BAC Information

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BAC

Clone NameB6Ng01-248H08
Chromosome4 (Build37)
Map Location 146,705,235 - 146,706,003
singlet/doubletsinglet
Overlap geneLOC666581
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248H08.bB6Ng01-248H08.g
ACCGA056534GA056535
length1,161769
definitionB6Ng01-248H08.b B6Ng01-248H08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaaagcctcttttactctttctatcaatagctggtcaatttcat
tatcaccttgtgccagagggcctggcaaacctgtatgggatcttatgtgt
gttatatatagtggatcactcctgtttcttatcttttgttgtagctgaag
aaatagtgaagtcaattcagattcatcctgaatacgattaacagtctgta
ttggaaaaacaaccctttctgcatattgaaagtcagttactatattaaga
gactcttgagaatctgacaacactgtgagtattgtacataattcagatct
ttgaactgatttatagggacattcagcgacctacatcttctgatttatat
cctgcctttcctgatttattagtctcagcataacatgtaggggctccaga
taatggaatttcctttattttatgagggaaaatccacatagttcttttta
tgaaatgaaatcatttgttttcatggtatctgttattaatctctccaaaa
agttactgcatgttctttaccaagattcactcacgttgtgcccctaagga
ggcaatctctgcattagtagaaggtaccactattttaggtggatccattc
caactacttgtcaatgtctcactttttccttttaatatcaattcagagac
cttctccatgtaggtttttcttactgtgtttatgtgctaaaaaatccatt
cttttattatattcatatatttgtttgtttgtttttgagcctgtttctct
gtatagcgctggctgtcctggaactcactatgtagattgggctggcctcg
aactcagaagtctgcctgcctttgtctcccaagtgctgagatcaaagaca
tgtgtcaccgctgcctggcaaatatccattctaatttataatctttccct
ctgcatgggaattcctgggagggatatggggtagaaatttagatgactaa
aatgcaggcccatatttgggacaaatacagtctattgtatagatttcctt
tgcaccttgtcgctcctcaagccacatggtttgttccatctttctgcact
tctttctcatcttcacgttctcattggttcatgcttggctctcatccttc
cctcttctacctctaagctcagtcccacgatcactcaactgaccaattca
caggcctttag
gaattctctgatgcatagtaagattgaatttgtttttaaaacatttgtca
cattcactacatttgtaaattatctcttctgtatgaattccctgatgaat
actaagatggatctgatgggtaaagcatttgtcacttttactacttttgt
aaggtttctttccatgataaattctctgctgactttgtaggttttctctc
tgggtaagatatttgtgaaattcactacatttgtaagggttccctgcaat
attgtcttttttcaccatgactttatgtttagaaacaaaaatattgtcta
attctgcatttcggttgtgttttttcttctgcatgttaattccttgattg
agactaatggtagaaaacaaacttaaactgtttacagagtcattgtattt
gcaaacttctttagtgttcctgggcttaagtcttttttggttcgagaatt
gaagagcatcagagctgtgattagttttgtaaggtgtacactggagggat
tcaagaatgacattgctaagcttgtcccatttagaagacttctcttgaat
attcatgtgttcatggacaatgtactggctgtcttgatccaataccttcc
cattctttccacgtatgcaatgattttctgaaaaaaaaggggggggcaat
tagaggtgacatgaattacttatataaggagtaagggactcaataatcag
tgagcttatggattcgtactctcaagaaaggtttctctctctctctctct
ctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146705235_146706003
seq2: B6Ng01-248H08.g_63_831 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACCTTTCTTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACCTTTCTTGAGA  50

seq1  GTACGAATCCATAAGCTCACTGATTATTGAGTCCCTTACTCCTTATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGAATCCATAAGCTCACTGATTATTGAGTCCCTTACTCCTTATATAA  100

seq1  GTAATTCATGTCACCTCTAATTGCCCCCCCCTTTTTTTTCAGAAAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCATGTCACCTCTAATTGCCCCCCCCTTTTTTTTCAGAAAATCAT  150

seq1  TGCATACGTGGAAAGAATGGGAAGGTATTGGATCAAGACAGCCAGTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACGTGGAAAGAATGGGAAGGTATTGGATCAAGACAGCCAGTACAT  200

seq1  TGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGC  250

seq1  TTAGCAATGTCATTCTTGAATCCCTCCAGTGTACACCTTACAAAACTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATGTCATTCTTGAATCCCTCCAGTGTACACCTTACAAAACTAAT  300

seq1  CACAGCTCTGATGCTCTTCAATTCTCGAACCAAAAAAGACTTAAGCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCTGATGCTCTTCAATTCTCGAACCAAAAAAGACTTAAGCCCAG  350

seq1  GAACACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTAAGTT  400

seq1  TGTTTTCTACCATTAGTCTCAATCAAGGAATTAACATGCAGAAGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTACCATTAGTCTCAATCAAGGAATTAACATGCAGAAGAAAAAA  450

seq1  CACAACCGAAATGCAGAATTAGACAATATTTTTGTTTCTAAACATAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCGAAATGCAGAATTAGACAATATTTTTGTTTCTAAACATAAAGT  500

seq1  CATGGTGAAAAAAGACAATATTGCAGGGAACCCTTACAAATGTAGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAAAAAAGACAATATTGCAGGGAACCCTTACAAATGTAGTGAAT  550

seq1  TTCACAAATATCTTACCCAGAGAGAAAACCTACAAAGTCAGCAGAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAATATCTTACCCAGAGAGAAAACCTACAAAGTCAGCAGAGAATT  600

seq1  TATCATGGAAAGAAACCTTACAAAAGTAGTAAAAGTGACAAATGCTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGAAAGAAACCTTACAAAAGTAGTAAAAGTGACAAATGCTTTAC  650

seq1  CCATCAGATCCATCTTAGTATTCATCAGGGAATTCATACAGAAGAGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGATCCATCTTAGTATTCATCAGGGAATTCATACAGAAGAGATAA  700

seq1  TTTACAAATGTAGTGAATGTGACAAATGTTTTAAAAACAAATTCAATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAATGTAGTGAATGTGACAAATGTTTTAAAAACAAATTCAATCTT  750

seq1  ACTATGCATCAGAGAATTC  769
      |||||||||||||||||||
seq2  ACTATGCATCAGAGAATTC  769