BAC Information

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BAC

Clone NameB6Ng01-251N05
Chromosome4 (Build37)
Map Location 103,072,747 - 103,209,407
singlet/doubletdoublet
Overlap genenone
Upstream genePde4b, Sgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1
Downstream geneLOC665451, LOC100039940, EG665460, LOC622315, Dab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251N05.bB6Ng01-251N05.g
ACCGA058983GA058984
length1,1601,139
definitionB6Ng01-251N05.b B6Ng01-251N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,208,257 - 103,209,407)(103,072,747 - 103,073,869)
sequence
gaattcagctgctttagcctgagcctcattagaaaaacactcttccatat
agtcactgcctaaagagagactgggaacagcttggatagtcagagtgggg
ggcaggcacagctgctggcaacacagacgtcacctttctcctgtgccggg
accaccacaaatgtagtgattagcctggtctcactcctcctgagcctcaa
caaaacctccaaatcattctctacctgcatggcaggcagccacccccagt
gggattggcatgcagaagctggccacacatggtcttcttccagtattgag
cttccagtttcaacacttgaggagaaagcctgggcctcaggggtagcctc
aaatagcagggcagactgttgcactgcaaccagaactcctgcttgcccaa
ggctatttatcccgtgggggctgcatgctcttaggatgctatcacgctgt
aaaatcagagctagtgtatcttcagattttatttttctgccctcgttatt
cttagctgttgagatgtaagaatcggccaccaaccctggctgactttgga
ggactaagccagggattctatatctccacaaaatgatgagattgacattt
atggaaattagcccagtataggaatgagcaccataatctatggagccaga
aatacactaagtatactgagctatgatgtgccaacatctattcatgagac
ttgagaaaatctcataaattcttaggccctcagagttagatgatgatgat
gatgatgacagagagatgacatcatactgacttcataggaacattctaaa
aattaaactgatggtgtacgttaagggcttatcacaaccatgtggaaagc
gcttcatgatactagctgctatgattagtttgatacctggcttacagcaa
atggggccaaatactagtttcctcttgtttcaacttctttttaatatcct
ctgatcatttattcttaaaaccaaagtaaaggatggtgtcctgttgatct
aaaggaagtaatgggcctgatgtcagaagcacatgaacccccagaagttc
agcagcgcggctctgcgctcccttctgaaagaatagctggctgtgactaa
aggaaattctgcttccctcaaggagtcctcaagaagaacaaatgtaatca
gtctaattac
gaattcatagtttctctcctctataaaatgcttgctctctcagtgaagat
tctggagaaatgcacatgctttttagaatggtactaggcagtgagaaaac
aagtggaaaggacactggtcctccagaggagggtagtgagaaggtaacaa
tgggtgtgcttcaggatcatgggtcaggttgttgaggaagcataggggag
gctgaacgctctgttttcaaggtggaagaggaagggcaaaaccttcattt
tatgaaaggtagggagagcttgcttttgccatagccctggcagaagcagc
tcacaggtttcacttgtgtgacagcatttgtcttgttctcagaagggagg
aaagctcttgactacacaaactgagtaaaagcaactgtcttacctgcatt
cataactgcaggacccaggagcagcctgtgacagggcgctatacacagct
tcccaccagtacctggtaaggataaggtaccctcaaagcatggggctgtg
gcctagaggccagccttctttctgctgtccttgagtgtccttccttccaa
gatccaccttgccagccccttcatctgttcccaaagctattctttgcagt
tgccccacttcctattcaaggagaactttgagtctgggtcagcccctcct
gtaggcatctggtacagtctcctgaattctctgggctttggaatatgtga
tgatgatgatgattgatgttgttgacatacaaaataatggcattctttac
gagatttttagactttgttcttttcttcctcatcaccactgagttcctcc
atcccacctcctttttctcctccaaacagtcagttcctcttctgctttgt
cccccctcccctctctctaaatcctgcatatgagagaaaaatgtgacatt
taaactttttattttctaaaggttttgtccaagtaaatattgttaaagtt
gaacaacatctccatgctcatccctcgtttttgttccttcttctgtggct
ccctttgtcctcatagaataggttccccttctacattttattgcctactc
accattacatgatttatgtattctataatgaagtctggaatataaataga
aatctttctggagaatcacttagcctcaccatatgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_103208257_103209407
seq2: B6Ng01-251N05.b_47_1206 (reverse)

