BAC Information

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BAC

Clone NameB6Ng01-254J11
Chromosome4 (Build37)
Map Location 27,350,427 - 27,520,836
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254J11.bB6Ng01-254J11.g
ACCGA061018GA061019
length9191,035
definitionB6Ng01-254J11.b B6Ng01-254J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,520,318 - 27,520,836)(27,350,427 - 27,351,462)
sequence
gaattctaggtttttctttggtggtttgtaaagaacattttactgcataa
attaacatttctagcaataaaggtattttcagagtattatttctgcccat
ctatgagaatagaacttttttttcttttttttccatttttttattaggta
tttagctcatttacatttccaatgctataccaaatgtcccccatacccac
ccacccccccaatcccttacccacccatccccctttttggccctggtgtt
cccctgtactggggcatataaagtttgcaagcccaatgggcaactctttg
cagtgatggccgactaggccattttttgatacatatgcagctagagacaa
gagctccggggtactgcttagttcatattgttgttccacctatagggttg
cagttccctttagttccttgggtgctttctctagttcctccattgggggc
cctgtggtccattcaatagctgactgtgagcatccacttctgtgtttgct
aggccctggcatagtctcacaagaaacagctatatctgggtcctttcagc
aaaatcttgctagtgtatgcaatggtgtcaaggtttggaagctgatcatg
ggatggatctctggatatggcaatcactagatggtccatccttttgtcac
acttccaaatttttgtctctgtaactccttccatgggtgttttgtttcct
attctaagaaggggcaaagtgaccacactttggtcttctttctcttgagt
ttaatgtgtttagcaaattatatcttatatcttgggtatcctaagttatc
tgggctaatatccacatatcagtgagtacatattgtgagagtttcctttg
tgattgggtttacctcactcagggtgatggccctccatgtcttatttcat
tctattcttatctacctat
gaattcaaagcaggagccagtacacaagaacagaaacagacaccaagata
ccccaaagaacctctgtttactgggtttgtccctgtggcatgctcaacat
gttctcttataccaccgagaagcactggactagaggttgtacagcccact
tgtatgccctacatacttgttcagaaggaatctaatgaagacaatttttc
agttgacttacagtcatataatattcttcagcactgtcttagttgtagtc
acctgggcagatgccattttgaatatttatgtgcactcggtagcaggact
ttacctatccaatctatttcagtataagcgaaacaggaagcctgtgattg
tacacggaaaagggaggcagagctaagagttggggaggcagagaagacag
gagagaaggaggagaagccgagatgtaggggaatggacaggaagaagatt
ctgatcctgaaagattttaaatagtcacaggtagttgtgactgtcatata
ggaataaaataattgggataacttgtctgatccaggtgggcagcttgtat
cattatcaattggctctgaaattattgtgtgggaatattgtgaattgaga
atgtattgatgcataaaactgacttgttagttataagcttctagagtttt
gttttactgggttactggaaggttggaccactgaccacagtgggtctatg
tctgagaaggaactagtggttgaaagtgaaccagagctgggcatacggtg
acaggtcactgcgtgggggctagctagagacagcctgcaggactgaatct
gggcaaagagtggctggcagtactgtgggaatcctgccattcatttttaa
tattcccgcaacacactctcctgctgtatatgatttcatagatagtttga
tactgtaatatctttcacaatccaaattatatgttttcaatatttttgag
tttttaaaaaatttatccgtgtgtgtgtgtgtgtgtgatggtgtgcgcgt
aatcaccatattgtgtgaaggtactggtttatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27520318_27520836
seq2: B6Ng01-254J11.b_438_961 (reverse)

seq1  ATAGGTAGATAAGAATAGAATGAAATAAGACCTGGAGGG-CATCACCCTG  49
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  ATAGGTAGATAAGAATAGAATGAAATAAGACATGGAGGGCCATCACCCTG  50

seq1  AGTGAGGT-AACCCAATCACAAAGG-AACTCTCACAATATGTACTCACTG  97
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  AGTGAGGTAAACCCAATCACAAAGGAAACTCTCACAATATGTACTCACTG  100

seq1  ATAAGTGGATATTAGCCCAGA-AACTTAGGATACCCAAGATATAAGATAT  146
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATGTGGATATTAGCCCAGATAACTTAGGATACCCAAGATATAAGATAT  150

seq1  AATTTGCTAAACACATTAAACTCAAGAGAAAGAAGACCAAAGTGTGGACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTTGCTAAACACATTAAACTCAAGAGAAAGAAGACCAAAGTGTGGTCA  200

seq1  CTTTGCCCCTTCTTAGAATAGGAAACAAAACACCCATGGAAGGAGTTACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCCCTTCTTAGAATAGGAAACAAAACACCCATGGAAGGAGTTACA  250

seq1  GAGAC-AAAATTTGGAAGTGTGACAAAAGGATGGACCATCTAGTGATTGC  295
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAAATTTGGAAGTGTGACAAAAGGATGGACCATCTAGTGATTGC  300

seq1  CATATCCAGAGATCCATCCCATGATCAGCTTCCAAACCTTGACACCATTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCAGAGATCCATCCCATGATCAGCTTCCAAACCTTGACACCATTG  350

