BAC Information

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BAC

Clone NameB6Ng01-253F08
Chromosome4 (Build37)
Map Location 17,063,996 - 17,208,330
singlet/doubletdoublet
Overlap geneLOC100040173
Upstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253F08.bB6Ng01-253F08.g
ACCGA060098GA060099
length1,141746
definitionB6Ng01-253F08.b B6Ng01-253F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,207,181 - 17,208,330)(17,063,996 - 17,064,727)
sequence
gaattcattatttgaaagcaatattatctgtaataaacattagggaattt
cttcaggctaaacgaatttgataccagactgaaacagaagtaaaggaaat
gaatataatttctattctgattttgactggcctagaaaaacaatgagaat
gtaaaagacaacctcactgttactgaacctagtggttcctatacaatctc
atcgaaaacaccaacgctcagttcacagaaccaagaaattcagttctcaa
tcttctttgcatggtagctagtgtgttggaagatgaaatcataggcttaa
tgaaatgagggggggaaaaaaagcaagtatttttgatctctgtaagcagg
caaagttctgtttcttggcctcattgcaaggagtgatattcctgaggcat
ttgtgctttctatcacgttatacatttcatgtcagtaacaggtctcctcc
acacaggggtcatacattttagtaactagcttatgtatgtttataataca
atttacaggaatacatatttctactgttttacaaaatagttaaaatgttt
tgacaccattattaatttaataattttcttaagaaattgcattatttttt
aaatctaaatcatatattttttccaggtgtgtttaggattaaatatataa
taaatgagtattataattttactaaatatactataattattttactggat
agtaaatgaatatataataataatttataaaaaaatatatatgagttttg
acttcatgtgcatctgtgtacccctatgtgcatgactagctatctcatac
cctggactgaagttagagatcattgtgaaccattatgtgggtgtcagaaa
ctgaacccaggtccactgaaggaacaaaaatgttttatccagtataaaaa
tctctctaacaccaatcatggatatctgaaaaactgagtaagttctctta
ttctttctttgattaccatactgttttttcctttttacaaaattatttgt
tgaacacagataaaataattgcctttacaaagacttggtgattcatatac
tatttttccctctttatttatttatttaatactatattcagactgccagt
tccctctctttctctatttcccagtcatctccatactccct

gaattcagtcagagaagaggcacctaatccttaagagaatggaagtccca
gggagtgatggcatctggttgggtggggtagagtggggacaccctcatga
agacaggaaggtggtgaggaagtatgggatgaggaactgtaatatgtatg
gtatgtactcaataataagtggatattagtaaaaaaatattcaaagtacc
caagatacagtccacaaaactcaaaaaggttaacaagccaaaggccgaag
tgagtacacctcaatcccacttgggaggaagaagaaagcaatcacaaagg
gggagagggataaaatcaggagttaataaaaagattaaattattttttta
aaaaaatcaaaatataccaaattaaaaaatatttctccatgaaatatagc
ttaataaatatactagattagatgataaactaatgaatagataggtagag
aagtagatagttagatgaatacatacatattgaggtgatagatagttggt
atatatatagatagatgcatatttgcacagatacatagatgaaagataga
gagagagagagagagagagatttctgtttgtatagcaagtaaaaattatt
ttggtaaaggaaaggttacctctttgcaaagcacatggggactaaaagta
atgtcaaaacatcctctgaaatattttgatatctgatattaaaacattta
acttatccttcttatgcatcaatttaactaaaaattaaaaaaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17207181_17208330
seq2: B6Ng01-253F08.b_42_1182 (reverse)

seq1  AGGGAGTATGGGAGAATGAGTGGG-AATAGAGAAGAGAGGGGAAACT-GC  48
      ||||||||| |||| |||| |||| ||||||||| |||| || |||| ||
seq2  AGGGAGTAT-GGAG-ATGACTGGGAAATAGAGAA-AGAGAGGGAACTGGC  47

seq1  AGTCTGGATATTAAGTAATTAAATAAATAAATTAAAGAGGGAAAAATAGT  98
      |||||| ||||  ||| |||||||||||||| ||||||||||||||||||
seq2  AGTCTGAATAT--AGT-ATTAAATAAATAAA-TAAAGAGGGAAAAATAGT  93

