BAC Information

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BAC

Clone NameB6Ng01-251G09
Chromosome4 (Build37)
Map Location 43,262,427 - 43,452,242
singlet/doubletdoublet
Overlap geneUnc13b, 4930417M19Rik, Rusc2, 4833436C18Rik
Upstream geneLOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik
Downstream geneTesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251G09.bB6Ng01-251G09.g
ACCGA058669GA058670
length1,126921
definitionB6Ng01-251G09.b B6Ng01-251G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,262,427 - 43,263,558)(43,451,327 - 43,452,242)
sequence
gaattcctacacacctgttctgagccagtgagtatcaccctacttggctc
tgtctggttggggattggtctgtccatctaacagtctctctctttcctat
ctctgtatgtttgcagtgccacctcttccaactgtccgtccatctgtccc
tctgtcccttgtatctgtctgggtaactgtttctggagacaggtgtggaa
acataagggggggccctatacaggatgggatagcctccccagagagaaag
gcttctgggactgtaactgttaggggagccccaggggacccagagactgt
gtgtgcatgtgcccgtccacaatgaaaaaaagctggcctcttaaggccca
cccctgctctttctcctgcagcttatctatcctgagcctgtccttcagcc
tcaaccctcctcagggattcaatgccttgtctgtaccttctgggcattct
gtcctttgggttcatcttagctaatatggtccccctctccgtcatttatt
ctcccattagtccctgggccccttttctccagactcagtctagtcctgtt
ccctaggactcaactcctcttcattatgtcttgtgagaactaggtacctt
gggataaataaaaccaaatagctcttgccttgatgtttaccatgtttttt
tccatctctcaggtttcctcaggagttgaacgtaggaaaagtcagtgcag
aagtgatgtggcatctgtttgctcaagacatgaaatatgcactggagggt
aagggtctgccagactccatctacctcataagctctttctttcctttacc
acacaacttcaagttcttggtaaacagtatagtaagcaagtagagggctt
ctagccatggaggcaggtaagctatgggaggcataggacagacaaagctg
tagcctaaggagccatgtaaggacagtggtgtgcaggtgtgggtttctcc
ttctagcttataacaagtacctatgcaagggccttttccagccagaaaag
cagctttacccaatggtgaagggtttctgaattagtggctttgcttcaag
agttatctttaagttggaagaacagagagctaatactagaagatgtcatt
atttcctaaattctgcctggctttct
gaattcttagggaaagacacatgtaggatgtgagtggcaccatccgagtc
tggggcctcagggatcaagggaaagcctactgcatggggatctctctctc
tctctctctctctctctctctctctctctctcatttccatcaggtacaat
gctgtggtgggaactgcacagttgcacctcctcaccagacagacagaaaa
cactgaaacccggagccagaattaatcctagagacgggatttcctcgggg
cttggtttttgacaaaaactaacccagtttccatgtaaactatttgtcat
ccagagatacaattcataggaaaagctggataaatgatatcagtttcaga
taccgttggtttcctagcctggaaatgctgccatgctcaggagttggccg
ctcaagtggcacctgttttaccttggtcactgggaacctccccaagttga
ccaggctcttttgacatgggcttcgctatggtgtgcatgttaccttggac
atacatgccaaattttaattgccatttaaactgctattgagggggaggga
cagacacttgagagaagataggaacgattagctctcagtggtactgccct
cactaatgtcctgatgctgtcatctgaggacgggttctccatgaaaggac
agatccattctgagtgtccccatctcgtttcctgtgttctcactgtccag
catgttagagagcagtggcgtgtccctgccagatgacgacaccatgttct
tggaaatcccaatgtcttagtagggttttactgcttggagcagataccat
gaccaaggcaactctaataagaacaacatctaaattggaagcttgcttac
tggtttagaggttcatttcaattaatcatcaagggcggaaacatggcatc
ttccaggcaagtcatggtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_43262427_43263558
seq2: B6Ng01-251G09.b_44_1169

seq1  GAATTCCTACACACCTGTTCTGAGCCAGTGAGTATCACCCTACTTGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACACACCTGTTCTGAGCCAGTGAGTATCACCCTACTTGGCTC  50

seq1  TGTCTGGTTGGGGATTGGTCTGTCCATCTAACAGTCTCTCTCTTTCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTTGGGGATTGGTCTGTCCATCTAACAGTCTCTCTCTTTCCTAT  100

seq1  CTCTGTATGTTTGCAGTGCCACCTCTTCCAACTGTCCGTCCATCTGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATGTTTGCAGTGCCACCTCTTCCAACTGTCCGTCCATCTGTCCC  150

