BAC Information

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BAC

Clone NameB6Ng01-248L07
Chromosome4 (Build37)
Map Location 42,911,470 - 43,052,451
singlet/doubletdoublet
Overlap geneN28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik
Upstream geneLOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635
Downstream geneUnc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248L07.bB6Ng01-248L07.g
ACCGA056714GA056715
length3531,073
definitionB6Ng01-248L07.b B6Ng01-248L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,911,470 - 42,911,822)(43,051,362 - 43,052,451)
sequence
ttgtttatctaaccttacatatacccttttgaaaacaccctcaggtgcta
gagaaatggctcagtggttaaagcatttggttgttctttcacagaaccca
ggttcagtctctagcatccacatggcagctcacagttccctgtaactcct
gtctcagggaatctgataccttattctgacctctgctgacctctgccata
cacatctgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtc
tatacgcatgctggcaaacacactcatacaaaataaaatacaacctaaaa
agaaatcatactcaaaacgcaatcttggctacctcatctagcttctatca
cta
gaattcttaccctaaccttccttagggtaaaaatgggtgtcttgagagtg
aagggaaggatagaatgagcctaggtgttcttcttgtaccacaacctctc
ccacctcccaggtctaacaagtatctgagggtacagacctcatggtattc
tgggacttgttgtttttgctggccttgctctcggcatgttgggagctgta
gtccttggcagccacagtctggcacagctgtttaatgccagctgctgccc
atccccagcatggagggcgaggtttggcttatactggcttgtcccttctc
ccggcagtcctaccccatgagtcagcttgaagctgggtggcagaggagtg
agtcttcgagcgtctctgggcagggagggaactaataggactctggatta
atgagcagatgccagcatgctggggtcaagtagggcatcatgtcatcacc
tggcttcctcgaggcaagggctcaggagggcaactgagatgacctggaaa
ttggggtgctcaggaaaacgcccttcttgaactttaaagcttgggtggag
actaggaggggaagaaaggagaacaggtcatactctcacgacactgctac
tactggcgttctccgctttctagccatctcacccacatgaaggactggaa
tgttcttagggtctcattcggaagggggcctggtgaaatggcaaggtgtg
gtctgaaaggaaggcaatggctgatgtaggagagtccctacgtgtaaatg
tcccccctctctccgtctcctgccaccacatgaactgctgcagttcccca
tgtacaattaatctctccactcttcacccatacagtgtgtctctacactg
tcagctgctgaccagatcactgtgctagctcgattaagctttttttttat
tttttttttctagaatcctgaaggtgggtttctcccgagacttgaagttg
ggctggggaaagaaaccacgtctctgtcttcgggctgactatatccagag
gacagcgacgtcatcggttccgaaagactatgaatgcctgttctctgcct
cagatgtttgacactaaaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_42911470_42911822
seq2: B6Ng01-248L07.b_53_405

seq1  TTGTTTATCTAACCTTACATATACCCTTTTGAAAACACCCTCAGGTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATCTAACCTTACATATACCCTTTTGAAAACACCCTCAGGTGCTA  50

seq1  GAGAAATGGCTCAGTGGTTAAAGCATTTGGTTGTTCTTTCACAGAACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGCTCAGTGGTTAAAGCATTTGGTTGTTCTTTCACAGAACCCA  100

seq1  GGTTCAGTCTCTAGCATCCACATGGCAGCTCACAGTTCCCTGTAACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTCTCTAGCATCCACATGGCAGCTCACAGTTCCCTGTAACTCCT  150

seq1  GTCTCAGGGAATCTGATACCTTATTCTGACCTCTGCTGACCTCTGCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGGAATCTGATACCTTATTCTGACCTCTGCTGACCTCTGCCATA  200

seq1  CACATCTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC  250

seq1  TATACACATGCTGGCAAACACACTCATACAAAATAAAATAAAACCTAAAA  300
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  TATACGCATGCTGGCAAACACACTCATACAAAATAAAATACAACCTAAAA  300

seq1  AGAAATCATACTCAAAACGCAATCTTGGCTACATCATCTTGCTTCTATCA  350
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  AGAAATCATACTCAAAACGCAATCTTGGCTACCTCATCTAGCTTCTATCA  350

seq1  CTA  353
      |||
seq2  CTA  353

seq1: chr4_43051362_43052451
seq2: B6Ng01-248L07.g_67_1139 (reverse)

seq1  CATCTTTTAGT-CCACACACTCTGGAGGCAGAG-ACAGGCAAATCACTAA  48
      |||||||||||  || ||| ||| ||||||||| |||||| | ||| || 
seq2  CATCTTTTAGTGTCAAACA-TCT-GAGGCAGAGAACAGGC-ATTCA-TA-  45

seq1  CTACTTTCTGAAACCCGATGACACTGCTGTTCACTTCTGATTAT-GTCAG  97
         ||||| |||  ||||||||   |||||   | ||||  ||| |||| 
seq2  -GTCTTTCGGAA--CCGATGACGTCGCTGT---CCTCTGGATATAGTCA-  88

