BAC Information

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BAC

Clone NameB6Ng01-249K01
Chromosome4 (Build37)
Map Location 133,393,281 - 133,535,162
singlet/doubletdoublet
Overlap geneRps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds
Upstream genePpp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
Downstream geneLin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249K01.bB6Ng01-249K01.g
ACCGA057400GA057401
length1,0961,168
definitionB6Ng01-249K01.b B6Ng01-249K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,534,081 - 133,535,162)(133,393,281 - 133,394,450)
sequence
gaattctgcagagcccagagagcgcttctggaagcttcctatcgtcaggg
ttgtcagtgggctccctaactcttgtctgcatccgactacgactgctcat
atgggcagagacactaacacgtagttgctgcgctggttctgtctgtatct
gtttaactctcccttaatgtatcagccttgtgtccttatttcttcagata
tgaaaacagggacaggaactaactgtgccaaggccacagagctagggacc
ggaattttgaaatcctagatgtttcctaagtctggagagaaaatgggcag
gaagaaggaatgatgtaagtattagcgccccttttgggaacctaatggaa
gccatagaagatgtccactgaattgcagggttgatacttaacactctgtc
acatacactgctctcagggttcataggatccccaaatctgtccacaagcc
cccgtctggaactcctagcattagtgacttgaattgtgaggtttgttttt
ttgttttgttttgttttgttttgtttcgaaacagggtttctctgtgtagt
cctggctgtcctggaactcactttgtagaccaggctggccttgaactcag
aaatccgcctgcctctgcctcccaagtgctgggattaaaggcttgcgcca
tcacgcccggcgaatcgtgaggttttaccattgagtctcacattatgagt
catttgaacaaggcagctcagaacaggtaaaaagagaactagcacagcgt
ctgttactttgctgcctgggaggaggccatcagagttccctgcagctggg
gctgcctccaaaactggcacatactttgtatttttctttgattgagaaac
ttttctgaagtacaccttgtacttttgacacctgcagtctaggtcttcag
atgtcactagtgatggtttagaatagtccctttctaacttgaggatgctg
cgagtggcagccaccaccatcaagttatgtagatgcttcctagaatacct
ggctctgagaattcaatgagtctttaagaaccttccttctttcctctcct
ggtggttcagtgggctaatttcaacacctactccctttttcctttc
gaattccaggacagccagggctatacagagaaaccctgtctccaaaaaaa
aaaaaaaaaacaaaaaaaaaacaaaaaaaaaaaccaaaacaaaacccaaa
acgaaagatgtgacaaaaggttcccaagagcagaagcacatagaaatagt
gagtttgtgagaaaggctcactaatgttcatcaccaggaaatgaatacta
aactcacaaagagaaaccactccacacccaccagtgtgactatatttaaa
acaactgataccacagtctaagcccaggtgtccaaccttgtgacacttca
acctggttttgtcatctacacgtgtgttgggcctcgttcatagactgcct
tggacccctgtagccagttagagacactggaagatcatgcattcctggta
ggaaaggaaagtggtcactttggaaaacattatatacatgaatttctctg
tgtagccctggctgccctgggaactcactctgtagaccaggctggtcttg
aactcagagatccacctgcctctgcctctggagtgctgggattaaaggta
tacggcaccttgcctgattttctttctttttcgtttttttttttttttca
agacagagttttgctctgtagcacaggatggcctcaaaaaatgcagtatg
tttgtttgtttaaaacagggctttctgtcctggaactcactgtatagacc
aggctggccttacagactcaccgagatctacctaccttcctttgtctcct
gagtgttgagattaaaggaaagccacttctggctatacccaacacatact
atcctacacacacacatcgcacacacacacacacacacacacacacacac
acacacacaattatatatatatataatatatattatataaaatgtgtgtt
ttgccctcatgtatatatatgtaccaccatgtgttccctgggtgccagcc
tgaggtcagaagtaaaatggatgtggtttgtcttgcaagagcaccagtgt
ctttttttttttttctctcgaagacaggaattcttcctgcttttgttcct
ttgtgaactgagaggaacacacttggaagctctaagtgttcaagctcacg
aacatttcgcccctactgtaaaggtttagaatacaatgtggaaccacagg
gggctgaaacactggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133534081_133535162
seq2: B6Ng01-249K01.b_44_1139 (reverse)

seq1  GAAAGGGAAA--GGGGTAGGTGTCGAAATTAG-CCACTGACACAGCAGGA  47
      |||||| |||  || |||||||| |||||||| |||||||  || |||||
seq2  GAAAGGAAAAAGGGAGTAGGTGTTGAAATTAGCCCACTGAACCACCAGGA  50

seq1  GACGAAAG-AGGAAGGTCTTAAAAGACTCTATGAGAGTCTCAGAGCCAGG  96
      || ||||| ||||||||  | ||||||||  ||| | |||||||||||||
seq2  GAGGAAAGAAGGAAGGTTCTTAAAGACTCATTGA-ATTCTCAGAGCCAGG  99

