BAC Information

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BAC

Clone NameB6Ng01-251O01
Chromosome4 (Build37)
Map Location 125,541,661 - 125,694,387
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251O01.bB6Ng01-251O01.g
ACCGA059023GA059024
length1,015969
definitionB6Ng01-251O01.b B6Ng01-251O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,693,383 - 125,694,387)(125,541,661 - 125,542,623)
sequence
gaattctgtcctctgtaagagcagcaagtgatttttttttaaaattattt
attttatgtatatgagtacactgtaaccatcctctgacacaccaggagag
ggcattgaatcccgagagggcattgaatcccattacagatgtttgtgagc
caccatgtggttgctgggcattgaactcaggacctctggaagagcagtca
gtacccttagccagtgagccatctctccagcctgcagcaaatgatcttaa
tgccttgagccatctctgaagttctcttaaggctgtttcaagatagcgga
tttcccaagttcaacaatctttcctgctttgcctctgagaggggaggaaa
cagatccagaggggatcaaatgacctgcttatgtcacacaactagaagct
ggggctctaatcaggccacaccctcacctctcttccagacccacctgact
cctgacgctggaacttgactctggttctggagtggaattggactctagct
gggaactgaggggcaggtaggatttgaaaggagagaagggtgtgcggagt
ggagggacctcgggagcaaaggcctgcgctcgcatgcgtgtgtaaagccc
tgcatcctggattaggtacaaccttgactctgtataaccttaatcagaac
ttgcggtcctgcttcctgggctcccattcatgccttttagcttctcagac
actccaaccccccaccccaacctgagttcctttgcattttcttttgaaaa
tctacttcctgttctgttgagtggcgcatctgaagcccctctgcccctca
cctgcatatctggccaggcatacctgctggtgggttccttctctgcagcc
tcaaggttcctcaggagctcagtctgtcccagttaactttaactgtcaac
tccatacagacaaaaaccactcctcccacccctccatcaccaaaggagtc
tcagttgagtaatctatcaggttgggtctatgagcatggcttgtgtggtg
ttggcgtgtgggggt
gaattcaagtgtcattcactctgtttacatcacctcctctgtgccaaagc
tccagccaccttcacatccaagaagcctgtgaagattttgatcagtttta
cctgaccaggctgagagacgccctcttcccctctatgctaagatccttta
agttgtccgcatggtctacgctgccatctaagggaagaagagacacaggg
gctgagacgtgggtaagggtccggctttcaggactgtcatccagcctgac
acaggcagtttccaggcttgctctagtcctccacctggatcaggactggt
gcacagactgcttgacacacttgatgaatgaaaacagtgggaggagaacg
gacacgtgttggggctggccgtcggaggcccagagtccacagcaggccag
ctgtgaggtcagcggtgaaaactgaggctcccgagactccttcccctcta
ctcaccatgacagagaatattctctgtaataaataagagatcaaaccagg
caggtctgtgctgcgcaggagtcaggctgctggagctaaaaaaggaaccg
cctcctcctggggactagggactgggcatggagggttagcatcctcccca
cccccccaccccacccccacacacacaccaaggtgctgatttccagtgag
cactctcctggtcctgctggtcgctcatcagagaaccccaggcgctactc
tcaggtaattaacagaaatctggtcactggcccctggcctgccctcagta
agccaggccacatactgagtacagaaatattctgtagtgtgtgccctttt
caccctagggctgtactgtgagttcacttgacctttggggctatacgttc
ccctgggacttccacagccaccactcctctcaattacttccggtcctgtc
aaagactgcagagaagtcgatgcctggaaaggtgggttggagtggccact
gggaggttagtggggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_125693383_125694387
seq2: B6Ng01-251O01.b_44_1058 (reverse)

seq1  ACCCCCACA---------CACAC-AGCCATGCTCATAGA-CCAACCTGAT  39
      |||||||||         ||||| ||||||||||||||| ||||||||||
seq2  ACCCCCACACGCCAACACCACACAAGCCATGCTCATAGACCCAACCTGAT  50

seq1  AGATTACTCAACTGAGACTCCTTTGGTGATGGAGGGGTGGGAGGGAGTGG  89
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGATTACTCAACTGAGACTCCTTTGGTGATGGAGGGGTGGGA-GGAGTGG  99