seq1  ATAATGAATCACCAAAGTCTTTGTAAAGGCAATTATTTTTATCTGTGTTC  148
      || |||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  AT-ATGAATCACC-AAGTCTTTGTAAAGGCAATTA-TTTTATCTGTGTTC  140

seq1  AACAAATAATTTTGTAAAAAGGAAAAAAACAGTATGGTAATCAAAGAAAG  198
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACAAATAATTTTGTAAAAAGG-AAAAAACAGTATGGTAATCAAAGAAAG  189

seq1  AATAAGAGAACTTACTCAGTTTTTCAGATATCCATGATTGGTGTTAGAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGAACTTACTCAGTTTTTCAGATATCCATGATTGGTGTTAGAGA  239

seq1  GATTTTTATACTGGATAAAACATTTTTGTTCCTTCAGTGGACCTGGGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATACTGGATAAAACATTTTTGTTCCTTCAGTGGACCTGGGTTC  289

seq1  AGTTTCTGACACCCACATAATGGTTCACAATGATCTCTAACTTCAGTCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGACACCCACATAATGGTTCACAATGATCTCTAACTTCAGTCCA  339

seq1  GGGTATGAGATAGCTAGTCATGCACATAGGGGTACACAGATGCACATGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGAGATAGCTAGTCATGCACATAGGGGTACACAGATGCACATGAA  389

seq1  GTCAAAACTCATATATATTTTTTTATAAATTATTATTATATATTCATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACTCATATATATTTTTTTATAAATTATTATTATATATTCATTTA  439

seq1  CTATCCAGTAAAATAATTATAGTATATTTAGTAAAATTATAATACTCATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAGTAAAATAATTATAGTATATTTAGTAAAATTATAATACTCATT  489

seq1  TATTATATATTTAATCCTAAACACACCTGGAAAAAATATATGATTTAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATATTTAATCCTAAACACACCTGGAAAAAATATATGATTTAGAT  539

seq1  TTAAAAAATAATGCAATTTCTTAAGAAAATTATTAAATTAATAATGGTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATAATGCAATTTCTTAAGAAAATTATTAAATTAATAATGGTGT  589

seq1  CAAAACATTTTAACTATTTTGTAAAACAGTAGAAATATGTATTCCTGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTTTAACTATTTTGTAAAACAGTAGAAATATGTATTCCTGTAA  639

seq1  ATTGTATTATAAACATACATAAGCTAGTTACTAAAATGTATGACCCCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTATAAACATACATAAGCTAGTTACTAAAATGTATGACCCCTGT  689

seq1  GTGGAGGAGACCTGTTACTGACATGAAATGTATAACGTGATAGAAAGCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAGACCTGTTACTGACATGAAATGTATAACGTGATAGAAAGCAC  739

seq1  AAATGCCTCAGGAATATCACTCCTTGCAATGAGGCCAAGAAACAGAACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTCAGGAATATCACTCCTTGCAATGAGGCCAAGAAACAGAACTT  789

seq1  TGCCTGCTTACAGAGATCAAAAATACTTGCTTTTTTTCCCCCCCTCATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTACAGAGATCAAAAATACTTGCTTTTTTTCCCCCCCTCATTT  839

seq1  CATTAAGCCTATGATTTCATCTTCCAACACACTAGCTACCATGCAAAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGCCTATGATTTCATCTTCCAACACACTAGCTACCATGCAAAGAA  889

seq1  GATTGAGAACTGAATTTCTTGGTTCTGTGAACTGAGCGTTGGTGTTTTCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGAACTGAATTTCTTGGTTCTGTGAACTGAGCGTTGGTGTTTTCG  939

seq1  ATGAGATTGTATAGGAACCACTAGGTTCAGTAACAGTGAGGTTGTCTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTGTATAGGAACCACTAGGTTCAGTAACAGTGAGGTTGTCTTTT  989

seq1  ACATTCTCATTGTTTTTCTAGGCCAGTCAAAATCAGAATAGAAATTATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCATTGTTTTTCTAGGCCAGTCAAAATCAGAATAGAAATTATAT  1039