seq1  GCCCGAGGACAG-GACTGTGTTTC-TTCCCCAGCCCAACTTCAAG-CTCA  144
      |||||| ||||| |||   ||||| |||||||||||||||||||| ||| 
seq2  GCCCGAAGACAGAGACGTGGTTTCTTTCCCCAGCCCAACTTCAAGTCTCG  138

seq1  GGAGAAACACA-CATCAAGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAA  193
      |||||||| || | ||| |||||         | |||||||||| |||||
seq2  GGAGAAACCCACCTTCAGGATTC--------TAGAAAAAAAAAATAAAAA  180

seq1  AAAAGCCTAAATCCGAGCTAGCACCAGTGATCTGGTCAGCAGCCTGACAG  243
      |||||| |||   |||||||||| |||||||||||||||||| |||||||
seq2  AAAAGCTTAA--TCGAGCTAGCA-CAGTGATCTGGTCAGCAG-CTGACAG  226

seq1  TGTAGAGACACACTGTATGGGTGAAGAGTGGAGAGATTAATTGTACATGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGACACACTGTATGGGTGAAGAGTGGAGAGATTAATTGTACATGG  276

seq1  GGAACTGCAGCAGTTCATGTGGTGGCAGGAGACGGAGAGAGGGGGGACAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCAGCAGTTCATGTGGTGGCAGGAGACGGAGAGAGGGGGGACAT  326

seq1  TTACACGTAGGGACTCTCCTACATCAGCCATTGCCTTCCTTTCAGACCAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACGTAGGGACTCTCCTACATCAGCCATTGCCTTCCTTTCAGACCAC  376

seq1  ACCTTGCCATTTCACCAGGCCCCCTTCCGAATGAGACCCTAAGAACATTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCATTTCACCAGGCCCCCTTCCGAATGAGACCCTAAGAACATTC  426

seq1  CAGTCCTTCATGTGGGTGAGATGGCTAGAAAGCGGAGAACGCCAGTAGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTCATGTGGGTGAGATGGCTAGAAAGCGGAGAACGCCAGTAGTA  476

seq1  GCAGTGTCGTGAGAGTATGACCTGTTCTCCTTTCTTCCCCTCCTAGTCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCGTGAGAGTATGACCTGTTCTCCTTTCTTCCCCTCCTAGTCTC  526

seq1  CACCCAAGCTTTAAAGTTCAAGAAGGGCGTTTTCCTGAGCACCCCAATTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGCTTTAAAGTTCAAGAAGGGCGTTTTCCTGAGCACCCCAATTT  576

seq1  CCAGGTCATCTCAGTTGCCCTCCTGAGCCCTTGCCTCGAGGAAGCCAGGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCATCTCAGTTGCCCTCCTGAGCCCTTGCCTCGAGGAAGCCAGGT  626

seq1  GATGACATGATGCCCTACTTGACCCCAGCATGCTGGCATCTGCTCATTAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATGATGCCCTACTTGACCCCAGCATGCTGGCATCTGCTCATTAA  676

seq1  TCCAGAGTCCTATTAGTTCCCTCCCTGCCCAGAGACGCTCGAAGACTCAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTCCTATTAGTTCCCTCCCTGCCCAGAGACGCTCGAAGACTCAC  726

seq1  TCCTCTGCCACCCAGCTTCAAGCTGACTCATGGGGTAGGACTGCCGGGAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCCACCCAGCTTCAAGCTGACTCATGGGGTAGGACTGCCGGGAG  776

seq1  AAGGGACAAGCCAGTATAAGCCAAACCTCGCCCTCCATGCTGGGGATGGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAAGCCAGTATAAGCCAAACCTCGCCCTCCATGCTGGGGATGGG  826

seq1  CAGCAGCTGGCATTAAACAGCTGTGCCAGACTGTGGCTGCCAAGGACTAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGGCATTAAACAGCTGTGCCAGACTGTGGCTGCCAAGGACTAC  876

seq1  AGCTCCCAACATGCCGAGAGCAAGGCCAGCAAAAACAACAAGTCCCAGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAACATGCCGAGAGCAAGGCCAGCAAAAACAACAAGTCCCAGAA  926

seq1  TACCATGAGGTCTGTACCCTCAGATACTTGTTAGACCTGGGAGGTGGGAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGAGGTCTGTACCCTCAGATACTTGTTAGACCTGGGAGGTGGGAG  976

seq1  AGGTTGTGGTACAAGAAGAACACCTAGGCTCATTCTATCCTTCCCTTCAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGGTACAAGAAGAACACCTAGGCTCATTCTATCCTTCCCTTCAC  1026

seq1  TCTCAAGACACCCATTTTTACCCTAAGGAAGGTTAGGGTAAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGACACCCATTTTTACCCTAAGGAAGGTTAGGGTAAGAATTC  1073