BAC Information

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BAC

Clone NameB6Ng01-248I21
Chromosome4 (Build37)
Map Location 34,055,172 - 34,264,411
singlet/doubletdoublet
Overlap geneSpaca1
Upstream geneRragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1
Downstream geneLOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248I21.bB6Ng01-248I21.g
ACCGA056602GA056603
length1,1641,053
definitionB6Ng01-248I21.b B6Ng01-248I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,055,172 - 34,056,318)(34,263,357 - 34,264,411)
sequence
gaattctgttttctatggcctgccttgggaaggagtgagtcattgcaaac
catagatgaaaactaaaaaacataacacagactcccaaatcagctcacgg
agctttccctcgctccctttaaacccttccccttgctgaatcctctgggc
tcttggacttggcattcataaaaaactgtcctcttttcttgattaggtaa
gttttcttagctttggatgtaagttctggaaattcttatcatcttttagt
tgcaagtgagactaagaaacatactgtaagatagatcctgaagagtctca
tctttagccttccagacatgaagggagatccaacagcctctcaggacccg
tgagatataggtagaatggagatcacaaggctacatacgaatcctacatc
aaatactgtatttgcacatgaggttgaaagagtccatttcactgaaccaa
aagagcgcattctaaagacaacgaggaataaatagcaccggcctcaaatg
tgaataatcgaaaaatgaaaaaaaattaaaatgtgtacaaaggaccccgg
agtcatagacactctcaggcaacagcttcagcacaccttgctgatggtaa
gctttcggcctgttcttgcttaggctcgagtctgtgaggcagagccattt
gtttttctgggaattttcatcagtagtaggaaaaatttgtaccaaaatgg
gacatttaaaatgatctcctggctggagatgacacttgtcacagttgatt
gttagtaacaagggagaattggtgtgtatagtctaatgtctgcaatgtat
ttatttcattatcatcatagaaagctgggttaaacataccctcctattag
agtagatttctgctatccctttctccttctaggctgccatgacgaaaaga
tgaaaaagaaagtcacctagctgtgatcctaggaaatgtgaggactagaa
attattcccttttagccttatcttttgtttttgaattgttaaccaaaaga
aaaagcgtttcagggaaatgtcgattaaggcaattggaacaattctgggc
tggtagacaattcgaattgttgaggagcaggaggtgactcgagggctcta
tttctgcattcatcatctcgattatgttctctccaatatgtcttcaggac
ggatgctgttatgg
gaattctcctaacacctgcctgagcatcgaggtaggcttttaccctgttc
tgtccacaggtcacaccccaggcctggtcgatatcttaatcacagtgttg
atgaagactttttcagaggatccagctgagccacattcagactccagaga
aaatttgagacaagcaggtgttgttttaaatggctaaatatgtggcaatt
tgatgtgcagccaagaacatttcaatcagatctgatataaaattttactt
tttttttttgtctaagaagatgcagatcgggcctatgatatttaaaatta
ttttaatcagaactttagaagcatttagggtagttctaaaatcatatttt
aaaaaaaccacatcaacttatggccagaaccaggagaaactgatgtatag
acattttaaagcctgtcgataaatttgatcttcctaatatgtgaagagta
atatatcagtaagagaaaggtctgaaatccattaacatgagagaaggatg
gcagtggacagaaaagaaagtccaacacggggttaggggagggtttccta
agcaaaaaaagacaaaataaacatgccaagaccggtttcctacttgtcac
attgcagaagcatttgatggctcaggcaggacagtaggaatgttgttcgc
gtgttagcctccatgcttccagatgcagtacttaatcaaagtttagaaag
ggcaaacacacctttgacccatcaactctacttctaaatatttatttcct
ttttaaaatgttattttttgagaatttcatctgtatgtttttatcatatt
ttccccatcctccaactctccctaaaccctctcctccttacccaattttc
tgttcatacctactctaaaagaaaaaaaaaaatgaaaaaaaaaaagccac
tgatattcatgggagtatgatttgcgtttgtcatgactcctgagcatgac
agccccagagtgtgttgcttagccagtggcattccactggaagaaaacct
tctcttcagcagactccttatccacggagattctcatctccagtaatagc
tta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34055172_34056318
seq2: B6Ng01-248I21.b_48_1211

seq1  GAATTCTGTTTTCTATGGCCTGCCTTGGGAAGGAGTGAGTCATTGCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTCTATGGCCTGCCTTGGGAAGGAGTGAGTCATTGCAAAC  50

seq1  CATAGATGAAAACTAAAAAACATAACACAGACTCCCAAATCAGCTCACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGAAAACTAAAAAACATAACACAGACTCCCAAATCAGCTCACGG  100

seq1  AGCTTTCCCTCGCTCCCTTTAAACCCTTCCCCTTGCTGAATCCTCTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCCTCGCTCCCTTTAAACCCTTCCCCTTGCTGAATCCTCTGGGC  150

seq1  TCTTGGACTTGGCATTCATAAAAAACTGTCCTCTTTTCTTGATTAGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGACTTGGCATTCATAAAAAACTGTCCTCTTTTCTTGATTAGGTAA  200