seq1  TCATTTCCTTTACTTCTGTTTCAGTCTGGTATCAAATTCGTTTAGCCTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTTTACTTCTGTTTCAGTCTGGTATCAAATTCGTTTAGCCTGA  1089

seq1  AGAAATTCCCTAATGTTTATTACAGATAATATTGCTTTCAAATAATGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCCCTAATGTTTATTACAGATAATATTGCTTTCAAATAATGAAT  1139

seq1  TC  1150
      ||
seq2  TC  1141


seq1: chr4_17063996_17064727
seq2: B6Ng01-253F08.g_64_809

seq1  GAATTCAGTCAGAGAAGAGGCACCTAATCCTTAAGAGAATGGAAGTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGAGAAGAGGCACCTAATCCTTAAGAGAATGGAAGTCCCA  50

seq1  GGGAGTGATGGCATCTGGTTGGGTGGGGTAGAGTGGGGACACCCTCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGATGGCATCTGGTTGGGTGGGGTAGAGTGGGGACACCCTCATGA  100

seq1  AGACAGGAAGGTGGTGAGGAAGTATGGGATGAGGAACTGTAATATGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAAGGTGGTGAGGAAGTATGGGATGAGGAACTGTAATATGTATG  150

seq1  GTATGTACTCAATAATAAGTGGATATTAGTAAAAAAATATTCAAAGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACTCAATAATAAGTGGATATTAGTAAAAAAATATTCAAAGTACC  200

seq1  CAAGATACAGTCCACAAAACTCAAAAAGGTTAACAAGCCAAAGGCCGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACAGTCCACAAAACTCAAAAAGGTTAACAAGCCAAAGGCCGAAG  250

seq1  TGAGTACACCTCAATCCCACTTGGGAGGAAGAAGAAAGCAATCACAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACACCTCAATCCCACTTGGGAGGAAGAAGAAAGCAATCACAAAGG  300

seq1  GGGAGAGGGATAAAATCAGGAGTTAATAAAAAGATTAAATTATTTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGATAAAATCAGGAGTTAATAAAAAGATTAAATTATTTTTTTA  350

seq1  AAAAAATCAAAATATACCAAATTAAAAAATATTTCTCCATGAAATATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAAAATATACCAAATTAAAAAATATTTCTCCATGAAATATAGC  400

seq1  TTAATAAATATACTAGATTAGATGATAAACTAATGAATAGATAGGTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATATACTAGATTAGATGATAAACTAATGAATAGATAGGTAGAG  450

seq1  AAGTAGATAGTTAGATGAATACATACATATTGAGGTGATAGATAGTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATAGTTAGATGAATACATACATATTGAGGTGATAGATAGTTGGT  500

seq1  ATATATATAGATAGATGCATATTTGCACAGATACATAGATGAAAGATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAGATAGATGCATATTTGCACAGATACATAGATGAAAGATAGA  550

seq1  GAGAGAGAGAGAGAGAGAGA-TTCTG-TTGTATAGCAAGT-AAAATTA-T  596
      |||||||||||||||||||| ||||| ||||||||||||| ||||||| |
seq2  GAGAGAGAGAGAGAGAGAGATTTCTGTTTGTATAGCAAGTAAAAATTATT  600

seq1  TTGGT-AAGGAA--GGTACCTCTTTGCAAAGCACAT-GGGACTAAAAGTA  642
      ||||| ||||||  | |||||||||||||||||||| |||||||||||||
seq2  TTGGTAAAGGAAAGGTTACCTCTTTGCAAAGCACATGGGGACTAAAAGTA  650

seq1  ATGTC-AAACAT-CTCTGAAATATTTTTGATATCTGATATT-AAACA-TT  688
      ||||| |||||| |||||||||| ||||||||||||||||| ||||| ||
seq2  ATGTCAAAACATCCTCTGAAATA-TTTTGATATCTGATATTAAAACATTT  699

seq1  AACTTATCCTTCTTATGCATCAGTTT-ACTAAAA--TAAAAAAAATC  732
      |||||||||||||||||||||| ||| |||||||  |||||||||||
seq2  AACTTATCCTTCTTATGCATCAATTTAACTAAAAATTAAAAAAAATC  746


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