BAC Information

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BAC

Clone NameB6Ng01-250J01
Chromosome4 (Build37)
Map Location 59,657,892 - 59,793,678
singlet/doubletdoublet
Overlap geneE130308A19Rik, LOC100041592, 1110054O05Rik
Upstream geneLOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2
Downstream geneSnx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250J01.bB6Ng01-250J01.g
ACCGA058075GA058076
length1,091686
definitionB6Ng01-250J01.b B6Ng01-250J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,792,594 - 59,793,678)(59,657,892 - 59,658,577)
sequence
gaattctgttggtatcaccatggagctgctgctattggacaccagcaggg
ggagtctatatcatgttctatagacttgaagattttcagtgaaaagttta
aaaaattaatattcattgatgctcaaaagttttttaaaaattaatacttg
ttgatgttcatttatttgttttgagatagggtctttactgtatagacctg
gcttggccagggtttttgtttggttttgttcttttgctttctttgttttt
gtttttcaagacagagtttctccatgtagctctggctatcctggaattca
ctctgtagacaagggtggcgtcaaatttacaaggatatgcctgtctgtgt
atccagggtgctgggaccattgccatctggctagcctggaactctcacac
gtttgaatgttttgcctgtattgcctccatgcatgcattgcccttggagg
ctagacaatctccactcccctagacgtatgggtgctggcaatcaaacctc
ggtcttctgaaatagcaaccgcagctcttgattgctgagtcatctctgca
gctcctcaataaaaattttaaatcttcattgtattttaccacctttagta
taacatctctacttctctgttgtttgtgtgcatagaaattagatggaggt
tgattatcaaatgccttggttatcttaaatagtaacggaaagaaacatga
ttttctttttttacattttaaagtatacattttattttatttttattttt
atttattcattttacatacagattatggcttcctcccctcctcttctccc
atttcctctctttcatatcccctcccccatatctccacagaagaggggag
ggaaatcttatggatatcgacccaccttggcatatcaagctgcagtaaga
ctaggcacatctccttctactgaaggctagacaaggcagcccaattagtt
ggacagggttccaacagcagtcaggtaacagtcagagacagctcctcctc
cggctgttaggagtcccacatgagacaaagctgccacaactgttacacac
aggtgcaagaaggcctagcttgtcccaggcatgcatgctct
gaattcattatgtaaagcattacaaataagcatgtattaaagcagttaca
tatgatgatggcatattgttgaacaccccaagaaagataatttgcatgga
agatgattattcagtagggctttaatttacaagaaccactccgtcgttta
attgagcccctttccacacaccgcctcgcttcagtgggctgcatttgctg
ctgcacatgtacagtgccatcagggtggttaaaattccattcagtttagc
tgcaaggtaaaacaacagctgaatgccatgccataaaagtatgtattatt
aaacatcccaagattggttttggaatcagttttctattggctggtttgta
ctgtaaagctgatagtctgatttttttctaataagatttttatataagat
tatttgtctcttttggtcactagttaaattatatggttcaattttaaaaa
tcttcagttttatatggccatttatctgtattatgctattgtgaagtgat
caaaaatagccagtattcatagttactacaaaaagaaaactattcagtaa
taaaaaacacacggaaataaacctttcaacaattagctgacttgtgatta
aaatgcccagaaagataatatattgtaaagttttaaaaatatatttttta
tttgatttattttcttggtgtgtgtgtgtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59792594_59793678
seq2: B6Ng01-250J01.b_47_1137 (reverse)

seq1  AGAGCATGCATGCCTGGGACAAGCCTAGGCCTTC-TGCACC--TGTGTAA  47
      ||||||||||||||||||||||| |||||||||| ||||||  |||||||
seq2  AGAGCATGCATGCCTGGGACAAG-CTAGGCCTTCTTGCACCTGTGTGTAA  49

seq1  CAGTTGT-GCAGCTTTGTCTTCATGTGGGACTCCTAACAGCCGGAGGAGG  96
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGTTGTGGCAGCTTTGTC-TCATGTGGGACTCCTAACAGCCGGAGGAGG  98

seq1  AGCTGTCTCTGACTGTTACCTGACTGCTGTTGG-ACCCTGTCC-ACTAAT  144
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  AGCTGTCTCTGACTGTTACCTGACTGCTGTTGGAACCCTGTCCAACTAAT  148

seq1  TGGGCTGCCTTGTCTAGCC-TCAGTAGGAGGAGATGTGCCTAGTCTTACT  193
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TGGGCTGCCTTGTCTAGCCTTCAGTAGAAGGAGATGTGCCTAGTCTTACT  198

seq1  GCAGCTTGATATGCCAAGGTGGGTCGATATCCATAAGA-TTCCCTCCCCT  242
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCAGCTTGATATGCCAAGGTGGGTCGATATCCATAAGATTTCCCTCCCCT  248

seq1  CTTCTGTGGAGATATGGGGGAGGGGATATGAAAGAGAGGAAATGGGAGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGAGATATGGGGGAGGGGATATGAAAGAGAGGAAATGGGAGAA  298

seq1  GAGGAGGGGAGGAAGCCATAATCTGTATGTAAAATGAATAAATAAAAATA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGAGGAAGCCATAATCTGTATGTAAAATGAATAAATAAAAATA  348

seq1  AAAATAAAATAAAATGTATACTTTAAAATGTAAAAAAAGAAAATCATGTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATAAAATGTATACTTTAAAATGTAAAAAAAGAAAATCATGTT  398

seq1  TCTTTCCGTTACTATTTAAGATAACCAAGGCATTTGATAATCAACCTCCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCGTTACTATTTAAGATAACCAAGGCATTTGATAATCAACCTCCA  448