seq1  CATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTTTCTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTTTCTTG  400

seq1  TGAGACTATGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTATGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG  450

seq1  CTATTGAATGGACCACAGGGCCCCCAATGGAGGAACTAGAGAAAGCACCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAATGGACCACAGGGCCCCCAATGGAGGAACTAGAGAAAGCACCC  500

seq1  AAGGAACTAAAGGGAACTGCAACC  519
      ||||||||||||||||||||||||
seq2  AAGGAACTAAAGGGAACTGCAACC  524

seq1: chr4_27350427_27351462
seq2: B6Ng01-254J11.g_68_1102

seq1  GAATTCAAAGCAGGAGCCAGTACACAAGAACAGAAACAGACACCAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAGGAGCCAGTACACAAGAACAGAAACAGACACCAAGATA  50

seq1  CCCCAAAGAACCTCTGTTTACTGGGTTTGTCCCTGTGGCATGCTCAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGAACCTCTGTTTACTGGGTTTGTCCCTGTGGCATGCTCAACAT  100

seq1  GTTCTCTTATACCACCGAGAAGCACTGGACTAGAGGTTGTACAGCCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTATACCACCGAGAAGCACTGGACTAGAGGTTGTACAGCCCACT  150

seq1  TGTATGCCCTACATACTTGTTCAGAAGGAATCTAATGAAGACAATTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCCCTACATACTTGTTCAGAAGGAATCTAATGAAGACAATTTTTC  200

seq1  AGTTGACTTACAGTCATATAATATTCTTCAGCACTGTCTTAGTTGTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACTTACAGTCATATAATATTCTTCAGCACTGTCTTAGTTGTAGTC  250

seq1  ACCTGGGCAGATGCCATTTTGAATATTTATGTGCACTCGGTAGCAGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCAGATGCCATTTTGAATATTTATGTGCACTCGGTAGCAGGACT  300

seq1  TTACCTATCCAATCTATTTCAGTATAAGCGAAACAGGAAGCCTGTGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCCAATCTATTTCAGTATAAGCGAAACAGGAAGCCTGTGATTG  350

seq1  TACACGGAAAAGGGAGGCAGAGCTAAGAGTTGGGGAGGCAGAGAAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGGAAAAGGGAGGCAGAGCTAAGAGTTGGGGAGGCAGAGAAGACAG  400

seq1  GAGAGAAGGAGGAGAAGCCGAGATGTAGGGGAATGGACAGGAAGAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGGAGGAGAAGCCGAGATGTAGGGGAATGGACAGGAAGAAGATT  450

seq1  CTGATCCTGAAAGATTTTAAATAGTCACAGGTAGTTGTGACTGTCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTGAAAGATTTTAAATAGTCACAGGTAGTTGTGACTGTCATATA  500

seq1  GGAATAAAATAATTGGGATAACTTGTCTGATCCAGGTGGGCAGCTTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAAATAATTGGGATAACTTGTCTGATCCAGGTGGGCAGCTTGTAT  550

seq1  CATTATCAATTGGCTCTGAAATTATTGTGTGGGAATATTGTGAATTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCAATTGGCTCTGAAATTATTGTGTGGGAATATTGTGAATTGAGA  600

seq1  ATGTATTGATGCATAAAACTGACTTGTTAGTTATAAGCTTCTAGAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGATGCATAAAACTGACTTGTTAGTTATAAGCTTCTAGAGTTTT  650

seq1  GTTTTACTGGGTTACTGGAAGGTTGGACCACTGACCACAGTGGGTCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTGGGTTACTGGAAGGTTGGACCACTGACCACAGTGGGTCTATG  700

seq1  TCTGAGAAGGAACTAGTGGTTGAAAGTGAACCAGAGCTGGGCATACGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAGGAACTAGTGGTTGAAAGTGAACCAGAGCTGGGCATACGGTG  750

seq1  ACAGGTCACTGCGTGGGGGCTAGCTAGAGACAGCCTGCAGGACTGAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCACTGCGTGGGGGCTAGCTAGAGACAGCCTGCAGGACTGAATCT  800

seq1  GGGCAAAGAGTGGCTGGCAGTACTGTGGGAATCCTGCCATTCATTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGAGTGGCTGGCAGTACTGTGGGAATCCTGCCATTCATTTTTAA  850

seq1  TATTTCCCGCAACACACTCTCCTGCTGTATATGATTTTCATAGATAGTTT  900
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TA-TTCCCGCAACACACTCTCCTGCTGTATATGA-TTTCATAGATAGTTT  898

seq1  GATACTGTAATATCTTTCAC-ATCCAAATTATATGTTTTCAATATTTTTG  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GATACTGTAATATCTTTCACAATCCAAATTATATGTTTTCAATATTTTTG  948

seq1  AGTTTTTAAAAAATTTATCCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGC  999
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  AGTTTTTAAAAAATTTATCCGTGTGTGTGTGTGTGTGTGATGGTGTGCGC  998

seq1  GTAATCACCATATTGTGTTGAAGGTACT-GTTTATTTC  1036
      ||||||||||||||||| |||||||||| |||||||||
seq2  GTAATCACCATATTGTG-TGAAGGTACTGGTTTATTTC  1035