BAC Information

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BAC

Clone NameB6Ng01-254D08
Chromosome4 (Build37)
Map Location 91,690,534 - 91,880,953
singlet/doubletdoublet
Overlap geneLOC664886, 1700011H22Rik, LOC68280
Upstream geneLOC664840, LOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik
Downstream geneLOC620269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254D08.bB6Ng01-254D08.g
ACCGA060739GA060740
length1,0091,118
definitionB6Ng01-254D08.b B6Ng01-254D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,690,534 - 91,691,545)(91,879,844 - 91,880,953)
sequence
gaattcctttgtaaatcattatctaagttatgtttgagatatcatttatt
ttacttcactaaatctagagctcattgattacattagattggctggctag
taagctcttggtgttcttctctctgtgcctcttgacatctgcttggcctt
ctgtgtgagttctgttgaactcacatgactcacatgactcaacatgacta
ctcatgctggacaagcaaatcacctactgagccatctctctgtcatttag
ggtatagaaaatatataattatgcattcaaccctgacatttgtgatctat
gttacctaaaataaaatcatctaggctgttttaatgtttcttgagaagaa
cagaaaaaaatatattttaattactcaaataaaaaaccatgactataaga
atatttcatttcatgaattatcttgcaaatatgtactaaacgatgaaatg
gaggtagagatgataatctttagaaagaaaatgtaaaacagtattgatag
ctgcatgcacagattgtaatattttactggattgacagatatactcacac
tttgaggggaccatttccttttgcaacctttcagtggctgtgtgtttctc
agattatctaagtgctctatacctagttcctctgagttcctccaatatac
tcaatattttcatgttattttttttcttaacactttgcagagcctctcta
atctcaaacacactgccttcagcgtctttttgttagtacttacttatctc
tgaaagcttatgttttacttttgtttttgtactcttacatggagagtgat
cacatttttctttgagagctttacacaatgagggaaatccagtaactgca
cgtggcttccatgtgaacaggctcttttctacccactattgcaatggctc
agaaaggaagtacgtctcagtgttgttcacaataaatcaacatgcatcct
tgtatagtgtattcagtacttaaagtatgaatatgactctctataagtgt
acttcgaaa

gaattcaagaagcaaaccaccaagaaaccaaacaattcaataaaatactg
ggtatagaactaaacagaggaaccttgaatggctgagaagcacttaaatg
tccaaagcccttagtgatcaaggaaatgaaaatcaaaatgactctgagat
tctacctcacaccaatcaaaatggctaagatcaaaaatttaggtgacagc
tcagatttgcaaggatttagagaaacaggaacactcccccattgctgata
gatatggaagctgatacaaccactctggaaataaatctgaagactcctca
gaaaattagaaatagataaatagatatgcctgaagagctataccattctt
gggcatatacccaaaggatgttccaccatgctacaggagcacatgattca
gtgtgttcatcgtggccttctttatgatagtctcgaaaaaccaaaaaaaa
aaaaaaaaaaaaaaaaaaagactaaaaattttaaaaaatataattgatga
aaaaatgtataaaattcaaagtgaagcaataaacttcacagcctcagaat
ggttgtcctaagagcacagaagttcattgaggtgaacaaactttggattc
gacaagcacttgtctgagtggttatgcttttgcatttctttacattatga
tgattaaaacatgaacgaaatatcttcccaattattgcattttataatgt
ctgccttactttcacacaattcccagcagtgttttcccagtgttttcttc
tttcttgtggatccttcttgaggtagcagaggaggaagagaatagggagg
gtaagactttgtcttaagattcaggggtaagacttagtcttaccagatat
ttttgggtttgctgtataataataaagagtttactttatctgagtctaag
ttatatgctactgtaggtgacctgtctttctgtgatgcacttaggacatc
ttccttcaacagcaaagattaagtaaatagtctttgtactattcctcagc
cagagcttgctcagctcctaccttttcaagcctgcttagttggaagtcca
caggagaaaatggacacctgaaaaattgattagagcattattactaggtt
gtaaaagttccctatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91690534_91691545
seq2: B6Ng01-254D08.b_44_1052

seq1  GAATTCCTTTGTAAATCATTATCTAAGTTATGTTTGAGATATCATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGTAAATCATTATCTAAGTTATGTTTGAGATATCATTTATT  50

seq1  TTACTTCACTAAATCTAGAGCTCATTGATTACATTAGATTGGCTGGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCACTAAATCTAGAGCTCATTGATTACATTAGATTGGCTGGCTAG  100

seq1  TAAGCTCTTGGTGTTCTTCTCTCTGTGCCTCTTGACATCTGCTTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTTGGTGTTCTTCTCTCTGTGCCTCTTGACATCTGCTTGGCCTT  150

