BAC Information

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BAC

Clone NameB6Ng01-252H24
Chromosome4 (Build37)
Map Location 79,398,420 - 79,399,546
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252H24.bB6Ng01-252H24.g
ACCGA059478GA059479
length1,1741,116
definitionB6Ng01-252H24.b B6Ng01-252H24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggattaatattttgaggtgggtgggtgttcccatccctcatct
gggggcagtgcctatccacaggatatagtctctacaggttctattttccc
tgtcttgaatattttggttaaagttctccctcttggctcttatctgggac
tttctagtacctatccctacccccccaccccccactgttaatcacctaca
ctcaaacacttgaccctctgtacttcttccctatttcctccaatatctga
gaactgccccctcctttgtctctttgctctccatctcagatcctttttcc
cctctacttcccacagattagtctcgtccccctaatgagtagtactctaa
catccagacttcagtgtgatcttctttcttactgagtttcatatggtctg
tgagttgtattggggggtattctgagcttttttttttttttcctaatatc
aacttttcagtgaggacaaaccatgtgtgttcttttgtgactgggttacc
tcactcaggatgatatttttcaagtttcatccattgcctgtaaatttcat
gaaatcattgtttttaatagctgagtagtactccattgtataaatgcacc
acattttctgtatccattcctctcttgaaggacatcttggttctttccag
tttctggctattacaaacaaggctgctatgaacattgtggagcatatgtc
cttgttatatgttggaacatcttttgtgtatatacccaggagtggtatag
ctgggtcctcaaagaagatctatttccagttttctgaggaactgccagac
taatttccagattcatagtacccagcttgcaatacctccagcaatggagg
gagtgttcccttttctctacatcctagccagcatctgctgtcacctgagt
ttttgattcttagtcattctgacaggttgtgagatggaaatctcagggct
agtgttcatttgaattttccctgacgagtaaaggatgttgacatttctta
aaggtgtttcgcagcaattctgtatcctcagttgagaatctctgtttacc
tcagtatcccatttttgattaagggtattgtttctcatggagtcttttga
ttcctttgaatatttggaaaattaggcttctatcgatggtagggttggta
gagacattcaccaactggatggtc
gaattcacaatgaactatgcagatatttttagctttcttaatcagtttct
taaacacttaaccaaaaaaataattggcatttcacatggttattttcatg
ccctgaccctagacaatgtgtggaacaatgagagataaggaaaaccatga
ataaaagttcaagtggaaaaccatttggaaactatatttaaaaaaaaata
atagtaaaatctgtaaaactacacgattattttgttctagatagaaatag
ttgttctatgaaattaaataaactttatttaatcaaagtaatctatatca
ttaaaactgatgaagaagtagagaaacatatcatgtttatgaaccaaaca
cccaaatattacttttatgattcaataaaatccaaataactactggtgtt
tagatttagagattaacagctaatttctgggctcacattgacaagtacac
atgatatgtttttcagccaccctaaaagaaatgatcaactttctgaaata
tacttctcatcaaagtccacaggtgtgtgctagtgttcttaatagtgcca
tatattgcttatgcctacggtcagagataatttaaaaataagaatgaata
atataaggagcagagcaatccctctctgagctcaccctatatctttgaat
aaaattggcaataggctaagtataaatccataatttacagcctcagccac
atagacctggtgctaaaattatgtatgtagtctatgtgttgagtacatgt
atatatactattttgttaacataacatataaaacatattatgttcagtta
atctgtaaaaatctttgataacacttattaataatagtaaaaatgttaag
ttctgtaagagaaaaccagcactggacaacacacacacgcacacaaatag
ttctgaagaagatatattatcttcagttatttctgccctacagaagaaat
ttttagtgttactgggggaaatatctaaagaaaatatccaaataatatgg
ctttagtgtgtacaatggaattataattatatttaaatacataaattgag
cctacagtagcgagagagatatatagagcccacgttcagcaggagaacga
aatcagtgagaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79398420_79399546
seq2: B6Ng01-252H24.g_66_1181 (reverse)

seq1  CCATTTCTCACTTGATGTCCTGTCTTCCTGCTGGACGTGGGCTCTATATA  50
      ||||||||||| |||| ||  ||  |||||||| ||||||||||||||||
seq2  CCATTTCTCAC-TGATTTC--GTTCTCCTGCTGAACGTGGGCTCTATATA  47

seq1  TTCTCTCTCGCTACTGTAGGGCTCAAATTTATGTATTTAAATATAATTAT  100
       ||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  -TCTCTCTCGCTACTGTA-GGCTC-AATTTATGTATTTAAATATAATTAT  94

