BAC Information

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BAC

Clone NameB6Ng01-253L04
Chromosome4 (Build37)
Map Location 34,996,250 - 34,997,373
singlet/doubletsinglet
Overlap geneMobkl2b
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253L04.bB6Ng01-253L04.g
ACCGA060362GA060363
length1,2011,108
definitionB6Ng01-253L04.b B6Ng01-253L04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gatcataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacatgccaatccatgagcatgggagatctttccatcttctgagatctt
ctttaatttcttttcttcagagactttgaagtttttatcatacagatctt
tcactttctttagttagagtcacgccgagatatttttatattatttgttg
actattgagaagggtgtttgttttcccctaattttctttctcagcctgtt
tattcttttgtattagagaaagggccatttgacttgtttgagtttatttt
tattatcccagctacttcaccgaagctgttttatcagtttaaggagtctc
tggtagattttttagggtcacttatatataccttcataatcatctgccaa
agtgaatttggacttcctccttgcaaatttgtaattcccctctgtaatct
c
gaattcaaaagagatggaaaattccagagcagtcattgcaaaacacaaaa
gcttgctaagccacttttcttgcctgcagagaatttttgtggttgttaag
gttttgttttgtttgtttgttttttgtttctgagaacacaggctagctcc
tggtacttagcatggcaaagctaaccttctgaacttttccttccacacca
ttaaccgggtgaatttggttggtgtttgttaagctgccttccagactgcc
agtaaaaagagaatttcccggtataggctcagatttcacctcatcgttaa
accccaacaatttggctagggctaatttagccaaaccttaaagaggtttc
tccagttaggaacggctgagattttgtaaagatggtagaaaaattgactt
ctggaatggtgaaaattcccaactttttctttttaagggagacttttttt
ttttaattttaaatttaaaagaatcccacaccccctgtttttaaacctta
caaggacagtctctattctcctgggaggtgatgctaattcaccctaaaat
ttagaaatatacaaacaaaccccatgagtcagtcacgtgcaaaggatcaa
aagttaaacacgccgcattatttgtctcacttagctagagatgtgccgtg
tgggcttcttttggaattaaatcacattcccaacctcctccccagactac
ccgaggcctaactaccaaagttgaaaggacagtgagaaagaaaatggagt
ccctgacagatgacattgcttgggaatcccagatcccagagagggtccgt
cccatggagaggagggccgtaagcactatctagaaaaacaaaggcctctc
ttgggaaggccggcttgacctcaagtgaccacaagagctgagtaccacag
agagaataccagggcgccaataaacctgtctcaaagagcacagcaacagt
gggggcacttgctcttgctcctcagcgcctgccattctccaggctctttt
ctctgctttaaggtgtgggtctgctggcaagggagtgtgaagctgagatc
tgggatctgaaggcaagctctagagacgcccagaggagaagagaaacatt
ttctaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34996250_34997373
seq2: B6Ng01-253L04.g_66_1173

seq1  GAATTCAAAAGAGATGGAAAATTCCAGAGCAGTCATTGCAAAACACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGAGATGGAAAATTCCAGAGCAGTCATTGCAAAACACAAAA  50

seq1  GCTTGCTAAGCCACTTTTCTTGCCTGCAGAGAATTTTTGTGGTTGTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTAAGCCACTTTTCTTGCCTGCAGAGAATTTTTGTGGTTGTTAAG  100

seq1  GTTTTGTTTTGTTTGTTTGTTTTTTGTTTCTGAGAACACAGGCTAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTGTTTGTTTTTTGTTTCTGAGAACACAGGCTAGCTCC  150

seq1  TGGTACTTAGCATGGCAAAGCTAACCTTCTGAACTTTTCCTTCCACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTAGCATGGCAAAGCTAACCTTCTGAACTTTTCCTTCCACACCA  200

seq1  TTAACCGGGTGAATTTGGTTGGTGTTTGTTAAGCTGCCTTCCAGACTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCGGGTGAATTTGGTTGGTGTTTGTTAAGCTGCCTTCCAGACTGCC  250

seq1  AGTAAAAAGAGAATTTCCCGGTATAGGCTCAGATTTCACCTCATCGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGAGAATTTCCCGGTATAGGCTCAGATTTCACCTCATCGTTAA  300