seq1  TCTAATTTCTATGCACACAAACAACAGAGAAGTAGAGATGTTATACTAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTCTATGCACACAAACAACAGAGAAGTAGAGATGTTATACTAAA  498

seq1  GGTGGTAAAATACAATGAAGATTTAAAATTTTTATTGAGGAGCTGCAGAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAAAATACAATGAAGATTTAAAATTTTTATTGAGGAGCTGCAGAG  548

seq1  ATGACTCAGCAATCAAGAGCTGCGGTTGCTATTTCAGAAGACCGAGGTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAGCAATCAAGAGCTGCGGTTGCTATTTCAGAAGACCGAGGTTT  598

seq1  GATTGCCAGCACCCATACGTCTAGGGGAGTGGAGATTGTCTAGCCTCCAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAGCACCCATACGTCTAGGGGAGTGGAGATTGTCTAGCCTCCAA  648

seq1  GGGCAATGCATGCATGGAGGCAATACAGGCAAAACATTCAAACGTGTGAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGCATGCATGGAGGCAATACAGGCAAAACATTCAAACGTGTGAG  698

seq1  AGTTCCAGGCTAGCCAGATGGCAATGGTCCCAGCACCCTGGATACACAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGCTAGCCAGATGGCAATGGTCCCAGCACCCTGGATACACAGA  748

seq1  CAGGCATATCCTTGTAAATTTGACGCCACCCTTGTCTACAGAGTGAATTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATATCCTTGTAAATTTGACGCCACCCTTGTCTACAGAGTGAATTC  798

seq1  CAGGATAGCCAGAGCTACATGGAGAAACTCTGTCTTGAAAAACAAAAACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGCCAGAGCTACATGGAGAAACTCTGTCTTGAAAAACAAAAACA  848

seq1  AAGAAAGCAAAAGAACAAAACCAAACAAAAACCCTGGCCAAGCCAGGTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCAAAAGAACAAAACCAAACAAAAACCCTGGCCAAGCCAGGTCT  898

seq1  ATACAGTAAAGACCCTATCTCAAAACAAATAAATGAACATCAACAAGTAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAAAGACCCTATCTCAAAACAAATAAATGAACATCAACAAGTAT  948

seq1  TAATTTTTAAAAAACTTTTGAGCATCAATGAATATTAATTTTTTAAACTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAAAAAACTTTTGAGCATCAATGAATATTAATTTTTTAAACTT  998

seq1  TTCACTGAAAATCTTCAAGTCTATAGAACATGATATAGACTCCCCCTGCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAAAATCTTCAAGTCTATAGAACATGATATAGACTCCCCCTGCT  1048

seq1  GGTGTCCAATAGCAGCAGCTCCATGGTGATACCAACAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCAATAGCAGCAGCTCCATGGTGATACCAACAGAATTC  1091

seq1: chr4_59657892_59658577
seq2: B6Ng01-250J01.g_70_755

seq1  GAATTCATTATGTAAAGCATTACAAATAAGCATGTATTAAAGCAGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTAAAGCATTACAAATAAGCATGTATTAAAGCAGTTACA  50

seq1  TATGATGATGGCATATTGTTGAACACCCCAAGAAAGATAATTTGCATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGATGGCATATTGTTGAACACCCCAAGAAAGATAATTTGCATGGA  100

seq1  AGATGATTATTCAGTAGGGCTTTAATTTACAAGAACCACTCCGTCGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTATTCAGTAGGGCTTTAATTTACAAGAACCACTCCGTCGTTTA  150

seq1  ATTGAGCCCCTTTCCACACACCGCCTCGCTTCAGTGGGCTGCATTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCCCCTTTCCACACACCGCCTCGCTTCAGTGGGCTGCATTTGCTG  200

seq1  CTGCACATGTACAGTGCCATCAGGGTGGTTAAAATTCCATTCAGTTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACATGTACAGTGCCATCAGGGTGGTTAAAATTCCATTCAGTTTAGC  250

seq1  TGCAAGGTAAAACAACAGCTGAATGCCATGCCATAAAAGTATGTATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTAAAACAACAGCTGAATGCCATGCCATAAAAGTATGTATTATT  300

seq1  AAACATCCCAAGATTGGTTTTGGAATCAGTTTTCTATTGGCTGGTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCCAAGATTGGTTTTGGAATCAGTTTTCTATTGGCTGGTTTGTA  350

seq1  CTGTAAAGCTGATAGTCTGATTTTTTTCTAATAAGATTTTTATATAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGCTGATAGTCTGATTTTTTTCTAATAAGATTTTTATATAAGAT  400

seq1  TATTTGTCTCTTTTGGTCACTAGTTAAATTATATGGTTCAATTTTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCTCTTTTGGTCACTAGTTAAATTATATGGTTCAATTTTAAAAA  450

seq1  TCTTCAGTTTTATATGGCCATTTATCTGTATTATGCTATTGTGAAGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTTTTATATGGCCATTTATCTGTATTATGCTATTGTGAAGTGAT  500

seq1  CAAAAATAGCCAGTATTCATAGTTACTACAAAAAGAAAACTATTCAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAGCCAGTATTCATAGTTACTACAAAAAGAAAACTATTCAGTAA  550

seq1  TAAAAAACACACGGAAATAAACCTTTCAACAATTAGCTGACTTGTGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACACACGGAAATAAACCTTTCAACAATTAGCTGACTTGTGATTA  600

seq1  AAATGCCCAGAAAGATAATATATTGTAAAGTTTTAAAAATATATTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCAGAAAGATAATATATTGTAAAGTTTTAAAAATATATTTTTTA  650

seq1  TTTGATTTATTTTCTTGGTGTGTGTGTGTGGGGGGG  686
      ||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTATTTTCTTGGTGTGTGTGTGTGGGGGGG  686