BAC Information

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BAC

Clone NameB6Ng01-249P02
Chromosome4 (Build37)
Map Location 54,945,878 - 55,083,632
singlet/doubletdoublet
Overlap geneEG666920, Zfp462
Upstream geneLOC100041280, LOC666901, LOC100041303, LOC384018
Downstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249P02.bB6Ng01-249P02.g
ACCGA057631GA057632
length1,180340
definitionB6Ng01-249P02.b B6Ng01-249P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,082,448 - 55,083,632)(54,945,878 - 54,946,220)
sequence
gaattcctgtgaagagtgattaagaaagatgctcaatggcctccatacat
acagccccctctacatatacatggacgcgtagaaaatgccaatctttgcc
ctgagggtcaaattccaattttgtgctgtggcttataggctttccccaag
ctctcctgttcccatcatctccacttactgagcttcccgacatgccgctt
ctaagcttatgcctgccacatgccttgcacacattcactcagtcccccag
cccagacgagggtcttcatcaggaagccttcctgttgttgctccgccatt
aatcacgctgcttctccctcccacagcatccagacttgctcacctcacac
acaccacgttccctaaataaccctcctggtctgcctctctgcctccaagc
tgcaagccctaaggacagactttctgtcctcttctagttccatctcttct
caacagcagtctctacctcagggtgggcactgctcggacagcctggctac
catctagcttcattttgacaagaatctccaatgtcttccgccctgtgtaa
cacacacagtgttccatgagtgaatgtcatcttgaatcaccttatcatat
ttcataagaggatatgatctcctagtcctctatgtatttatctggggtta
tgttattcctggctctcgctttctttcgtgttaaggtttcatttcataac
tgaaatttccagatgtaaagttaaagagtctgagccaaagggtatagagt
tgattatggttccaatgtacctctcagttagctttggaggagaccaaagg
tcttccctggaccagatgactgatggctaagtggctaatatcttgatggt
ccacgagattcaattgaaagccattcacctcccccacctcccaggaccag
aagtaatatcgcattcatcctgtttccataaaaggtgacaccaagggaga
aagagcgggtctaggagcgtttcatctagaacccttcccgagtttcacag
atgaaaaaagtctccacgtgtctgagcccacgtttgttcaatttatacca
ctatatatgcctgacccacatgttctggtgaaagtcacccatgaattacc
ccgaccctacatcctattctaagtacttatcagtggtgggtgaaacggca
ggaacgaactggaactgtgtccacaggctg

cagcacccacatagtgggtgtgggccttacaaccacctttaaatctagtt
ccagagaatctcacaccctcttcttgactctagagaactgcacacatgtg
gtgcacagtcatacattcaggtaaatatcaaaacctttttttgggggggt
ggagggagcggggaggcaataaaaaaaattcctccagatatgcccagagg
ccaatttgatggcggcagcctttcagttgagtttttctcttcccagatgt
gtcaggttgatgactaaagccaaccttgacaagagggaaggacatttttt
tttaattgttcgctccaagaacttttctattctgaagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55082448_55083632
seq2: B6Ng01-249P02.b_48_1227 (reverse)

seq1  CAGCCTGTGGACACCATTTCTCATGTCCCTCTTCACTGCCGTTTTCACCC  50
      ||||||||||||| || ||| ||  ||  ||    |||||| ||||||||
seq2  CAGCCTGTGGACA-CAGTTC-CAGTTCGTTC----CTGCCG-TTTCACCC  43

seq1  A-CACTGGGTTAGTGACTTTTGATGGGGATGTTGGGTTGGGGTAAATTCA  99
      | |||| | | ||| || || ||   |||||| |||| ||||| ||||||
seq2  ACCACT-GATAAGT-AC-TTAGAATAGGATGTAGGGTCGGGGT-AATTCA  89

seq1  TGTGTGACTTTCA-CAGAACATGTGGGTCAG---CATATAGTGTTATAAT  145
      || |||||||||| |||||||||||||||||    |||||||| ||||| 
seq2  TGGGTGACTTTCACCAGAACATGTGGGTCAGGCATATATAGTGGTATAAA  139

seq1  TTGAAC-AACGTGGGCTTCAGACACGTGG-GGCTTTTTTCATCTGTGAAA  193
      |||||| ||||||||| |||||||||||| | ||||||||||||||||||
seq2  TTGAACAAACGTGGGC-TCAGACACGTGGAGACTTTTTTCATCTGTGAAA  188

seq1  CTCGGGGAAGGGTTCTAGATGAAACGCTCCTAGACCCGCTCTTTCTCCCT  243
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTC-GGGAAGGGTTCTAGATGAAACGCTCCTAGACCCGCTCTTTCTCCCT  237

seq1  TGGTTGTCACCTTTTATGGAAACAGGATG-ATGCGATATTACTTCTGGTC  292
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGG-TGTCACCTTTTATGGAAACAGGATGAATGCGATATTACTTCTGGTC  286

seq1  CTGGGAGGTGGGGGAGGTGAATGGCTTTCAATTG-ATCTCGTGGACCATC  341
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGGGAGGTGGGGGAGGTGAATGGCTTTCAATTGAATCTCGTGGACCATC  336

seq1  AAGATATTAGCCACTTAGCCATCAGTCATCTGGTCCAGGGAAGACCTTTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAGCCACTTAGCCATCAGTCATCTGGTCCAGGGAAGACCTTTG  386