seq1  TTTTTGTCTGTATGGAGTTGACAGTTAAAGTTAACTGGGACAGACTGAGC  139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGTATGGAGTTGACAGTTAAAGTTAACTGGGACAGACTGAGC  149

seq1  TCCTGAGGAACCTTGAGGCTGCAGAGAAGGAACCCACCAGCAGGTATGCC  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGAACCTTGAGGCTGCAGAGAAGGAACCCACCAGCAGGTATGCC  199

seq1  TGGCCAGATATGCAGGTGAGGGGCAGAGGGGCTTCAGATGCGCCACTCAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGATATGCAGGTGAGGGGCAGAGGGGCTTCAGATGCGCCACTCAA  249

seq1  CAGAACAGGAAGTAGATTTTCAAAAGAAAATGCAAAGGAACTCAGGTTGG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGGAAGTAGATTTTCAAAAGAAAATGCAAAGGAACTCAGGTTGG  299

seq1  GGTGGGGGGTTGGAGTGTCTGAGAAGCTAAAAGGCATGAATGGGAGCCCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGGTTGGAGTGTCTGAGAAGCTAAAAGGCATGAATGGGAGCCCA  349

seq1  GGAAGCAGGACCGCAAGTTCTGATTAAGGTTATACAGAGTCAAGGTTGTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGACCGCAAGTTCTGATTAAGGTTATACAGAGTCAAGGTTGTA  399

seq1  CCTAATCCAGGATGCAGGGCTTTACACACGCATGCGAGCGCAGGCCTTTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCAGGATGCAGGGCTTTACACACGCATGCGAGCGCAGGCCTTTG  449

seq1  CTCCCGAGGTCCCTCCACTCCGCACACCCTTCTCTCCTTTCAAATCCTAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGAGGTCCCTCCACTCCGCACACCCTTCTCTCCTTTCAAATCCTAC  499

seq1  CTGCCCCTCAGTTCCCAGCTAGAGTCCAATTCCACTCCAGAACCAGAGTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTCAGTTCCCAGCTAGAGTCCAATTCCACTCCAGAACCAGAGTC  549

seq1  AAGTTCCAGCGTCAGGAGTCAGGTGGGTCTGGAAGAGAGGTGAGGGTGTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAGCGTCAGGAGTCAGGTGGGTCTGGAAGAGAGGTGAGGGTGTG  599

seq1  GCCTGATTAGAGCCCCAGCTTCTAGTTGTGTGACATAAGCAGGTCATTTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTAGAGCCCCAGCTTCTAGTTGTGTGACATAAGCAGGTCATTTG  649

seq1  ATCCCCTCTGGATCTGTTTCCTCCCCTCTCAGAGGCAAAGCAGGAAAGAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCTGGATCTGTTTCCTCCCCTCTCAGAGGCAAAGCAGGAAAGAT  699

seq1  TGTTGAACTTGGGAAATCCGCTATCTTGAAACAGCCTTAAGAGAACTTCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAACTTGGGAAATCCGCTATCTTGAAACAGCCTTAAGAGAACTTCA  749

seq1  GAGATGGCTCAAGGCATTAAGATCATTTGCTGCAGGCTGGAGAGATGGCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAAGGCATTAAGATCATTTGCTGCAGGCTGGAGAGATGGCT  799

seq1  CACTGGCTAAGGGTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATGCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTAAGGGTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATGCC  849

seq1  CAGCAACCACATGGTGGCTCACAAACATCTGTAATGGGATTCAATGCCCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGCTCACAAACATCTGTAATGGGATTCAATGCCCT  899

seq1  CTCGGGATTCAATGCCCTCTCCTGGTGTGTCAGAGGATGGTTACAGTGTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGATTCAATGCCCTCTCCTGGTGTGTCAGAGGATGGTTACAGTGTA  949

seq1  CTCATATACATAAAATAAATAATTTTAAAAAAAAATCACTTGCTGCTCTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATACATAAAATAAATAATTTTAAAAAAAAATCACTTGCTGCTCTT  999

seq1  ACAGAGGACAGAATTC  1005
      ||||||||||||||||
seq2  ACAGAGGACAGAATTC  1015

seq1: chr4_125541661_125542623
seq2: B6Ng01-251O01.g_67_1035

seq1  GAATTCAAGTGTCATTCACTCTGTTTACATCACCTCCTCTGTGCCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGTCATTCACTCTGTTTACATCACCTCCTCTGTGCCAAAGC  50