seq1  GTAATTAGACTGAATACATT--GTCTCCTGGA-GACTCC-TGAGGG-AGC  45
      ||||||||||||| ||||||   ||| || || |||||| |||||| |||
seq2  GTAATTAGACTGATTACATTTGTTCTTCTTGAGGACTCCTTGAGGGAAGC  50

seq1  AGA--TTCCCTTAGTCACAGGCCAGCTAT--CTTCAG-AGGGAGCCGCAG  90
      |||  |||| ||||||||| |||||||||   ||||| |||||| |||||
seq2  AGAATTTCCTTTAGTCACA-GCCAGCTATTCTTTCAGAAGGGAG-CGCAG  98

seq1  AGGCCGCGCTGCTGAACTTCTGGGGG-TCATGTGC-TCTGACATCAGGCC  138
      | |||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  A-GCCGCGCTGCTGAACTTCTGGGGGTTCATGTGCTTCTGACATCAGGCC  147

seq1  CATTACTTCCTTTAGATCAACAGGACACCATCCTTTACTTTGGTTTTAAG  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTCCTTTAGATCAACAGGACACCATCCTTTACTTTGGTTTTAAG  197

seq1  AATAAATGATCAGAGGATATTAAAAAGAAGTTGAAACAAGAGGAAACTAG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGATCAGAGGATATTAAAAAGAAGTTGAAACAAGAGGAAACTAG  247

seq1  TATTTGGCCCCATTTGCTGTAAGCCAGGTATCAAACTAATCATAGCAGCT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCCCCATTTGCTGTAAGCCAGGTATCAAACTAATCATAGCAGCT  297

seq1  AGTATCATGAAGCGCTTTCCACATGGTTGTGATAAGCCCTTAACGTACAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATGAAGCGCTTTCCACATGGTTGTGATAAGCCCTTAACGTACAC  347

seq1  CATCAGTTTAATTTTTAGAATGTTCCTATGAAGTCAGTATGATGTCATCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTTAATTTTTAGAATGTTCCTATGAAGTCAGTATGATGTCATCT  397

seq1  CTCTGTCATCATCATCATCATCATCTAACTCTGAGGGCCTAAGAATTTAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCATCATCATCATCATCATCTAACTCTGAGGGCCTAAGAATTTAT  447

seq1  GAGATTTTCTCAAGTCTCATGAATAGATGTTGGCACATCATAGCTCAGTA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTCTCAAGTCTCATGAATAGATGTTGGCACATCATAGCTCAGTA  497

seq1  TACTTAGTGTATTTCTGGCTCCATAGATTATGGTGCTCATTCCTATACTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTGTATTTCTGGCTCCATAGATTATGGTGCTCATTCCTATACTG  547

seq1  GGCTAATTTCCATAAATGTCAATCTCATCATTTTGTGGAGATATAGAATC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTTCCATAAATGTCAATCTCATCATTTTGTGGAGATATAGAATC  597

seq1  CCTGGCTTAGTCCTCCAAAGTCAGCCAGGGTTGGTGGCCGATTCTTACAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTAGTCCTCCAAAGTCAGCCAGGGTTGGTGGCCGATTCTTACAT  647

seq1  CTCAACAGCTAAGAATAACGAGGGCAGAAAAATAAAATCTGAAGATACAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGCTAAGAATAACGAGGGCAGAAAAATAAAATCTGAAGATACAC  697

