BAC Information

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BAC

Clone NameB6Ng01-254D22
Chromosome4 (Build37)
Map Location 61,288,673 - 61,289,817
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127
Downstream geneLOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254D22.bB6Ng01-254D22.g
ACCGA060762GA060763
length1,1951,176
definitionB6Ng01-254D22.b B6Ng01-254D22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaatggctgagaagcacctagagaaaag
ttcaacatccttagtcatcaggtaaatgcaaatcaaaacaaccctgagat
tctcacaccacacagaacagcaaagatcaaaattcaggtgacagcagatg
ctggtgaggatgtagagagagaggaacactcctccattgctagtgggatt
tcaaactggtacaaccactctgaaactcactctggaagtttctcagaaaa
ctggaaatagtattatgtaaggacccagctataccactactgggcatata
cccaaaagatgctccaacatataactaggacacatattccactattttca
taacagccttaattataatagccagaagctggaaagaacccagatgtccc
tcaataaaggaatggatagagaaaaagtggtacattaacacagtggagga
ctactcagctattaaaaacaatgaatttatgaaattctaaggaaaatgat
tagaactagaaaatatcatcctaagtgagataattcaatcacaaacgaac
acacatagtatgcactcactgataagtggatattagcccagaagctcaaa
ataaccaagatacaattcacagaccacatgaagctcaagaagaagtaata
taaaagttcttagaagggggaacaaaatacccataggaggagttacagag
acaaagtgtagaacagagattgaaggaaaagccattcagagactgcccct
cctggcatccatcccaaatacagtcaccaaaaccagacactactgtggat
gccaacaagtgcttgctgacaaaggctctaacagtacctgacaaatacag
aagtacatgctctcaggtgaccattggactgagcacagggttcctaatca
aggagttagagaaaggactgaaggagctaaaggggtttgcaacctcacag
gaggaacaacatatgaatcaccctgtattccccggggctcccagggacta
aaccaacaaccaaaggagtacacatgggaacttcagcccccatttgtagc
agagggattgtctgtcagtcacatgggagggagaggcctgtctggagctc
tgtgcccagtggaggtaatgcaagacagacaggagtggtgtgctgaccaa
ggaaccggaggcgatagggggtttttcgagaggggaaaccaggga
gaattcagacatatactgaaaaacagctaagacttccaaccttgaggact
gaaaaattaatgaattcttggtatttctgttagtagattagctgaactat
atagtctgtaagccattctaataaacaattcacacacatgctgtaaggtt
ttctcttctagagaaccccacctaacacaataccacagaggaatttacat
ttaatttggaatgggtaagaagtaatgaaggcatttggaaaggaactgga
ataggaaaaatgtgtgatgccgcataagatgagacaaaatgtctaaccca
aaaggaccaataacagtttcctatggagaaagagctcagactatctaagg
taacttcagtagaagaatctaagcttggagataggggtttagcctgctgg
ccgtgagtggtaacttggttatcgtgacaccataggttcaatccttagca
gttgaagaacaaaagaatataactcacagattaaaagactagtaaccaaa
ggttttcattgtaaggttagcttgaaacatttgtaatgaaaaatgagatt
aatcttttaaagtagattaacaatggatcctttggagctggagttacaga
tggttgtgggccaccatgtgggtgccataaaccaaacctaagtcctcgga
aggaacagcctgtgcttttaactgatgatgcatctctccagtcccctgat
ttgttatttatttttatttgctatttatacgtttttagatttattttatg
tgtataagtgttttggctgcatgtatgtctatcacatacatgactcatcc
ctgagggagtcagaaaaaggtgccagatcttctggaactgggaggtgtag
attgttgtgagctatcacgtgtaatgctgggaaaatgaattcaggttcgt
atgtgaggggcctcaagtgctctttaacactgagcctacctctccagact
tcaatttttctattttttaaaagggactaataattgagcaccattgtctt
gtgctataactcttccagcctacctcctccttccaaattatacataccaa
tgtattaatacttacaaatggtaataatgtattacatagaggcactaacc
cttaacgggcacaaacgaaggacgtctctgccagtgggcctgttaggaga
catgcgcaacatccagccttggccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61288673_61289817
seq2: B6Ng01-254D22.g_70_1245

seq1  GAATTCTGACATATACTGAAAAACATCTAAGACTTCCAACCTTGAGGACT  50
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  GAATTCAGACATATACTGAAAAACAGCTAAGACTTCCAACCTTGAGGACT  50

seq1  GAAAAATTAATGAATTCTTGGTATTTCTGTTAGTAGATTAGCTGAACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAATGAATTCTTGGTATTTCTGTTAGTAGATTAGCTGAACTAT  100

seq1  ATAGTCTGTAAGCCATTCTAATAAACAATTCACATACATGCTGTAAGGTT  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAGTCTGTAAGCCATTCTAATAAACAATTCACACACATGCTGTAAGGTT  150

seq1  TTCTCTTCTAGAGAACCCCACCTAACACAATACCACAGAGGAATTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTAGAGAACCCCACCTAACACAATACCACAGAGGAATTTACAT  200

seq1  TTAATTTGGAATGGGTAAGAAGTAATGAAGGCATTTGGAAAGGAACTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGGAATGGGTAAGAAGTAATGAAGGCATTTGGAAAGGAACTGGA  250