seq1  GTCTCCTCCAAAGCTAACTGAGAGGTACATTGGAACCATAATCAACTCTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCCAAAGCTAACTGAGAGGTACATTGGAACCATAATCAACTCTA  436

seq1  TACCCTTTGGCTCAGACTCTTTAACTTTACATCTGGAAATTTCAGTTATG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTGGCTCAGACTCTTTAACTTTACATCTGGAAATTTCAGTTATG  486

seq1  AAATGAAACCTTAACACGAAAGAAAGCGAGAGCCAGGAATAACATAACCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAACCTTAACACGAAAGAAAGCGAGAGCCAGGAATAACATAACCC  536

seq1  CAGATAAATACATAGAGGACTAGGAGATCATATCCTCTTATGAAATATGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATACATAGAGGACTAGGAGATCATATCCTCTTATGAAATATGA  586

seq1  TAAGGTGATTCAAGATGACATTCACTCATGGAACACTGTGTGTGTTACAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGATTCAAGATGACATTCACTCATGGAACACTGTGTGTGTTACAC  636

seq1  AGGGCGGAAGACATTGGAGATTCTTGTCAAAATGAAGCTAGATGGTAGCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGAAGACATTGGAGATTCTTGTCAAAATGAAGCTAGATGGTAGCC  686

seq1  AGGCTGTCCGAGCAGTGCCCACCCTGAGGTAGAGACTGCTGTTGAGAAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCCGAGCAGTGCCCACCCTGAGGTAGAGACTGCTGTTGAGAAGA  736

seq1  GATGGAACTAGAAGAGGACAGAAAGTCTGTCCTTAGGGCTTGCAGCTTGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACTAGAAGAGGACAGAAAGTCTGTCCTTAGGGCTTGCAGCTTGG  786

seq1  AGGCAGAGAGGCAGACCAGGAGGGTTATTTAGGGAACGTGGTGTGTGTGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGAGGCAGACCAGGAGGGTTATTTAGGGAACGTGGTGTGTGTGA  836

seq1  GGTGAGCAAGTCTGGATGCTGTGGGAGGGAGAAGCAGCGTGATTAATGGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCAAGTCTGGATGCTGTGGGAGGGAGAAGCAGCGTGATTAATGGC  886

seq1  GGAGCAACAACAGGAAGGCTTCCTGATGAAGACCCTCGTCTGGGCTGGGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAACAACAGGAAGGCTTCCTGATGAAGACCCTCGTCTGGGCTGGGG  936

seq1  GACTGAGTGAATGTGTGCAAGGCATGTGGCAGGCATAAGCTTAGAAGCGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTGAATGTGTGCAAGGCATGTGGCAGGCATAAGCTTAGAAGCGG  986

seq1  CATGTCGGGAAGCTCAGTAAGTGGAGATGATGGGAACAGGAGAGCTTGGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCGGGAAGCTCAGTAAGTGGAGATGATGGGAACAGGAGAGCTTGGG  1036

seq1  GAAAGCCTATAAGCCACAGCACAAAATTGGAATTTGACCCTCAGGGCAAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTATAAGCCACAGCACAAAATTGGAATTTGACCCTCAGGGCAAA  1086

seq1  GATTGGCATTTTCTACGCGTCCATGTATATGTAGAGGGGGCTGTATGTAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCATTTTCTACGCGTCCATGTATATGTAGAGGGGGCTGTATGTAT  1136

seq1  GGAGGCCATTGAGCATCTTTCTTAATCACTCTTCACAGGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCATTGAGCATCTTTCTTAATCACTCTTCACAGGAATTC  1180


seq1: chr4_54945878_54946220
seq2: B6Ng01-249P02.g_68_411

seq1  GAATTCCAGCACCCACATAGTGGGTGTGGGCCTTACAACCACCTTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACCCACATAGTGGGTGTGGGCCTTACAACCACCTTTAAAT  50

seq1  CTAGTTCCAGAGAATCTCACACCCTCTTCTTGACTCTAGAGAACTGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCCAGAGAATCTCACACCCTCTTCTTGACTCTAGAGAACTGCACA  100

seq1  CATGTGGTGCACAGTCATACATTCAGGTAAATATCAAAACCTTTTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTGCACAGTCATACATTCAGGTAAATATCAAAACCTTTTTTTGG  150

seq1  GGGGGTGGAGGGAGCGGGGAGGCAATAAAAAAAATTCCTCCAGATATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGAGGGAGCGGGGAGGCAATAAAAAAAATTCCTCCAGATATGCC  200

seq1  CAGAGGCCAATTTGATGGCGGCAGCCTTTCAGTTGAGTTTTTCTCTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCAATTTGATGGCGGCAGCCTTTCAGTTGAGTTTTTCTCTTCCC  250

seq1  AGATGTGTCAGGTTGATGACTAAAGCCAACCTTGACAAGAGGGAAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTCAGGTTGATGACTAAAGCCAACCTTGACAAGAGGGAAGGACA  300

seq1  -GAGAAGAGAAGTGTACGCTCCAAGAACTTAGCTATGCTGAAGT  343
               || ||| ||||||||||||||  |||| |||||||
seq2  TTTTTTTTTAATTGTTCGCTCCAAGAACTTTTCTATTCTGAAGT  344


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