seq1  CTGTGTGAGTTCTGTTGAACTCACATGACTCACATGACTCAACATGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAGTTCTGTTGAACTCACATGACTCACATGACTCAACATGACTA  200

seq1  CTCATGCTGGACAAGCAAATCACCTACTGAGCCATCTCTCTGTCATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTGGACAAGCAAATCACCTACTGAGCCATCTCTCTGTCATTTAG  250

seq1  GGTATAGAAAATATATAATTATGCATTCAACCCTGACATTTGTGATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGAAAATATATAATTATGCATTCAACCCTGACATTTGTGATCTAT  300

seq1  GTTACCTAAAATAAAATCATCTAGGCTGTTTTAATGTTTCTTGAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTAAAATAAAATCATCTAGGCTGTTTTAATGTTTCTTGAGAAGAA  350

seq1  CAGAAAAAAATATATTTTAATTACTCAAATAAAAAACCATGACTATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAATATATTTTAATTACTCAAATAAAAAACCATGACTATAAGA  400

seq1  ATATTTCATTTCATGAATTATCTTGCAAATATGTACTAAACGATGAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTTCATGAATTATCTTGCAAATATGTACTAAACGATGAAATG  450

seq1  GAGGTAGAGATGATAATCTTTAGAAAGAAAATGTAAAACAGTATTGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGAGATGATAATCTTTAGAAAGAAAATGTAAAACAGTATTGATAG  500

seq1  CTGCATGCACAGATTGTAATATTTTACTGGATTGACAGATATACTCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCACAGATTGTAATATTTTACTGGATTGACAGATATACTCACAC  550

seq1  TTTGAGGGGACCATTTCCTTTTGCAACCTTTCAGTGGCTGTGTGTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGGACCATTTCCTTTTGCAACCTTTCAGTGGCTGTGTGTTTCTC  600

seq1  AGATTATCTAAGTGCTCTATACCTAGTTCCTCTGAGTTCCTCCAATATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATCTAAGTGCTCTATACCTAGTTCCTCTGAGTTCCTCCAATATAC  650

seq1  TCAATATTTTCATGTTA-TTTTTTTCTTAACACTTTGCAGAGCCTCTCTA  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAATATTTTCATGTTATTTTTTTTCTTAACACTTTGCAGAGCCTCTCTA  700

seq1  ATCTCAAACACACTGCCTTCAGCGTCTTTTTGTTAGTACTTACTTATCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAACACACTGCCTTCAGCGTCTTTTTGTTAGTACTTACTTATCTC  750

seq1  TGAAAGCTTATGTTTTACTTTTGTTTTTGTACTCTTACATGGAGAGTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTTATGTTTTACTTTTGTTTTTGTACTCTTACATGGAGAGTGAT  800

seq1  CACATTTTTCTTTGAGAGCTTTACACAATGAGGAAAATCCAGTAACTGCA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACATTTTTCTTTGAGAGCTTTACACAATGAGGGAAATCCAGTAACTGCA  850

seq1  CGTGGCTTCCATGTGAACAGGCTC-TTTCTACCCACTA-TGCAATGGCTC  897
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  CGTGGCTTCCATGTGAACAGGCTCTTTTCTACCCACTATTGCAATGGCTC  900

seq1  AGAAAGGAAGTACGTCTCAGTG-TGTTCACAATAAATC-ACATGCAT-CT  944
      |||||||||||||||||||||| ||||||||||||||| |||||||| ||
seq2  AGAAAGGAAGTACGTCTCAGTGTTGTTCACAATAAATCAACATGCATCCT  950

seq1  TGTATAGTTGTTATTCAGTTAAAATTTAAAGTAATTGAAATATTGA--CT  992
      ||||||||   ||||||||    | ||||||||  || |||| |||  ||
seq2  TGTATAGT--GTATTCAGT----ACTTAAAGTA--TG-AATA-TGACTCT  990

seq1  CTATAAGTGTACTTCAGAAA  1012
      ||||||||||||||| ||||
seq2  CTATAAGTGTACTTC-GAAA  1009


seq1: chr4_91879844_91880953
seq2: B6Ng01-254D08.g_68_1185 (reverse)

seq1  TTCATAGGAAACTTTTTACAACCTAGTAATAAATGCTCTAATCATTTTTT  50
      |||||||| ||| ||||||||||||||||| ||||||||||||| |||||
seq2  TTCATAGGGAAC-TTTTACAACCTAGTAAT-AATGCTCTAATCAATTTTT  48

seq1  CA-GTGTCCCTTTTTCTTCCTGT-GACTTCCAACT-AGCAGGC-TGAAA-  95
      || |||||| ||||   |||||| ||||||||||| ||||||| ||||| 
seq2  CAGGTGTCCATTTT--CTCCTGTGGACTTCCAACTAAGCAGGCTTGAAAA  96

