaaaa
cacaagaaaatcaagaagaaggaagaccaacatatggatactccattcct
ccttagaatagggagcaaagtacccatagaggagttacacagacaaagtt
tagagctaagacaaaaggatggaccatccagagactaccccacctgggga
tccatcccataatcagccacaaaatgcagacactattgcatacgccagca
agattttgctgaaaggatcgtgatatagctgtctcatttgaggctaggcc
agtgcctggcaaatgcagaagtggatgctcatagtcatctattggatgaa
acacagggcccccaatggaggagctagagaaagtacccaaggagctgaag
gggtctgcaaccctataggtggaacaatatgaagtaaccagtacccccag
agttcatgtctctagctgcatatgtagcagaagatggcctagtcggccat
cattggaaagagaggccccttggtcttgcaaactttatatgccctagtac
aggggaacgccagggccaagaagtaggagtgggtgggtagggggagcaga
gcaggtggagggggggaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_50562519_50563656
seq2: B6Ng01-248F11.b_50_1197 (reverse)

seq1  CAGTAAAAACATTAGCTCCCCTGTCAGCAATGTAAAGAAAAACTATA-TT  49
      |||| | |||| ||||| |||||||||  |||||||||||||||||| ||
seq2  CAGT-ACAACA-TAGCT-CCCTGTCAGGCATGTAAAGAAAAACTATATTT  47

seq1  ATACATTTTATTCAGTGAAGGA-CTGTCT-GTGATGTAT--GGTAATGGA  95
      |||||||||| |||||||| || |||||| |||||||||  |||||||||
seq2  ATACATTTTAATCAGTGAAAGACCTGTCTGGTGATGTATTGGGTAATGGA  97

seq1  CAAAAAC-ATATTTTCTAAAATTTAAGGGTATTGTGTCA--AGAAAAAAA  142
      ||||||| |||||||||||||||||| ||||||||||||  | |||||||
seq2  CAAAAACAATATTTTCTAAAATTTAA-GGTATTGTGTCAGGAAAAAAAAA  146

seq1  ATTAAA--GAATTGAAAGA-CACATAATAACCA-TATGTA-TATAACGTA  187
      ||||||   |||||||||| ||||||||| ||| |||||| |||||||||
seq2  ATTAAAAGAAATTGAAAGACCACATAATACCCATTATGTATTATAACGTA  196

seq1  ATAATTTCCATTTAG-AAAATATATTATATAATTAAAGAAGAGACAAAGG  236
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAATTTCCATTTAGAAAAATATATTATATAATTAAAGAAGAGACAAAGG  246

seq1  AAGATTTAGCTAAATGATTGATATACATACTTTTGTTAAAATATCTAATA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAGCTAAATGATTGATATACATACTTTTGTTAAAATATCTAATA  296

seq1  CTATTTTCACAAATAGAGTGAAAATGTGTGTGCATGTAAGAATTAGCTGG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCACAAATAGAGTGAAAATGTGTGTGCATGTAAGAATTAGCTGG  346

seq1  ATTATAATTTTTAGTTTGTTAATTCAGTAGATTCAATTAACAAAATTGAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTTTTAGTTTGTTAATTCAGTAGATTCAATTAACAAAATTGAA  396

seq1  AAAGAGTGTTTGGAGAAAAGAGAACACATTTCATTTTTATTTTATTACTA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGTTTGGAGAAAAGAGAACACATTTCATTTTTATTTTATTACTA  446

seq1  ATTTTTGGGGTTAAATATGGCACGTTTTACTCAGCCACTTTCTAGAAATT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGGGTTAAATATGGCACGTTTTACTCAGCCACTTTCTAGAAATT  496

seq1  CATAGTTTCTCCAAAGTAACATATGTTCCCAGAAAGGAAAATGAAATGAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTCTCCAAAGTAACATATGTTCCCAGAAAGGAAAATGAAATGAA  546

seq1  TGTAAGAGATATGTTAGAGGGATTGAAATGATTCTTTAAAGGAACTAACA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGATATGTTAGAGGGATTGAAATGATTCTTTAAAGGAACTAACA  596

seq1  GAGAAGAATTAGGTCCAAAAAATGTGGAAACAATTATATTTATCAGAAAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAATTAGGTCCAAAAAATGTGGAAACAATTATATTTATCAGAAAG  646

seq1  TAAGAGGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGATGAGTAGT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGATGAGTAGT  696

seq1  ACTCCATTGTATAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTGTATAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAG  746

seq1  GGGCATCTGGGTTGTTTTCCAGCTTCTGGCTGTTATGAATAAGGCTGCTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTGGGTTGTTTTCCAGCTTCTGGCTGTTATGAATAAGGCTGCTA  796

seq1  TGAACATAGTGGAGCATGTGTCCATCTTACTGGTTGGGACATCTTCTGGA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATAGTGGAGCATGTGTCCATCTTACTGGTTGGGACATCTTCTGGA  846

seq1  TATATGCCCAGGAGAGGTGTTGCTGGATCCTCCAGTAGTACTATGCCCAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCCAGGAGAGGTGTTGCTGGATCCTCCAGTAGTACTATGCCCAA  896

seq1  TTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGC  946

seq1  AATCCCACCAACAATGGAGGAGTATTTCTCTTTTTCCACATCCTTGCCAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACCAACAATGGAGGAGTATTTCTCTTTTTCCACATCCTTGCCAA  996

seq1  CATCTGCTGTCACCTGAATTTTTTATCTTAGCCATTCTGACTGGTGTGAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTGTCACCTGAATTTTTTATCTTAGCCATTCTGACTGGTGTGAG  1046

seq1  GTGGAATCTCAGAGTTGTTTTAATTTGCATTTCCCTGATAATTAAGGATG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATCTCAGAGTTGTTTTAATTTGCATTTCCCTGATAATTAAGGATG  1096

seq1  TTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAG  1146

seq1  AA  1138
      ||
seq2  AA  1148


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