seq1  AAATTTCCATTGTACACACTAAAGCCAATATATTTGGATAATTTTCTTTA  150
      ||  |||||||||||||||||||||||   ||||||||| ||||||||||
seq2  AA--TTCCATTGTACACACTAAAGCCATATTATTTGGAT-ATTTTCTTTA  141

seq1  GATATTTCCCCCAGTAACACCTAAAAATTTCTTCTGTTAGGGCAGAAATA  200
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  GATATTTCCCCCAGTAACA-CTAAAAATTTCTTCTG-TAGGGCAGAAATA  189

seq1  ACTGAAGATAATATATCTTCTTCAGAACTATTTGTGTGCGTGTGTGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGATAATATATCTTCTTCAGAACTATTTGTGTGCGTGTGTGTGTT  239

seq1  GTCCAGTGCTGGTTTTCTCTTACAGAACTTAACATTTTTACTATTATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGCTGGTTTTCTCTTACAGAACTTAACATTTTTACTATTATTAA  289

seq1  TAAGTGTTATCAAAGATTTTTACAGATTAACTGAACATAATATGTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTATCAAAGATTTTTACAGATTAACTGAACATAATATGTTTTAT  339

seq1  ATGTTATGTTAACAAAATAGTATATATACATGTACTCAACACATAGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGTTAACAAAATAGTATATATACATGTACTCAACACATAGACTA  389

seq1  CATACATAATTTTAGCACCAGGTCTATGTGGCTGAGGCTGTAAATTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAATTTTAGCACCAGGTCTATGTGGCTGAGGCTGTAAATTATGG  439

seq1  ATTTATACTTAGCCTATTGCCAATTTTATTCAAAGATATAGGGTGAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACTTAGCCTATTGCCAATTTTATTCAAAGATATAGGGTGAGCTC  489

seq1  AGAGAGGGATTGCTCTGCTCCTTATATTATTCATTCTTATTTTTAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGATTGCTCTGCTCCTTATATTATTCATTCTTATTTTTAAATTA  539

seq1  TCTCTGACCGTAGGCATAAGCAATATATGGCACTATTAAGAACACTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGACCGTAGGCATAAGCAATATATGGCACTATTAAGAACACTAGCA  589

seq1  CACACCTGTGGACTTTGATGAGAAGTATATTTCAGAAAGTTGATCATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTGGACTTTGATGAGAAGTATATTTCAGAAAGTTGATCATTTC  639

seq1  TTTTAGGGTGGCTGAAAAACATATCATGTGTACTTGTCAATGTGAGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGTGGCTGAAAAACATATCATGTGTACTTGTCAATGTGAGCCCA  689

seq1  GAAATTAGCTGTTAATCTCTAAATCTAAACACCAGTAGTTATTTGGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGCTGTTAATCTCTAAATCTAAACACCAGTAGTTATTTGGATTT  739

seq1  TATTGAATCATAAAAGTAATATTTGGGTGTTTGGTTCATAAACATGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATCATAAAAGTAATATTTGGGTGTTTGGTTCATAAACATGATAT  789

seq1  GTTTCTCTACTTCTTCATCAGTTTTAATGATATAGATTACTTTGATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTACTTCTTCATCAGTTTTAATGATATAGATTACTTTGATTAAA  839

seq1  TAAAGTTTATTTAATTTCATAGAACAACTATTTCTATCTAGAACAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTATTTAATTTCATAGAACAACTATTTCTATCTAGAACAAAATA  889

seq1  ATCGTGTAGTTTTACAGATTTTACTATTATTTTTTTTTAAATATAGTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTAGTTTTACAGATTTTACTATTATTTTTTTTTAAATATAGTTTC  939

seq1  CAAATGGTTTTCCACTTGAACTTTTATTCATGGTTTTCCTTATCTCTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTTTTCCACTTGAACTTTTATTCATGGTTTTCCTTATCTCTCAT  989

seq1  TGTTCCACACATTGTCTAGGGTCAGGGCATGAAAATAACCATGTGAAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACACATTGTCTAGGGTCAGGGCATGAAAATAACCATGTGAAATG  1039

seq1  CCAATTATTTTTTTGGTTAAGTGTTTAAGAAACTGATTAAGAAAGCTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATTTTTTTGGTTAAGTGTTTAAGAAACTGATTAAGAAAGCTAAA  1089

seq1  AATATCTGCATAGTTCATTGTGAATTC  1127
      |||||||||||||||||||||||||||
seq2  AATATCTGCATAGTTCATTGTGAATTC  1116