seq1  TCTGTCCCTTGTATCTGTCTGGGTAACTGTTTCTGGAGACAGGTGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTTGTATCTGTCTGGGTAACTGTTTCTGGAGACAGGTGTGGAA  200

seq1  ACATAAGGGGGGGCCCTATACAGGATGGGATAGCCTCCCCAGAGAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGGGGGGCCCTATACAGGATGGGATAGCCTCCCCAGAGAGAAAG  250

seq1  GCTTCTGGGACTGTAACTGTTAGGGGAGCCCCAGGGGACCCAGAGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGGACTGTAACTGTTAGGGGAGCCCCAGGGGACCCAGAGACTGT  300

seq1  GTGTGCATGTGCCCGTCCACAATGAAAAAAAGCTGGCCTCTTAAGGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGTGCCCGTCCACAATGAAAAAAAGCTGGCCTCTTAAGGCCCA  350

seq1  CCCCTGCTCTTTCTCCTGCAGCTTATCTATCCTGAGCCTGTCCTTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTCTTTCTCCTGCAGCTTATCTATCCTGAGCCTGTCCTTCAGCC  400

seq1  TCAACCCTCCTCAGGGATTCAATGCCTTGTCTGTACCTTCTGGGCATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTCCTCAGGGATTCAATGCCTTGTCTGTACCTTCTGGGCATTCT  450

seq1  GTCCTTTGGGTTCATCTTAGCTAATATGGTCCCCCTCTCCGTCATTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGGGTTCATCTTAGCTAATATGGTCCCCCTCTCCGTCATTTATT  500

seq1  CTCCCATTAGTCCCTGGGCCCCTTTTCTCCAGACTCAGTCTAGTCCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTAGTCCCTGGGCCCCTTTTCTCCAGACTCAGTCTAGTCCTGTT  550

seq1  CCCTAGGACTCAACTCCTCTTCATTATGTCTTGTGAGAACTAGGTACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGACTCAACTCCTCTTCATTATGTCTTGTGAGAACTAGGTACCTT  600

seq1  GGGATAAATAAAACCAAATAGCTCTTGCCTTGATGTTTACCATGTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAATAAAACCAAATAGCTCTTGCCTTGATGTTTACCATGTTTTTT  650

seq1  TCCATCTCTCAGGTTTCCTCAGGAGTTGAACGTAGGAAAAGTCAGTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCTCAGGTTTCCTCAGGAGTTGAACGTAGGAAAAGTCAGTGCAG  700

seq1  AAGTGATGTGGCATCTGTTTGCTCAAGACATGAAATATGCACTGGAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATGTGGCATCTGTTTGCTCAAGACATGAAATATGCACTGGAGGGT  750

seq1  AAGGGTCTGCCAGACTCCATCTACCTCATAAGCTCTTTCTTTCCTTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTGCCAGACTCCATCTACCTCATAAGCTCTTTCTTTCCTTTACC  800

seq1  ACACAACTTCAAGTTCTTGGTAAACAGTATAGTAAGCAAGTAGAGGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTTCAAGTTCTTGGTAAACAGTATAGTAAGCAAGTAGAGGGCTT  850

seq1  CTAGCCATGGAGGCAGGTAAGCTATGGGAGGCATAGGACAGACAAAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCATGGAGGCAGGTAAGCTATGGGAGGCATAGGACAGACAAAGCTG  900

seq1  TAGCCTAAGGAGCCATGTAAGGACAGTGGGTGTGCAGGTGTGGGTTTCTC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAGCCTAAGGAGCCATGTAAGGACAGT-GGTGTGCAGGTGTGGGTTTCTC  949

seq1  CTTCTAGCTTTATAACAAGTACCTATGC-AGGGCC-TTTCCAGCCCAGAA  998
      |||||||| ||||||||||||||||||| |||||| |||||||||   ||
seq2  CTTCTAGC-TTATAACAAGTACCTATGCAAGGGCCTTTTCCAGCCAGAAA  998

seq1  AGCAGCTTTACCC-ATGGTGAAGGGTTTCTGAA-TAGTGGC-TTGCTTCC  1045
      ||||||||||||| ||||||||||||||||||| ||||||| |||||| |
seq2  AGCAGCTTTACCCAATGGTGAAGGGTTTCTGAATTAGTGGCTTTGCTT-C  1047

seq1  AAGAGTTATCTTTAAAGTTTGAAGAACAAGAGAAGCTTAAATACTTAGAG  1095
      ||||||||||||| ||||| ||||||| |||| ||||  ||||||   ||
seq2  AAGAGTTATCTTT-AAGTTGGAAGAAC-AGAG-AGCT--AATACTAGAAG  1092

seq1  ATGTCATTATTTTCTTATATTTCTGGCCTGGCTTTCT  1132
      |||||||||||| ||   | |||| ||||||||||||
seq2  ATGTCATTATTTCCT--AAATTCT-GCCTGGCTTTCT  1126

