BAC Information

Click to search

BAC

Clone NameB6Ng01-253C22
Chromosome4 (Build37)
Map Location 145,587,727 - 145,588,910
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253C22.bB6Ng01-253C22.g
ACCGA059986GA059987
length1,1291,166
definitionB6Ng01-253C22.b B6Ng01-253C22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactttgtactcacactcagttaaatgcctctgaggaaaaggct
tcttttatttctttccttaactcaacacagatgcattattaatcatcagt
atgtttaatctactcacatatgaggaatcaattagcttgtgacttttttt
tttgcataagtacaatatgggaaaaactaaaattcaccccaatgggaaac
aagtagccctgtcatctgaaaggtgtccatgggcacagaaccctgttctt
taaagtcagacccccaggtttgggcttgtgcttctgagctctcaccgcca
tgctgagctagaatccattttaacctctcataatcatcacaacaggtttt
gaacctaagaggttacatgagaattctggaactcattataatcatgaaaa
gagttgtcttcctagcaacagtctaatgagacgtgggtaaatctcaagtc
tcctttcccccacttatgctgacatgcatgggtgtacatagagtgttaca
gggaacaatcaggaaaccatttatgaacaaacagtgcagtatgtattgta
attttgttctagttttctttctttctttctctctttctctctttctttct
ttctttctttctttctttctttctttctttctttctttctttctgtctct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttccttactttttttttggcaaagatcaggacagtt
ttccaaaggagtttctctttattgcctcatccttcaagcagtaaataata
ttgtcccttgacctaacatcattttaattcaccattttctttgattgagg
catccacctcctctacttttttctttaagtctgataatctgtctcccaca
ggttctctatgtatcatttttatttgcctcactgcattttctcttcagga
tttttttttttttgtggtatttctaagcacctattgaacataatttttaa
tattttatattgtcctttatttcccttcagcatctgggtaattattttct
ttgccagaattcattttgttttctgtctgagtggattccacatgggttta
caaacttgactgtccttgatcatggactg
gaattcacaatgaagcaactgtggaaggctgagaaacttcaaaagaaatg
ttcaaagtctttagtgatcagaaaaatataaatcaaagcaacactgagat
tccaccttccaccaatcagaatggctaagatcaaaaactcaggtgacagc
acttgctggccaggatgtggagaaagaggaccactcctccattgcttgtg
gaattgcaaactggtcaaccattctggaaatcaatctggagattcctaag
aaaattggaaatagatataccttaaaacccagctacaccactcttgggca
tatacacaaaagatgccccaccatgacacaggggcttgtgttccactatg
ttcagagtggccttatttgtgatagccaggagctggaaacaacccatatg
ccccacaatggaagactcgatactgaaatatggttcgtttacacaatgga
atattattcatctattaagaacaatgacatcaagaggtttggaggaaaat
ggattgaactaggaaattccatcctgagtgaggtaactcaaactcagaaa
ggacatgcatagtatgtacacactaataaacggatatcagccaaaaaaag
tatataataaaatgtaaatgacgaaagagggttaataagttcaaggttcc
aagtgaggatgtctcaatcccacttgggagagagaagaaagcagtcatgg
gtgaagaaggagggagggacctgagtgggagtagggacagagaagggaag
gggaaacatgatcagacattatgagggataggggggaggactgaagccct
gaggaccagtagaaaaaatggaaatagacagcctcagcaagtaggctatg
gaggtccatctcacatgttccaaagacctaggaggtgagagactcccagg
actcaaaagggagagactttggataaagtgctgtccagcttcagtggagt
gatggagttgcaattgtttcctgtttgaaggatcctccagggacaaacct
gggagaagcacatgagagaaagggatgtcccatggcacaaacccgaatag
gatcataatcagggggaaggtcaagaagcagtgaccactgttactcccta
tctgtggtgtggcctgtaacagaggagggcttgcatgtgctgtgctccct
ctaggaaggcttgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145587727_145588910
seq2: B6Ng01-253C22.b_43_1171 (reverse)

seq1  CAGT-CATGATCAAGGACATTAAAGTTTGTAAACC--TGT-GAATCCACT  46
      |||| |||||||||||||| | |||||||||||||  ||| |||||||||
seq2  CAGTCCATGATCAAGGACAGTCAAGTTTGTAAACCCATGTGGAATCCACT  50

seq1  CAGACAG-GAACAAAATGAATCTTGGTCAAGAAAATAA--CACCAGATGC  93
      |||||||  ||||||||||||  |||  ||||||||||    ||||||| 
seq2  CAGACAGAAAACAAAATGAATTCTGGCAAAGAAAATAATTACCCAGATG-  99

seq1  CTGAA-GGAAAT-AAGGACAATATAAAATATT-AAAATTATGTTCAATAG  140
      ||||| |||||| ||||||||||||||||||| |||||||||||||||||
seq2  CTGAAGGGAAATAAAGGACAATATAAAATATTAAAAATTATGTTCAATAG  149