seq1  TA-TCTA-GAAGCATCTACATAACTTGATGGTGGTGGCTGCCACTCGCAG  144
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGGAAGCATCTACATAACTTGATGGTGGTGGCTGCCACTCGCAG  149

seq1  CATCCTCAAGTTAGAAAGGGACTATTCT-AACCATCACTAGTGACATCTG  193
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATCCTCAAGTTAGAAAGGGACTATTCTAAACCATCACTAGTGACATCTG  199

seq1  -AGACCTAGACTGCAGGTGTC-AAAGTAC-AGGTGTACTTCAG-AAAGTT  239
       |||||||||||||||||||| ||||||| ||||||||||||| ||||||
seq2  AAGACCTAGACTGCAGGTGTCAAAAGTACAAGGTGTACTTCAGAAAAGTT  249

seq1  TCTC-ATCAA--GAAAATACAAAGTATGTGCCAGTTTTGGAGGCAGCCCC  286
      |||| |||||   |||||||||||||||||||||||||||||||||||||
seq2  TCTCAATCAAAGAAAAATACAAAGTATGTGCCAGTTTTGGAGGCAGCCCC  299

seq1  AGCTGCAGGGAACTCTGATGGCCTCCTCCCAGGCAGC-AAGTAACAGACG  335
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCTGCAGGGAACTCTGATGGCCTCCTCCCAGGCAGCAAAGTAACAGACG  349

seq1  CTGTGCTAGTTCTCTTTTTACCTGTTCTGAGCTGCCTTGTTCAAATGACT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTAGTTCTCTTTTTACCTGTTCTGAGCTGCCTTGTTCAAATGACT  399

seq1  CATAATGTGAGACTCAATGGTAAAACCTCACGATTCGCCGGGCGTGATGG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTGAGACTCAATGGTAAAACCTCACGATTCGCCGGGCGTGATGG  449

seq1  CGCAAGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTG  499

seq1  AGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACT  549

seq1  ACACAGAGAAACCCTGTTTCGAAACAAAACAAAACAAAACAAAACAAAAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTTTCGAAACAAAACAAAACAAAACAAAACAAAAA  599

seq1  AACAAACCTCACAATTCAAGTCACTAATGCTAGGAGTTCCAGACGGGGGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCTCACAATTCAAGTCACTAATGCTAGGAGTTCCAGACGGGGGC  649

seq1  TTGTGGACAGATTTGGGGATCCTATGAACCCTGAGAGCAGTGTATGTGAC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGACAGATTTGGGGATCCTATGAACCCTGAGAGCAGTGTATGTGAC  699

seq1  AGAGTGTTAAGTATCAACCCTGCAATTCAGTGGACATCTTCTATGGCTTC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTAAGTATCAACCCTGCAATTCAGTGGACATCTTCTATGGCTTC  749

seq1  CATTAGGTTCCCAAAAGGGGCGCTAATACTTACATCATTCCTTCTTCCTG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGTTCCCAAAAGGGGCGCTAATACTTACATCATTCCTTCTTCCTG  799

seq1  CCCATTTTCTCTCCAGACTTAGGAAACATCTAGGATTTCAAAATTCCGGT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTCTCTCCAGACTTAGGAAACATCTAGGATTTCAAAATTCCGGT  849

seq1  CCCTAGCTCTGTGGCCTTGGCACAGTTAGTTCCTGTCCCTGTTTTCATAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCTCTGTGGCCTTGGCACAGTTAGTTCCTGTCCCTGTTTTCATAT  899

seq1  CTGAAGAAATAAGGACACAAGGCTGATACATTAAGGGAGAGTTAAACAGA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAATAAGGACACAAGGCTGATACATTAAGGGAGAGTTAAACAGA  949

seq1  TACAGACAGAACCAGCGCAGCAACTACGTGTTAGTGTCTCTGCCCATATG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAGAACCAGCGCAGCAACTACGTGTTAGTGTCTCTGCCCATATG  999

seq1  AGCAGTCGTAGTCGGATGCAGACAAGAGTTAGGGAGCCCACTGACAACCC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCGTAGTCGGATGCAGACAAGAGTTAGGGAGCCCACTGACAACCC  1049

seq1  TGACGATAGGAAGCTTCCAGAAGCGCTCTCTGGGCTCTGCAGAATTC  1082
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGATAGGAAGCTTCCAGAAGCGCTCTCTGGGCTCTGCAGAATTC  1096

seq1: chr4_133393281_133394450
seq2: B6Ng01-249K01.g_66_1233

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCCAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCCAAAAAAA  50

seq1  AAAAAAAAAACAAAAAAAAAACAAAAAAAAAAACCAAAACAAAACCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAAAAAAAAAACAAAAAAAAAAACCAAAACAAAACCCAAA  100

seq1  ACGAAAGATGTGACAAAAGGTTCCCAAGAGCAGAAGCACATAGAAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAGATGTGACAAAAGGTTCCCAAGAGCAGAAGCACATAGAAATAGT  150

