BAC Information

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BAC

Clone NameB6Ng01-254J13
Chromosome4 (Build37)
Map Location 142,135,696 - 142,278,940
singlet/doubletdoublet
Overlap geneLOC546484
Upstream geneFblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
Downstream gene6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254J13.bB6Ng01-254J13.g
ACCGA061022GA061023
length1,159586
definitionB6Ng01-254J13.b B6Ng01-254J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,277,772 - 142,278,940)(142,135,696 - 142,136,278)
sequence
gaattctcctttatgcaaatgaagcattcccagtactcggccccagccaa
tagtgtacacttatcctccaacccctacccagtccccaaggcttatatgg
cccttatttcccccaataaaggattgctgtttcactggaagtccccggag
aagaatctttcgccccagtactcaagtcaactgagatcccaagaacccac
cccacccagacaagctgcatttcttccattctgcctggtgcgtaacagtc
ccggaatgtgcagagaccagaaggcgagccagccagaacatcataggaac
ccatgaaataatgttggaccaaatatctgggcatcccgtggcctagtcaa
gtccacccataaaatgaatcaacataagaaaaacaacttttgtcagaaag
tgtgggttttaccctcttcttatgagttttcctctgaccttaacttcttg
tcataattaacaaagctccacctggtatgaaatgggaacactcccgagac
acgtacccggctcatgctgctaatctgcacagccatcccacgcccttccc
tgtagaattccttcactgtggttgactggggaattttgccttccactaga
cacatgctttcagttgctggctcactggaagccgtgtctcatttattctt
gggtcccttgtgccctatagcaatactttgcatctagaagatatttagaa
actatttgtgaactgggatacagagctatatatttctttctagaaggtta
cacaaccaagtttggttaatctccagatcgtggaaaatgtttaagtttct
acttctcttaagctggtggagtgagaggctggggtaccagtgggagtcag
ataatgtgggttcagaccctgacatcaacagacatggagtgacctcagac
gattcttccaagccttttctgagcctcagagtctttatctcctatataga
aaaaaaaatgtgtgagtctcagtgccaagtctgcattacttcagagacac
tgctgtgggtggtctgatctggttttatataattgtagatgacagagcac
aggcacctgcttttacctctagccatgagtttccgctgcctctgcagagt
ccttccggactctctgagtcaatgcggaagcagtctgtggtttattcgat
gtgccgatc
gaattcctgttccccggtttcttaatattcccgttgctgtatgtgagcag
ttaaaatgaagagagagagagagagagagagagagagagagagagagaga
gaatgatctagcaagttaaggttttctctctctacctcaatttctatttt
tcatcaacataaaagagggaagttctagggtgatggctcagtggggaagg
gacttcccatgcaagcatgagatcctgagttcggatccccagcacccatg
caaaatatgggtgtggtcacacatgtctataacctcaacttctccagagt
gaggtgacagatgacaggaggatcaccagagaggctttagggccaactag
cataccttgaagtgaagacatccacctgggattgtccttggaccacacac
acccagtagtacatgtgtgtctacagatatacatgaaacacacacataca
cacatacacattacacacacatatgcacgcaatattttttttttttaaaa
aataggagggataacacatgtctcttctgagtgacattgaacatgtggct
gtgaaggactggtgagcatgggttgggggaggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142277772_142278940
seq2: B6Ng01-254J13.b_49_1207 (reverse)

seq1  GATCGGCAACTTCAGAATAAACCACAGAACTGGCTTCTCCCGCCATGACT  50
      ||||||| || || ||||||||||||||     || || ||||  |||||
seq2  GATCGGC-ACATC-GAATAAACCACAGA-----CTGCTTCCGCATTGACT  43

seq1  CAGAGAGTCCCGAGAGACTCTGCAGGAGGCAGCGAAACCTTCATGGCTAG  100
      |||||||||| ||  ||||||||| ||||||||| || | ||||||||||
seq2  CAGAGAGTCCGGAAGGACTCTGCA-GAGGCAGCGGAAAC-TCATGGCTAG  91

seq1  AGGTAAAAAGCAGGTGCCTTGTGCTCTGTCATCTACAAATTATATAAAAC  150
      |||| ||||||||||||| ||||||||||||||||| |||||||||||||
seq2  AGGT-AAAAGCAGGTGCC-TGTGCTCTGTCATCTAC-AATTATATAAAAC  138

seq1  CAGATCAGACCACCCACAGCAGTGTCTCTGAAGTAATGCAGACTTGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGACCACCCACAGCAGTGTCTCTGAAGTAATGCAGACTTGGCAC  188

seq1  TGAGACTCACACA-TTTTTTTTCTATATAGGAGATAAAGACTCTGAGGCT  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCACACATTTTTTTTTCTATATAGGAGATAAAGACTCTGAGGCT  238

seq1  CAG-AAAGGCTTGGAAGAATCGTCTGAGGTCACTCCATGTCTGTTGATGT  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGGCTTGGAAGAATCGTCTGAGGTCACTCCATGTCTGTTGATGT  288

seq1  CAGGGTCTGAACCCACATTATCTGACTCCCACTGGTACCCCAGCCTCTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTGAACCCACATTATCTGACTCCCACTGGTACCCCAGCCTCTCA  338

seq1  CTCCACCAGCTTAAGAGAAGTAGAAACTTAAACATTTTCCACGATCTGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAGCTTAAGAGAAGTAGAAACTTAAACATTTTCCACGATCTGGA  388

seq1  GATTAACCAAACTTGGTTGTGTAACCTTCTAGAAAGAAATATATAGCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACCAAACTTGGTTGTGTAACCTTCTAGAAAGAAATATATAGCTCT  438