seq1  TAGCTCTGATTTTACAGCGTGATAGCATCCTAAGAGCATGCAGCCCCCAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGATTTTACAGCGTGATAGCATCCTAAGAGCATGCAGCCCCCAC  747

seq1  GGGATAAATAGCCTTGGGCAAGCAGGAGTTCTGGTTGCAGTGCAACAGTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAATAGCCTTGGGCAAGCAGGAGTTCTGGTTGCAGTGCAACAGTC  797

seq1  TGCCCTGCTATTTGAGGCTACCCCTGAGGCCCAGGCTTTCTCCTCAAGTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGCTATTTGAGGCTACCCCTGAGGCCCAGGCTTTCTCCTCAAGTG  847

seq1  TTGAAACTGGAAGCTCAATACTGGAAGAAGACCATGTGTGGCCAGCTTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTGGAAGCTCAATACTGGAAGAAGACCATGTGTGGCCAGCTTCT  897

seq1  GCATGCCAATCCCACTGGGGGTGGCTGCCTGCCATGCAGGTAGAGAATGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCAATCCCACTGGGGGTGGCTGCCTGCCATGCAGGTAGAGAATGA  947

seq1  TTTGGAGGTTTTGTTGAGGCTCAGGAGGAGTGAGACCAGGCTAATCACTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGTTTTGTTGAGGCTCAGGAGGAGTGAGACCAGGCTAATCACTA  997

seq1  CATTTGTGGTGGTCCCGGCACAGGAGAAAGGTGACGTCTGTGTTGCCAGC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGGTGGTCCCGGCACAGGAGAAAGGTGACGTCTGTGTTGCCAGC  1047

seq1  AGCTGTGCCTGCCCCCCACTCTGACTATCCAAGCTGTTCCCAGTCTCTCT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCCTGCCCCCCACTCTGACTATCCAAGCTGTTCCCAGTCTCTCT  1097

seq1  TTAGGCAGTGACTATATGGAAGAGTGTTTTTCTAATGAGGCTCAGGCTAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAGTGACTATATGGAAGAGTGTTTTTCTAATGAGGCTCAGGCTAA  1147

seq1  AGCAGCTGAATTC  1151
      |||||||||||||
seq2  AGCAGCTGAATTC  1160

seq1: chr4_103072747_103073869
seq2: B6Ng01-251N05.g_65_1203

seq1  GAATTCATAGTTTCTCTCCTCTATAAAATGCTTGCTCTCTCAGTGAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTTCTCTCCTCTATAAAATGCTTGCTCTCTCAGTGAAGAT  50

seq1  TCTGGAGAAATGCACATGCTTTTTAGAATGGTACTAGGCAGTGAGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAAATGCACATGCTTTTTAGAATGGTACTAGGCAGTGAGAAAAC  100

seq1  AAGTGGAAAGGACACTGGTCCTCCAGAGGAGGGTAGTGAGAAGGTAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAAGGACACTGGTCCTCCAGAGGAGGGTAGTGAGAAGGTAACAA  150

seq1  TGGGTGTGCTTCAGGATCATGGGTCAGGTTGTTGAGGAAGCATAGGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGCTTCAGGATCATGGGTCAGGTTGTTGAGGAAGCATAGGGGAG  200

seq1  GCTGAACGCTCTGTTTTCAAGGTGGAAGAGGAAGGGCAAAACCTTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACGCTCTGTTTTCAAGGTGGAAGAGGAAGGGCAAAACCTTCATTT  250

seq1  TATGAAAGGTAGGGAGAGCTTGCTTTTGCCATAGCCCTGGCAGAAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGGTAGGGAGAGCTTGCTTTTGCCATAGCCCTGGCAGAAGCAGC  300

seq1  TCACAGGTTTCACTTGTGTGACAGCATTTGTCTTGTTCTCAGAAGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTTTCACTTGTGTGACAGCATTTGTCTTGTTCTCAGAAGGGAGG  350