seq1  ATAGGAAAAATGTGTGATGCCACATAAGATGAGACAAAATGTCTAACCCA  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAGGAAAAATGTGTGATGCCGCATAAGATGAGACAAAATGTCTAACCCA  300

seq1  AAAGGACCAATAACAGTTTCCTATGGAGAACGAGCTCAGACTATCTAAGG  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGGACCAATAACAGTTTCCTATGGAGAAAGAGCTCAGACTATCTAAGG  350

seq1  TAACTTCAGTAGAAGAATCTAAGCTTGGAGATAGGGGTTTAGCCTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAGTAGAAGAATCTAAGCTTGGAGATAGGGGTTTAGCCTGCTGG  400

seq1  CCGTGAGTGGTAACTTGGTTATCGTGACACCATAGGTTCAATCCTTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAGTGGTAACTTGGTTATCGTGACACCATAGGTTCAATCCTTAGCA  450

seq1  GTTGAAGAACAAAAGAATATGACTCACAGATTAAAAGACTAGTAACCAAA  500
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTGAAGAACAAAAGAATATAACTCACAGATTAAAAGACTAGTAACCAAA  500

seq1  GGTTTTCATTGTAAGGTTAGCTTGAAACATTTGTAATGAAAAATGAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCATTGTAAGGTTAGCTTGAAACATTTGTAATGAAAAATGAGATT  550

seq1  AATCTTTTAAAGTAGATTAACAATGGGTCCTTTGTAGATGGAGTTACAGA  600
      |||||||||||||||||||||||||| ||||||| || ||||||||||||
seq2  AATCTTTTAAAGTAGATTAACAATGGATCCTTTGGAGCTGGAGTTACAGA  600

seq1  TGGTTGTAAGCCACCATGTGGGTGCGATAAACCAAACCTAAGTCCTCAGA  650
      |||||||  |||||||||||||||| ||||||||||||||||||||| ||
seq2  TGGTTGTGGGCCACCATGTGGGTGCCATAAACCAAACCTAAGTCCTCGGA  650

seq1  CGGAACAGCCTGTGCTTTTAACTGATGATGCATCTCTCCAGTCCCCTGAT  700
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGCCTGTGCTTTTAACTGATGATGCATCTCTCCAGTCCCCTGAT  700

seq1  TTGTTATTTATATTTATTTGCTATTTGTATGTTTTTAGATTTATTTTATG  750
      ||||||||||| |||||||||||||| || ||||||||||||||||||||
seq2  TTGTTATTTATTTTTATTTGCTATTTATACGTTTTTAGATTTATTTTATG  750

seq1  TGTATAAGTGTTTTGGCTGCATGTATGTCTATCACATACATGACTCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGTGTTTTGGCTGCATGTATGTCTATCACATACATGACTCATCC  800

seq1  CTGA-GGAGTCAGAAAAAGGTCCCAGATCTTCTAGAACT-GGAGGTGTAG  848
      |||| |||||||||||||||| ||||||||||| ||||| ||||||||||
seq2  CTGAGGGAGTCAGAAAAAGGTGCCAGATCTTCTGGAACTGGGAGGTGTAG  850

seq1  ATTGTTGTGAGCTATCACGTGT-ATGCT-GGAAACTGAATTCAGG-TCTT  895
      |||||||||||||||||||||| ||||| ||||| |||||||||| || |
seq2  ATTGTTGTGAGCTATCACGTGTAATGCTGGGAAAATGAATTCAGGTTCGT  900

seq1  ATGTGA-GGGCATCAAGTGCTC-TTAACACTGAG-CTACCTCTCCAGAC-  941
      |||||| |||| |||||||||| ||||||||||| |||||||||||||| 
seq2  ATGTGAGGGGCCTCAAGTGCTCTTTAACACTGAGCCTACCTCTCCAGACT  950

seq1  TCAATTTTTCTA-TTTTTAAAAGGGACT-ATAA-TGAGCAC--ATGTTCT  986
      |||||||||||| ||||||||||||||| |||| |||||||   |||  |
seq2  TCAATTTTTCTATTTTTTAAAAGGGACTAATAATTGAGCACCATTGTCTT  1000

seq1  GTGCTATAACTC-TCCAG-----CTACTCGCTTCAAATTATACATACAAA  1030
      |||||||||||| |||||     || |||  | |||||||||||||| ||
seq2  GTGCTATAACTCTTCCAGCCTACCTCCTCCTTCCAAATTATACATACCAA  1050

seq1  TGTAAT-ATACATACAAAT-GTAAT-ATGTA-TACATAGA-GCACAAACC  1075
      |||| | |||| ||||||| ||||| ||||| |||||||| |||| ||||
seq2  TGTATTAATACTTACAAATGGTAATAATGTATTACATAGAGGCACTAACC  1100

seq1  --TAACAGGCACAAACAGAGGACGCCCCTG-CAGTGGGGCTG-TAGGAGA  1121
        |||| |||||||||  |||||| | ||| ||||||| ||| |||||||
seq2  CTTAACGGGCACAAACGAAGGACGTCTCTGCCAGTGGGCCTGTTAGGAGA  1150

seq1  CA-GTGCCACACTCAG-CTTGGCCAG  1145
      || | || |||  ||| |||||||||
seq2  CATGCGCAACATCCAGCCTTGGCCAG  1176