seq1  GTATCCCAGTTCACAAATAGTTTCTAAATATCTTCTAGATGCAAAGTATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCAGTTCACAAATAGTTTCTAAATATCTTCTAGATGCAAAGTATT  488

seq1  GCTATAGGGCACAAGGGACCCAAGAATAAATGAGACACGGCTTCCAGTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGGGCACAAGGGACCCAAGAATAAATGAGACACGGCTTCCAGTGA  538

seq1  GCCAGCAACTGAAAGCATGTGTCTAGTGGAAGGCAAAATTCCCCAGTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAACTGAAAGCATGTGTCTAGTGGAAGGCAAAATTCCCCAGTCAA  588

seq1  CCACAGTGAAGGAATTCTACAGGGAAGGGCGTGGGATGGCTGTGCAGATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGAAGGAATTCTACAGGGAAGGGCGTGGGATGGCTGTGCAGATT  638

seq1  AGCAGCATGAGCCGGGTACGTGTCTCGGGAGTGTTCCCATTTCATACCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATGAGCCGGGTACGTGTCTCGGGAGTGTTCCCATTTCATACCAG  688

seq1  GTGGAGCTTTGTTAATTATGACAAGAAGTTAAGGTCAGAGGAAAACTCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCTTTGTTAATTATGACAAGAAGTTAAGGTCAGAGGAAAACTCAT  738

seq1  AAGAAGAGGGTAAAACCCACACTTTCTGACAAAAGTTGTTTTTCTTATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGGGTAAAACCCACACTTTCTGACAAAAGTTGTTTTTCTTATGT  788

seq1  TGATTCATTTTATGGGTGGACTTGACTAGGCCACGGGATGCCCAGATATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATTTTATGGGTGGACTTGACTAGGCCACGGGATGCCCAGATATT  838

seq1  TGGTCCAACATTATTTCATGGGTTCCTATGATGTTCTGGCTGGCTCGCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAACATTATTTCATGGGTTCCTATGATGTTCTGGCTGGCTCGCCT  888

seq1  TCTGGTCTCTGCACATTCCGGGACTGTTACGCACCAGGCAGAATGGAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTCTGCACATTCCGGGACTGTTACGCACCAGGCAGAATGGAAGA  938

seq1  AATGCAGCTTGTCTGGGTGGGGTGGGTTCTTGGGATCTCAGTTGACTTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCTTGTCTGGGTGGGGTGGGTTCTTGGGATCTCAGTTGACTTGA  988

seq1  GTACTGGGGCGAAAGATTCTTCTCCGGGGACTTCCAGTGAAACAGCAATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGGCGAAAGATTCTTCTCCGGGGACTTCCAGTGAAACAGCAATC  1038

seq1  CTTTATTGGGGGAAATAAGGGCCATATAAGCCTTGGGGACTGGGTAGGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGGGGGAAATAAGGGCCATATAAGCCTTGGGGACTGGGTAGGGG  1088

seq1  TTGGAGGATAAGTGTACACTATTGGCTGGGGCCGAGTACTGGGAATGCTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGATAAGTGTACACTATTGGCTGGGGCCGAGTACTGGGAATGCTT  1138

seq1  CATTTGCATAAAGGAGAATTC  1169
      |||||||||||||||||||||
seq2  CATTTGCATAAAGGAGAATTC  1159

seq1: chr4_142135696_142136278
seq2: B6Ng01-254J13.g_72_656

seq1  GAATTCCTGTTCCCCGGTTTCTTAATATTCCCGTTGCTGTATGTGAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCCCCGGTTTCTTAATATTCCCGTTGCTGTATGTGAGCAG  50

seq1  TTAAAATGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100

seq1  GAATGATCTAGCAAGTTAAGGTTTTCTCTCTCTACCTCAATTTCTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATCTAGCAAGTTAAGGTTTTCTCTCTCTACCTCAATTTCTATTTT  150

seq1  TCATCAACATAAAAGAGGGAAGTTCTAGGGTGATGGCTCAGTGGGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAACATAAAAGAGGGAAGTTCTAGGGTGATGGCTCAGTGGGGAAGG  200

seq1  GACTTCCCATGCAAGCATGAGATCCTGAGTTCGGATCCCCAGCACCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCCATGCAAGCATGAGATCCTGAGTTCGGATCCCCAGCACCCATG  250

seq1  CAAAATATGGGTGTGGTCACACATGTCTATAACCTCAACTTCTCCAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATGGGTGTGGTCACACATGTCTATAACCTCAACTTCTCCAGAGT  300

seq1  GAGGTGACAGATGACAGGAGGATCACCAGAGAGGCTTTAGGGCCAACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACAGATGACAGGAGGATCACCAGAGAGGCTTTAGGGCCAACTAG  350

seq1  CATACCTTGAAGTGAAGACATCCACCTGGGATTGTCCTTGGACCACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTGAAGTGAAGACATCCACCTGGGATTGTCCTTGGACCACACAC  400

seq1  ACCCAGTAGTACATGTGTGTCTACAGATATACATGAAACACACACATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTAGTACATGTGTGTCTACAGATATACATGAAACACACACATACA  450

seq1  CACATACACATTACACACACATATGCACGCAATATTTTTTTTTTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACATTACACACACATATGCACGCAATATTTTTTTTTTTTAAAA  500

seq1  AATAGGAGGGATAACACATGTCTCTTCTGAGTGACATTG-ACATGTGGCT  549
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATAGGAGGGATAACACATGTCTCTTCTGAGTGACATTGAACATGTGGCT  550

seq1  GTGAAGGACTGGTGAGCATGGG-TGGGGGAGGGGA  583
      |||||||||||||||||||||| ||||||||||||
seq2  GTGAAGGACTGGTGAGCATGGGTTGGGGGAGGGGA  585