seq1: chr4_43451327_43452242
seq2: B6Ng01-251G09.g_67_987 (reverse)

seq1  TGCACCATG-CCTGCCTGGATGCTGCCATGTTCCCG-CCTTGATGA-TAA  47
      ||||||||| | |||||||| | ||||||||| ||| ||||||||| |||
seq2  TGCACCATGACTTGCCTGGAAGATGCCATGTTTCCGCCCTTGATGATTAA  50

seq1  TAG-AATGAACCTCTAAACCTGTAAGCGAGC-TCCAA-TTAAATGTTGTT  94
      | | |||||||||||||||| |||||| ||| ||||| ||| ||||||||
seq2  TTGAAATGAACCTCTAAACCAGTAAGCAAGCTTCCAATTTAGATGTTGTT  100

seq1  CTTATAAGAGTTGCCTTGGTCATGGTATCTGCTCACAGCAGTAAAACCCT  144
      ||||| ||||||||||||||||||||||||||||  ||||||||||||||
seq2  CTTATTAGAGTTGCCTTGGTCATGGTATCTGCTCCAAGCAGTAAAACCCT  150

seq1  AACTAAGACATTGGGAATTCCAAGAACATGGTGTCGTCATCTGGCAGGGA  194
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  -ACTAAGACATTGGGATTTCCAAGAACATGGTGTCGTCATCTGGCAGGGA  199

seq1  CACGCCACTGCTCTCTAACATGCTGGACAGTGAGAACACAGGAAACGAGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCACTGCTCTCTAACATGCTGGACAGTGAGAACACAGGAAACGAGA  249

seq1  TGGGGACACTCAGAATGGATCTGTCCTTTCATGGAGAACCCGTCCTCAGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACACTCAGAATGGATCTGTCCTTTCATGGAGAACCCGTCCTCAGA  299

seq1  TGACAGCATCAGGACATTAGTGAGGGCAGTACCACTGAGAGCTAATCGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCATCAGGACATTAGTGAGGGCAGTACCACTGAGAGCTAATCGTT  349

seq1  CCTATCTTCTCTCAAGTGTCTGTCCCTCCCCCTCAATAGCAGTTTAAATG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTCTCTCAAGTGTCTGTCCCTCCCCCTCAATAGCAGTTTAAATG  399

seq1  GCAATTAAAATTTGGCATGTATGTCCAAGGTAACATGCACACCATAGCGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAAAATTTGGCATGTATGTCCAAGGTAACATGCACACCATAGCGA  449

seq1  AGCCCATGTCAAAAGAGCCTGGTCAACTTGGGGAGGTTCCCAGTGACCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGTCAAAAGAGCCTGGTCAACTTGGGGAGGTTCCCAGTGACCAA  499

seq1  GGTAAAACAGGTGCCACTTGAGCGGCCAACTCCTGAGCATGGCAGCATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAACAGGTGCCACTTGAGCGGCCAACTCCTGAGCATGGCAGCATTT  549

seq1  CCAGGCTAGGAAACCAACGGTATCTGAAACTGATATCATTTATCCAGCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTAGGAAACCAACGGTATCTGAAACTGATATCATTTATCCAGCTT  599

seq1  TTCCTATGAATTGTATCTCTGGATGACAAATAGTTTACATGGAAACTGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGAATTGTATCTCTGGATGACAAATAGTTTACATGGAAACTGGG  649

seq1  TTAGTTTTTGTCAAAAACCAAGCCCCGAGGAAATCCCATCTCTAGGATTA  694
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAGTTTTTGTCAAAAACCAAGCCCCGAGGAAATCCCGTCTCTAGGATTA  699

seq1  ATTCTGGCTCCGGGTTTCAGTGTTTTCTGTCTGTCTGGTGAGGAGGTGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGCTCCGGGTTTCAGTGTTTTCTGTCTGTCTGGTGAGGAGGTGCA  749

seq1  ACTGTGCAGTTCCCACCACAGCATTGTACCTGATGGAAATGAGAGAGAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAGTTCCCACCACAGCATTGTACCTGATGGAAATGAGAGAGAGA  799

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCCCATGCAGTAGGCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCCCATGCAGTAGGCTT  849

seq1  TCCCTTGATCCCTGAGGCCCCAGACTCGGATGGTGCCACTCACATCCTAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGATCCCTGAGGCCCCAGACTCGGATGGTGCCACTCACATCCTAC  899

seq1  ATGTGTCTTTCCCTAAGAATTC  916
      ||||||||||||||||||||||
seq2  ATGTGTCTTTCCCTAAGAATTC  921