seq1  -GTTAGAGCTGAGC-AGCTCCTGCTGAG--ATAGTACAAAGACTATTTAC  141
       ||  ||||||||| |||||  ||||||  ||||||||||||||||||||
seq2  GGTAGGAGCTGAGCAAGCTCTGGCTGAGGAATAGTACAAAGACTATTTAC  146

seq1  TTAATCCTTTGCTGTTTGAGGAAGATGTCCTAAGTGCATCACAG-AAGAC  190
      ||||| ||||||||||  |||||||||||||||||||||||||| |||||
seq2  TTAAT-CTTTGCTGTTGAAGGAAGATGTCCTAAGTGCATCACAGAAAGAC  195

seq1  AGGTCACCTACAGTAGCATATAACTTAGACTCAGAT-AAGTAAACTCTTT  239
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGTCACCTACAGTAGCATATAACTTAGACTCAGATAAAGTAAACTCTTT  245

seq1  ATTATTATACAGCAA--CCCAAAATATCTGGTAAGACTAAGTCTTACCCC  287
      |||||||||||||||  || ||||||||||||||||||||||||||||||
seq2  ATTATTATACAGCAAACCCAAAAATATCTGGTAAGACTAAGTCTTACCCC  295

seq1  TGAATCTTAAGACAAAGTCTTACCCTCCCTATTCTCTTCCTCCTCTGCTA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTAAGACAAAGTCTTACCCTCCCTATTCTCTTCCTCCTCTGCTA  345

seq1  CCTCAAGAAGGATCCACAAGAAAGAAGAAAACACTGGGAAAACACTGCTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGAAGGATCCACAAGAAAGAAGAAAACACTGGGAAAACACTGCTG  395

seq1  GGAATTGTGTGAAAGTAAGGCAGACATTATAAAATGCAATAATTGGGAAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTGTGAAAGTAAGGCAGACATTATAAAATGCAATAATTGGGAAG  445

seq1  ATATTTCGTTCATGTTTTAATCATCATAATGTAAAGAAATGCAAAAGCAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCGTTCATGTTTTAATCATCATAATGTAAAGAAATGCAAAAGCAT  495

seq1  AACCACTCAGACAAGTGCTTGTCGAATCCAAAGTTTGTTCACCTCAATGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTCAGACAAGTGCTTGTCGAATCCAAAGTTTGTTCACCTCAATGA  545

seq1  ACTTCTGTGCTCTTAGGACAACCATTCTGAGGCTGTGAAGTTTATTGCTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGCTCTTAGGACAACCATTCTGAGGCTGTGAAGTTTATTGCTT  595

seq1  CACTTTGAATTTTATACATTTTTTCATCAATTATATTTTTTAAAATTTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGAATTTTATACATTTTTTCATCAATTATATTTTTTAAAATTTTT  645

seq1  AGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACTATCAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACTATCAT  695

seq1  AAAGAAGGCCACGATGAACACACTGAATCATGTGCTCCTGTAGCATGGTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGCCACGATGAACACACTGAATCATGTGCTCCTGTAGCATGGTG  745

seq1  GAACATCCTTTGGGTATATGCCCAAGAATGGTATAGCTCTTCAGGCATAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCCTTTGGGTATATGCCCAAGAATGGTATAGCTCTTCAGGCATAT  795

seq1  CTATTTATCTATTTCTAATTTTCTGAGGAGTCTTCAGATTTATTTCCAGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATCTATTTCTAATTTTCTGAGGAGTCTTCAGATTTATTTCCAGA  845

seq1  GTGGTTGTATCAGCTTCCATATCTATCAGCAATGGGGGAGTGTTCCTGTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTATCAGCTTCCATATCTATCAGCAATGGGGGAGTGTTCCTGTT  895

seq1  TCTCTAAATCCTTGCAAATCTGAGCTGTCACCTAAATTTTTGATCTTAGC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAATCCTTGCAAATCTGAGCTGTCACCTAAATTTTTGATCTTAGC  945

seq1  CATTTTGATTGGTGTGAGGTAGAATCTCAGAGTCATTTTGATTTTCATTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGATTGGTGTGAGGTAGAATCTCAGAGTCATTTTGATTTTCATTT  995

seq1  CCTTGATCACTAAGGGCTTTGGACATTTAAGTGCTTCTCAGCCATTCAAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATCACTAAGGGCTTTGGACATTTAAGTGCTTCTCAGCCATTCAAG  1045

seq1  GTTCCTCTGTTTAGTTCTATACCCAGTATTTTATTGAATTGTTTGGTTTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTGTTTAGTTCTATACCCAGTATTTTATTGAATTGTTTGGTTTC  1095

seq1  TTGGTGGTTTGCTTCTTGAATTC  1110
      |||||||||||||||||||||||
seq2  TTGGTGGTTTGCTTCTTGAATTC  1118


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