seq1  ACCCCAACAATTTGGCTAGGGCTAATTTAGCCAAACCTTAAAGAGGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACAATTTGGCTAGGGCTAATTTAGCCAAACCTTAAAGAGGTTTC  350

seq1  TCCAGTTAGGAACGGCTGAGATTTTGTAAAGATGGTAGAAAAATTGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTAGGAACGGCTGAGATTTTGTAAAGATGGTAGAAAAATTGACTT  400

seq1  CTGGAATGGTGAAAATTCCCAACTTTTTCTTTTTAAGGGAGACTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGGTGAAAATTCCCAACTTTTTCTTTTTAAGGGAGACTTTTTTT  450

seq1  TTTTAATTTTAAATTTAAAAGAATCCCACACCCCCTGTTTTTAAACCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTAAATTTAAAAGAATCCCACACCCCCTGTTTTTAAACCTTA  500

seq1  CAAGGACAGTCTCTATTCTCCTGGGAGGTGATGCTAATTCACCCTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACAGTCTCTATTCTCCTGGGAGGTGATGCTAATTCACCCTAAAAT  550

seq1  TTAGAAATATACAAACAAACCCCATGAGTCAGTCACGTGCAAAGGATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATATACAAACAAACCCCATGAGTCAGTCACGTGCAAAGGATCAA  600

seq1  AAGTTAAACACGCCGCATTATTTGTCTCACTTAGCTAGAGATGTGCCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAACACGCCGCATTATTTGTCTCACTTAGCTAGAGATGTGCCGTG  650

seq1  TGGGCTTCTTTTGGAATTAAATCACATTCCCAACCTCCTCCCCAGACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCTTTTGGAATTAAATCACATTCCCAACCTCCTCCCCAGACTAC  700

seq1  CCGAGGCCTAACTACCAAAGTTGAAAGGACAGTGAGAAAGAAAATGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGCCTAACTACCAAAGTTGAAAGGACAGTGAGAAAGAAAATGGAGT  750

seq1  CCCTGACAGATGACATTGCTTGGGAATCCCAGATCCCAGAGAGGGTCCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACAGATGACATTGCTTGGGAATCCCAGATCCCAGAGAGGGTCCGT  800

seq1  CCCATGGAGAGGAGGGCCGTAAGCACTATCTAGAAAAAC-AAGGCCTCTC  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCATGGAGAGGAGGGCCGTAAGCACTATCTAGAAAAACAAAGGCCTCTC  850

seq1  TTGGGAAGGCCGGCTTGACCTCAAGTGACCACAAGAGCTGAGTACCACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGGCCGGCTTGACCTCAAGTGACCACAAGAGCTGAGTACCACAG  900

seq1  AGAGAATACCAGGGCGCCAATAAACCTGTCTCAAAGAGGCACAGCACAGG  949
      ||||||||||||||||||||||||||||||||||||| ||||||||   |
seq2  AGAGAATACCAGGGCGCCAATAAACCTGTCTCAAAGA-GCACAGCAACAG  949

seq1  TGGGGGCACTTGCTC-TGCCCCTCAGCGCCCTGCCA-TCTCCAGGGCTCT  997
      ||||||||||||||| ||| |||||||| ||||||| |||||| ||||||
seq2  TGGGGGCACTTGCTCTTGCTCCTCAGCG-CCTGCCATTCTCCA-GGCTCT  997

seq1  TTTTCCTCTGCTTTTAAAGTTGTGGGGTCTGCTGCCAGGGGAGGTGTGAA  1047
      |||  |||||||||  ||| ||| |||||||||| || |||| |||||||
seq2  TTT--CTCTGCTTT--AAGGTGT-GGGTCTGCTGGCAAGGGA-GTGTGAA  1041

seq1  GCTGAGAATCTTGGGATTCTGAAAGGCAAAGCTCTAGAGACCGCCCCAGA  1097
      |||||| ||| ||||| |||| ||||| |||||||||||||   ||||||
seq2  GCTGAG-ATC-TGGGA-TCTG-AAGGC-AAGCTCTAGAGAC--GCCCAGA  1084

seq1  GGGAGAAGAG-AACATTTTTTCCTAAGT  1124
       ||||||||| ||||||||   ||||||
seq2  -GGAGAAGAGAAACATTTT---CTAAGT  1108