seq1  GTGCTTAGAAATGCCAC--ACAAAAAAAAATCCTGAAGAGAAAATGCAGT  188
      |||||||||||| ||||  | |||||||||||||||||||||||||||||
seq2  GTGCTTAGAAATACCACAAAAAAAAAAAAATCCTGAAGAGAAAATGCAGT  199

seq1  GAGGCAAATAAAAATGATACATAGAGAACCTGTGGGAGACAGATTATCAG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAATAAAAATGATACATAGAGAACCTGTGGGAGACAGATTATCAG  249

seq1  ACTTAAAG-AAAAAGTAGAGGAGGTGGATGCCTCAATCAAAGAAAATGGT  287
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGAAAAAAGTAGAGGAGGTGGATGCCTCAATCAAAGAAAATGGT  299

seq1  GAATTAAAATGATGTTAGGTCAAGGGACAATATTATTTACTGCTTGAAGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAATGATGTTAGGTCAAGGGACAATATTATTTACTGCTTGAAGG  349

seq1  ATGAGGCAATAAAGAGAAACTCCTTTGGAAAACTGTCCTGATCTTTGTCA  387
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGAGGCAATAAAGAGAAACTCCTTTGGAAAACTGTCCTGATCTTTGCCA  399

seq1  AAAAAAAAGTAAGGAAAGGAAGAAAGAAAGAAAGAAAGAGAGAGAGACAG  437
      ||||||||||||||||                                ||
seq2  AAAAAAAAGTAAGGAA--------------------------------AG  417

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  467

seq1  AGAAAGAAAGAAAGCGAGAGAGAGACAGAAAGAAAGAAAGAAAGAAAGAA  537
      ||||||||||||        ||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAA--------AGAGACAGAAAGAAAGAAAGAAAGAAAGAA  509

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAG  587
      ||||||||||||||||||||||||||||||| ||||              
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAA--------------  545

seq1  ACAGTAAGAAAGACAGACAGACAGAAAGAGAGAAAGAAAACTAGAACAAA  637
                        ||| ||||||| ||||||||||||||||||||
seq2  ------------------AGAGAGAAAGAAAGAAAGAAAACTAGAACAAA  577

seq1  ATTACAATACATACTGCACTGTTTGTTGATAAATGGTTTCCTGATTGTTC  687
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTACAATACATACTGCACTGTTTGTTCATAAATGGTTTCCTGATTGTTC  627

seq1  CCTGTAACACTCTATGTACACCCATGCATGTCAGCATAAGTGGGGGAAAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACACTCTATGTACACCCATGCATGTCAGCATAAGTGGGGGAAAG  677

seq1  GAGACTCGAGATTTACCCAAGTCTCATTAGACTGTTGCTAGGAAGTCAAC  787
      |||||| |||||||||||| ||||||||||||||||||||||||| ||||
seq2  GAGACTTGAGATTTACCCACGTCTCATTAGACTGTTGCTAGGAAGACAAC  727

seq1  TCTTTTCATGATTATAATGAGTTCCAGAATTCTCATGTGACCTCTTAGGT  837
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTTTCATGATTATAATGAGTTCCAGAATTCTCATGTAACCTCTTAGGT  777

seq1  TCAAAACCTGTTGTGATGATTATGAGAGGTTAAAATGGATTCTAGCTCAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCTGTTGTGATGATTATGAGAGGTTAAAATGGATTCTAGCTCAG  827

seq1  CATGGAGGTGAGAGCTCAGAAGCACAAGCCCAAACCTGGGGGTCTGACTT  937
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGGTGAGAGCTCAGAAGCACAAGCCCAAACCTGGGGGTCTGACTT  877

seq1  TAAAGAACAGGGTTCTGTGCCCATGGACACCTTTCAGATGACAGGGCTAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACAGGGTTCTGTGCCCATGGACACCTTTCAGATGACAGGGCTAC  927

seq1  TAGTTTCGCATTGGGGTGATTTTTAGTTTTTCCCATATTGTACTTATGC-  1036
      | ||||| ||||||||||| ||||||||||||||||||||||||||||| 
seq2  TTGTTTCCCATTGGGGTGAATTTTAGTTTTTCCCATATTGTACTTATGCA  977

seq1  -AAAAGAAAGTCACAAGCTAATTGATTCCTCATATGTGAGTAGATTAAAC  1085
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTCACAAGCTAATTGATTCCTCATATGTGAGTAGATTAAAC  1027

seq1  ATACTGGTGGTTAATAATGCATCTGTGTTGAGTTAAGGAAAGAAATGA--  1133
      |||||| || |||||||||||||||||||||||||||||||||||| |  
seq2  ATACTGATGATTAATAATGCATCTGTGTTGAGTTAAGGAAAGAAATAAAA  1077

seq1  -AAGCCTTTTCCTCAGAGGCATTTAGCTGAGTGTGAGTACAAAGTTGAAT  1182
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAGCCTTTTCCTCAGAGGCATTTAACTGAGTGTGAGTACAAAGTTGAAT  1127

seq1  TC  1184
      ||
seq2  TC  1129