seq1  TCCAGCCACCTTCACATCCAAGAAGCCTGTGAAGATTTTGATCAGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCACCTTCACATCCAAGAAGCCTGTGAAGATTTTGATCAGTTTTA  100

seq1  CCTGACCAGGCTGAGAGACGCCCTCTTCCCCTCTATGCTAAGATCCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCAGGCTGAGAGACGCCCTCTTCCCCTCTATGCTAAGATCCTTTA  150

seq1  AGTTGTCCGCATGGTCTACGCTGCCATCTAAGGGAAGAAGAGACACAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCCGCATGGTCTACGCTGCCATCTAAGGGAAGAAGAGACACAGGG  200

seq1  GCTGAGACGTGGGTAAGGGTCCGGCTTTCAGGACTGTCATCCAGCCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACGTGGGTAAGGGTCCGGCTTTCAGGACTGTCATCCAGCCTGAC  250

seq1  ACAGGCAGTTTCCAGGCTTGCTCTAGTCCTCCACCTGGATCAGGACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGTTTCCAGGCTTGCTCTAGTCCTCCACCTGGATCAGGACTGGT  300

seq1  GCACAGACTGCTTGACACACTTGATGAATGAAAACAGTGGGAGGAGAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACTGCTTGACACACTTGATGAATGAAAACAGTGGGAGGAGAACG  350

seq1  GACACGTGTTGGGGCTGGCCGTCGGAGGCCCAGAGTCCACAGCAGGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTGTTGGGGCTGGCCGTCGGAGGCCCAGAGTCCACAGCAGGCCAG  400

seq1  CTGTGAGGTCAGCGGTGAAAACTGAGGCTCCCGAGACTCCTTCCCCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGTCAGCGGTGAAAACTGAGGCTCCCGAGACTCCTTCCCCTCTA  450

seq1  CTCACCATGACAGAGAATATTCTCTGTAATAAATAAGAGATCAAACCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATGACAGAGAATATTCTCTGTAATAAATAAGAGATCAAACCAGG  500

seq1  CAGGTCTGTGCTGCGCAGGAGTCAGGCTGCTGGAGCTAAAAAAGGAACCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGTGCTGCGCAGGAGTCAGGCTGCTGGAGCTAAAAAAGGAACCG  550

seq1  CCTCCTCCTGGGGACTAGGGACTGGGCATGGAGGGTTAGCATCCTCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTGGGGACTAGGGACTGGGCATGGAGGGTTAGCATCCTCCCCA  600

seq1  CCCCCCCACCCCACCCCCACACACACACCAAGGTGCTGATTTCCAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCACCCCACCCCCACACACACACCAAGGTGCTGATTTCCAGTGAG  650

seq1  CACTCTCCTGGTCCTGCTGGTCGCTCATCAGAGAACCCCAGGCGCTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCTGGTCCTGCTGGTCGCTCATCAGAGAACCCCAGGCGCTACTC  700

seq1  TCAGGTAATTAACAGAAATCTGGTCACTGGCCCCTGGCCTGCCCTCAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAATTAACAGAAATCTGGTCACTGGCCCCTGGCCTGCCCTCAGTA  750

seq1  AGCCAGGCCACATACTGAGTACAGAAATATTCTGTAGTGTGTGCCCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCCACATACTGAGTACAGAAATATTCTGTAGTGTGTGCCCTTTT  800

seq1  CACCCTAGGGCTGTACTGTGAGTTCACTTGACCTT--GGGCTATACGTTC  848
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  CACCCTAGGGCTGTACTGTGAGTTCACTTGACCTTTGGGGCTATACGTTC  850

seq1  CCCTGGGACTTCCACAGCCACCACTCCTCTCAATTACTTCCGGTCCTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGACTTCCACAGCCACCACTCCTCTCAATTACTTCCGGTCCTGTC  900

seq1  AAAGACTGCAGAGAAGTCGATGCCTGG-AAGGTGGG-TGGAGTGGCCACT  946
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  AAAGACTGCAGAGAAGTCGATGCCTGGAAAGGTGGGTTGGAGTGGCCACT  950

seq1  GGGAGG-TAGT-GGGTGAT  963
      |||||| |||| |||||||
seq2  GGGAGGTTAGTGGGGTGAT  969