seq1  AAAGCTCTTGACTACACAAACTGAGTAAAAGCAACTGTCTTACCTGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTTGACTACACAAACTGAGTAAAAGCAACTGTCTTACCTGCATT  400

seq1  CATAACTGCAGGACCCAGGAGCAGCCTGTGACAGGGCGCTATACACAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGCAGGACCCAGGAGCAGCCTGTGACAGGGCGCTATACACAGCT  450

seq1  TCCCACCAGTACCTGGTAAGGATAAGGTACCCTCAAAGCATGGGGCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCAGTACCTGGTAAGGATAAGGTACCCTCAAAGCATGGGGCTGTG  500

seq1  GCCTAGAGGCCAGCCTTCTTTCTGCTGTCCTTGAGTGTCCTTCCTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAGGCCAGCCTTCTTTCTGCTGTCCTTGAGTGTCCTTCCTTCCAA  550

seq1  GATCCACCTTGCCAGCCCCTTCATCTGTTCCCAAAGCTATTCTTTGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCTTGCCAGCCCCTTCATCTGTTCCCAAAGCTATTCTTTGCAGT  600

seq1  TGCCCCACTTCCTATTCAAGGAGAACTTTGAGTCTGGGTCAGCCCCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCACTTCCTATTCAAGGAGAACTTTGAGTCTGGGTCAGCCCCTCCT  650

seq1  GTAGGCATCTGGTACAGTCTCCTGAATTCTCTGGGCTTTGGAATATGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCATCTGGTACAGTCTCCTGAATTCTCTGGGCTTTGGAATATGTGA  700

seq1  TGATGATGATGATTGATGTTGTTGACATACAAAATAATGGCATTCTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGATGATTGATGTTGTTGACATACAAAATAATGGCATTCTTTAC  750

seq1  GAGATTTTTAGACTTTGTTCTTTTCTTCCTCATCACCACTGAGTTCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTAGACTTTGTTCTTTTCTTCCTCATCACCACTGAGTTCCTCC  800

seq1  ATCCCACCTCCTTTTTCTCCTCCAAACAGTCAGTTCCTCTTCTGCTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCTCCTTTTTCTCCTCCAAACAGTCAGTTCCTCTTCTGCTTTGT  850

seq1  CCCCCCTCCCCTCTCTCTAAATCCTGCATATGAGAGAAAAATGTGACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCCCCTCTCTCTAAATCCTGCATATGAGAGAAAAATGTGACATT  900

seq1  T-AACTTTTTATTTTCTAAAGGTTTTGTCCAAGTAAATATTGTT-AAGTT  948
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAACTTTTTATTTTCTAAAGGTTTTGTCCAAGTAAATATTGTTAAAGTT  950

seq1  GAAC-ACATCTCCATGCTCAT-CCTCGTTTTTGTTCCTTCTTCTTGTTGG  996
      |||| |||||||||||||||| ||||||||||||||||||||||   |||
seq2  GAACAACATCTCCATGCTCATCCCTCGTTTTTGTTCCTTCTTCT--GTGG  998

seq1  CTCCCTTTGTCCTCATAG-ATA-GTTTCCCTTCTACA-TTTATGCCCTAC  1043
      |||||||||||||||||| ||| ||| |||||||||| |||||  |||||
seq2  CTCCCTTTGTCCTCATAGAATAGGTTCCCCTTCTACATTTTATTGCCTAC  1048

seq1  TCAC--ATACATGATTTTATGTA-TCTAT-ATGAAGTCTG--ATATAAAT  1087
      ||||   ||||||| |||||||| ||||| ||||||||||  ||||||||
seq2  TCACCATTACATGA-TTTATGTATTCTATAATGAAGTCTGGAATATAAAT  1097

seq1  AG-AATCTTTCT-GAG-ATCACTTA-ACTCAC--TATGACTG  1123
      || ||||||||| ||| ||||||||  |||||  ||||||||
seq2  AGAAATCTTTCTGGAGAATCACTTAGCCTCACCATATGACTG  1139