seq1  GTTTTCTTAGCTTTGGATGTAAGTTCTGGAAATTCTTATCATCTTTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTAGCTTTGGATGTAAGTTCTGGAAATTCTTATCATCTTTTAGT  250

seq1  TGCAAGTGAGACTAAGAAACATACTGTAAGATAGATCCTGAAGAGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGAGACTAAGAAACATACTGTAAGATAGATCCTGAAGAGTCTCA  300

seq1  TCTTTAGCCTTCCAGACATGAAGGGAGATCCAACAGCCTCTCAGGACCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGCCTTCCAGACATGAAGGGAGATCCAACAGCCTCTCAGGACCCG  350

seq1  TGAGATATAGGTAGAATGGAGATCACAAGGCTACATACGAATCCTACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATAGGTAGAATGGAGATCACAAGGCTACATACGAATCCTACATC  400

seq1  AAATACTGTATTTGCACATGAGGTTGAAAGAGTCCATTTCACTGAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGTATTTGCACATGAGGTTGAAAGAGTCCATTTCACTGAACCAA  450

seq1  AAGAGCGCATTCTAAAGACAACGAGGAATAAATAGCACCGGCCTCAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGCATTCTAAAGACAACGAGGAATAAATAGCACCGGCCTCAAATG  500

seq1  TGAATAATCGAAAAATGAAAAAAAATTAAAATGTGTACAAAGGACCCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATCGAAAAATGAAAAAAAATTAAAATGTGTACAAAGGACCCCGG  550

seq1  AGTCATAGACACTCTCAGGCAACAGCTTCAGCACACCTTGCTGATGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGACACTCTCAGGCAACAGCTTCAGCACACCTTGCTGATGGTAA  600

seq1  GCTTTCGGCCTGTTCTTGCTTAGGCTCGAGTCTGTGAGGCAGAGCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCGGCCTGTTCTTGCTTAGGCTCGAGTCTGTGAGGCAGAGCCATTT  650

seq1  GTTTTTCTGGGAATTTTCATCAGTAGTAGGAAAAATTTGTACCAAAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTGGGAATTTTCATCAGTAGTAGGAAAAATTTGTACCAAAATGG  700

seq1  GACATTTAAAATGATCTCCTGGCTGGAGATGACACTTGTCACAGTTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTAAAATGATCTCCTGGCTGGAGATGACACTTGTCACAGTTGATT  750

seq1  GTTAGTAACAAGGGAGAATTGGTGTGTATAGTCTAATGTCTGCAATGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAACAAGGGAGAATTGGTGTGTATAGTCTAATGTCTGCAATGTAT  800

seq1  TTATTTCATTATCATCATAGAAAGCTGGGTTAAACATACCCTCCTATTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATTATCATCATAGAAAGCTGGGTTAAACATACCCTCCTATTAG  850

seq1  AGTAGATTTCTGCTATCCCTTTCTCCTTCTAGGCTGCCATGACGAAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATTTCTGCTATCCCTTTCTCCTTCTAGGCTGCCATGACGAAAAGA  900

seq1  TG-AAAAGAAAGTCACCTAGCTGTGATCCTAGGAAATGTGAGGACTAGAA  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGAAAGTCACCTAGCTGTGATCCTAGGAAATGTGAGGACTAGAA  950

seq1  ATTATT-CCTTTTAGCC-TATCTTT--GTTTTGAATTGTTTAACCAAAG-  994
      |||||| |||||||||| |||||||   |||||||||||| | | |||| 
seq2  ATTATTCCCTTTTAGCCTTATCTTTTGTTTTTGAATTGTTAACCAAAAGA  1000

seq1  AAAAGCG-TTCA-GGAAATGTCGATTAA-GCAAT--GGACAA-TCT-GGC  1037
      ||||||| |||| ||||||||||||||| |||||  | |||| ||| |||
seq2  AAAAGCGTTTCAGGGAAATGTCGATTAAGGCAATTGGAACAATTCTGGGC  1050

seq1  T-GTAGACAATTCGAATTGTTGAAGGAGCA-GAGGTGACTCCGAGGGCTC  1085
      | |||||||||||||||||||| ||||||| ||||||||| |||||||||
seq2  TGGTAGACAATTCGAATTGTTG-AGGAGCAGGAGGTGACT-CGAGGGCTC  1098

seq1  TA-TTCTGCA-TCATCATCTCGATTATGT--TCTCCCATATGTCTTTCAG  1131
      || ||||||| ||||||||||||||||||  ||||| |||||||||   |
seq2  TATTTCTGCATTCATCATCTCGATTATGTTCTCTCCAATATGTCTTCAGG  1148

seq1  ACAGATGCTGTTATGG  1147
      || |||||||||||||
seq2  ACGGATGCTGTTATGG  1164

seq1: chr4_34263357_34264411
seq2: B6Ng01-248I21.g_66_1118 (reverse)