seq1  GAGTTTGTGAGAAAGGCTCACTAATGTTCATCACCAGGAAATGAATACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTGAGAAAGGCTCACTAATGTTCATCACCAGGAAATGAATACTA  200

seq1  AACTCACAAAGAGAAACCACTCCACACCCACCAGTGTGACTATATTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAAAGAGAAACCACTCCACACCCACCAGTGTGACTATATTTAAA  250

seq1  ACAACTGATACCACAGTCTAAGCCCAGGTGTCCAACCTTGTGACACTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGATACCACAGTCTAAGCCCAGGTGTCCAACCTTGTGACACTTCA  300

seq1  ACCTGGTTTTGTCATCTACACGTGTGTTGGGCCTCGTTCATAGACTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTTTGTCATCTACACGTGTGTTGGGCCTCGTTCATAGACTGCCT  350

seq1  TGGACCCCTGTAGCCAGTTAGAGACACTGGAAGATCATGCATTCCTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCTGTAGCCAGTTAGAGACACTGGAAGATCATGCATTCCTGGTA  400

seq1  GGAAAGGAAAGTGGTCACTTTGGAAAACATTATATACATGAATTTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAAGTGGTCACTTTGGAAAACATTATATACATGAATTTCTCTG  450

seq1  TGTAGCCCTGGCTGCCCTGGGAACTCACTCTGTAGACCAGGCTGGTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGCCCTGGGAACTCACTCTGTAGACCAGGCTGGTCTTG  500

seq1  AACTCAGAGATCCACCTGCCTCTGCCTCTGGAGTGCTGGGATTAAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGATCCACCTGCCTCTGCCTCTGGAGTGCTGGGATTAAAGGTA  550

seq1  TACGGCACCTTGCCTGATTTTCTTTCTTTTTCGTTTTTTTTTTTTTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCACCTTGCCTGATTTTCTTTCTTTTTCGTTTTTTTTTTTTTTTCA  600

seq1  AGACAGAGTTTTGCTCTGTAGCACAGGATGGCCTCAAAAAATGCAGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTTTTGCTCTGTAGCACAGGATGGCCTCAAAAAATGCAGTATG  650

seq1  TTTGTTTGTTTAAAACAGGGCTTTCTGTCCTGGAACTCACTGTATAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTAAAACAGGGCTTTCTGTCCTGGAACTCACTGTATAGACC  700

seq1  AGGCTGGCCTTACAGACTCACCGAGATCTACCTACCTTCCTTTGTCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTTACAGACTCACCGAGATCTACCTACCTTCCTTTGTCTCCT  750

seq1  GAGTGTTGAGATTAAAGGAAAGCCACTTCTGGCTATACCCAACACATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGAGATTAAAGGAAAGCCACTTCTGGCTATACCCAACACATACT  800

seq1  ATCCTACACACACACA-CACACACACACACACACACACACACACACACAC  849
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  ATCCTACACACACACATCGCACACACACACACACACACACACACACACAC  850

seq1  ACACACACACATTATATATATATATAATATATA-TATATAAAATGTGTGT  898
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  ACACACACA-ATTATATATATATATAATATATATTATATAAAATGTGTGT  899

seq1  TTTGCCCTCATGTATATATATGTACCA-CATGTGTTCC--TGGTGCCAG-  944
      ||||||||||||||||||||||||||| ||||||||||   |||||||| 
seq2  TTTGCCCTCATGTATATATATGTACCACCATGTGTTCCCTGGGTGCCAGC  949

seq1  CTGAGGTCAGAAGTAGAAGTGGATGTTGGTTGGTCTTTGCAAGAGCAGCC  994
      ||||||||||||||| || |||||| ||||| ||| ||||||||||| ||
seq2  CTGAGGTCAGAAGTA-AAATGGATG-TGGTTTGTC-TTGCAAGAGCA-CC  995

seq1  AGTGTTCTTTTTTTTTTTTTTTCTTCGAGACAGGATTTCTCTCTGCTTTT  1044
      |||| ||||||||||||||| |||   |||||||| ||||  ||||||||
seq2  AGTG-TCTTTTTTTTTTTTTCTCTCGAAGACAGGAATTCTTCCTGCTTTT  1044

seq1  GTTTCTTTGTTGACT--GAGGGACACACTTTGAAGCTC-AAGTTGGTTCA  1091
      ||| ||||||  |||  |||| |||||||| ||||||| ||||  |||||
seq2  GTTCCTTTGTGAACTGAGAGGAACACACTTGGAAGCTCTAAGT--GTTCA  1092

seq1  AGCTCACGACAATTCTGCCCCCATCTGTAAAGTGTTAGAATTACAGATGT  1141
      |||||||||  |||  ||||| | ||||||||  |||||| |||| ||||
seq2  AGCTCACGAACATTTCGCCCCTA-CTGTAAAGGTTTAGAA-TACA-ATGT  1139

seq1  GG-ACCACCATGGGCTGACAACACTGGTCT  1170
      || |||||   ||||||| |||||||||||
seq2  GGAACCACAGGGGGCTGA-AACACTGGTCT  1168