seq1  TAAGCTATTTACTGGGAGATGAGAATCTCCGTGGATAAGGGGGTCTGCTG  50
      ||||||| ||||| |||||||||||||||||||||||| || ||||||||
seq2  TAAGCTA-TTACT-GGAGATGAGAATCTCCGTGGATAA-GGAGTCTGCTG  47

seq1  -AGAGGAAGTTTTCTT-CAGTGGAATGCCACTGGCTAAACCAACCACACT  98
       |||| | |||||||| ||||||||||||||||||||| |  | ||||||
seq2  AAGAGAAGGTTTTCTTCCAGTGGAATGCCACTGGCTAAGC--AACACACT  95

seq1  CTGGGGCTGTCCATGCTCAGGAGTCATTGACCAACGCAAATCATACT-CC  147
      |||||||||| ||||||||||||||| |||| ||||||||||||||| ||
seq2  CTGGGGCTGT-CATGCTCAGGAGTCA-TGACAAACGCAAATCATACTCCC  143

seq1  ATGAATATCAGTGGC-TTTTTTTTTTCA-TTTTTTTTTTCTTTTAGAGTA  195
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  ATGAATATCAGTGGCTTTTTTTTTTTCATTTTTTTTTTTCTTTTAGAGTA  193

seq1  GGTATGAACAGAAAATTGGGTAAGGAGGAGAGGGTTTAGGGAGAGTTGGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAACAGAAAATTGGGTAAGGAGGAGAGGGTTTAGGGAGAGTTGGA  243

seq1  GGATGGGGAAAATATGATAAAAACATACAGATGAAATTCTCAAAAAATAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGAAAATATGATAAAAACATACAGATGAAATTCTCAAAAAATAA  293

seq1  CATTTTAAAAAGGAAATAAATATTTAGAAGTAGAGTTGATGGGTCAAAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAAAGGAAATAAATATTTAGAAGTAGAGTTGATGGGTCAAAGG  343

seq1  TGTGTTTGCCCTTTCTAAACTTTGATTAAGTACTGCATCTGGAAGCATGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGCCCTTTCTAAACTTTGATTAAGTACTGCATCTGGAAGCATGG  393

seq1  AGGCTAACACGCGAACAACATTCCTACTGTCCTGCCTGAGCCATCAAATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAACACGCGAACAACATTCCTACTGTCCTGCCTGAGCCATCAAATG  443

seq1  CTTCTGCAATGTGACAAGTAGGAAACCGGTCTTGGCATGTTTATTTTGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAATGTGACAAGTAGGAAACCGGTCTTGGCATGTTTATTTTGTC  493

seq1  TTTTTTTGCTTAGGAAACCCTCCCCTAACCCCGTGTTGGACTTTCTTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCTTAGGAAACCCTCCCCTAACCCCGTGTTGGACTTTCTTTTC  543

seq1  TGTCCACTGCCATCCTTCTCTCATGTTAATGGATTTCAGACCTTTCTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTGCCATCCTTCTCTCATGTTAATGGATTTCAGACCTTTCTCTT  593

seq1  ACTGATATATTACTCTTCACATATTAGGAAGATCAAATTTATCGACAGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATATTACTCTTCACATATTAGGAAGATCAAATTTATCGACAGGC  643

seq1  TTTAAAATGTCTATACATCAGTTTCTCCTGGTTCTGGCCATAAGTTGATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTCTATACATCAGTTTCTCCTGGTTCTGGCCATAAGTTGATG  693

seq1  TGGTTTTTTTAAAATATGATTTTAGAACTACCCTAAATGCTTCTAAAGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTTAAAATATGATTTTAGAACTACCCTAAATGCTTCTAAAGTT  743

seq1  CTGATTAAAATAATTTTAAATATCATAGGCCCGATCTGCATCTTCTTAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAAAATAATTTTAAATATCATAGGCCCGATCTGCATCTTCTTAGA  793

seq1  CAAAAAAAAAAAGTAAAATTTTATATCAGATCTGATTGAAATGTTCTTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAGTAAAATTTTATATCAGATCTGATTGAAATGTTCTTGG  843

seq1  CTGCACATCAAATTGCCACATATTTAGCCATTTAAAACAACACCTGCTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACATCAAATTGCCACATATTTAGCCATTTAAAACAACACCTGCTTG  893

seq1  TCTCAAATTTTCTCTGGAGTCTGAATGTGGCTCAGCTGGATCCTCTGAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATTTTCTCTGGAGTCTGAATGTGGCTCAGCTGGATCCTCTGAAA  943

seq1  AAGTCTTCATCAACACTGTGATTAAGATATCGACCAGGCCTGGGGTGTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCATCAACACTGTGATTAAGATATCGACCAGGCCTGGGGTGTGA  993

seq1  CCTGTGGACAGAACAGGGTAAAAGCCTACCTCGATGCTCAGGCAGGTGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGACAGAACAGGGTAAAAGCCTACCTCGATGCTCAGGCAGGTGTT  1043

seq1  AGGAGAATTC  1055
      ||||||||||
seq2  AGGAGAATTC  1053