BAC Information

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BAC

Clone NameB6Ng01-254J22
Chromosome4 (Build37)4 (Build37)
Map Location 146,994,236 - 146,994,863145,371,314 - 145,372,550
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik
Downstream geneLOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254J22.bB6Ng01-254J22.g
ACCGA061040GA061041
length6311,056
definitionB6Ng01-254J22.b B6Ng01-254J22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,994,236 - 146,994,863)(145,371,314 - 145,372,550)
sequence
gaattcactctgtagacctggctggccttgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcatgcaccaccaccgcctgcct
tactatcacttgctatatcaaatatttttaaagtagacaaaggtcaaata
gctatatgtagtagtcagacaaggccataaccttctcatctgtggggaat
tgcaggctggtctccagtcgagctgaggtctaaacccaggtggtcataat
tcacctacatgacacggtaggcattccctcatgctcctggaactcaggcc
cctgcataaggcacaacctcccacagcccccacaagagaagcatggtcag
tagtcaagtaagcaatggcccaagcttctgaccttcaggctaaactcctc
cccagttacctagcaacagtgaagaccataaaaaggtgtgctcagtcccc
accttgctctctcactcctttgtcctctaacctctcacttctctcttctt
ttccctttctctttgtcttctctctcctttatctttgttctctcctctcc
tctactatccttctcctccctcccctcccctcccctcccctcctctctct
ctctctctctctctctctctctctctctctc
gaattccaggaagcttttgaattttgggcgggtccagaaggcggcgctag
gcagaaagaagggaagttcggcggtttcatctttcttcttgcatctcggc
tgcctcgtggtcaggaagtcatggagggagactagcgcctagtatttgcg
gtgcctgaaaacttccttaagctgcagttgttgtgctggcctcctaggac
attgagcagctggtcttgtcaccttccaggtcagaggagctgttggactg
gggaacgggcaggagctgggcagcggtgtggagcaggggtgcattttctg
ccgccactctcacaattctgttgtggataccttaccattgtcaggaagtt
tgagatcctgtgaattggtttcatggtgatgctttaatcaattttatggt
tgccagaatatttttctaaaatatcctcggacatccttggctgcatctgg
agtttgtatacccggaggtttgcctttgcaaaagcctttataaagctcct
gtaattcaaattcgttcatgctttcttaactcccctgttcctccatttgc
catttcatttccctttctccagggaactgagtaggcatcctgagagagct
ttgtaagcatttgtcatatagggaccagtgcagatttgattgaattcgaa
aatatttgttataaagtatctttgaaagacccaaaacgggaggcctctcc
cacgttctgactcaggagaggcgacactccaaatcacttgcaagaaaggg
tcttgatgcaaattgcaagaggacttttatttcaagagagctctcaggtc
catattcatacaccatgcagggctagcggactgtggtgtgcagagtagct
gggtaaaggggtattttaaaggaagaaaccataagtcaagcgggtgggag
ggcgttgttggaaaataccaaagtaccagttaagtggaaagtcaagacag
ttgtctatgagtctcagtacaatagcacatttgcacagtgagtcctggag
tgtcaaggtgggtccaggtgactttcttggccagaaattttttctaatat
cctcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146994236_146994863
seq2: B6Ng01-254J22.b_47_677

seq1  GAATTCACTCTATAGACCTGGCTGGCCTCGAACTCAGGAATCCGCTTGCC  50
      ||||||||||| |||||||||||||||| |||||||| ||||||| ||||
seq2  GAATTCACTCTGTAGACCTGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCAACACCACCGCCTGGCT  100
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACCGCCTGCCT  100

seq1  TACTATCACTTGCTATATCAAATATTTTTAAAGTAGACAAAGGTCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCACTTGCTATATCAAATATTTTTAAAGTAGACAAAGGTCAAATA  150

seq1  GCTATATGTATTGGTCAGACAAGGCCATAACCTTCTCATCTGTGGGGAAT  200
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GCTATATGTAGTAGTCAGACAAGGCCATAACCTTCTCATCTGTGGGGAAT  200

seq1  TGCAGGCTGGTCTCCAGTCGAGCTGAGGTCTGAACCCCGATGGTCATAAT  250
      ||||||||||||||||||||||||||||||| ||||| | ||||||||||
seq2  TGCAGGCTGGTCTCCAGTCGAGCTGAGGTCTAAACCCAGGTGGTCATAAT  250

seq1  TCACCTACATGACACAGTAGGCATTCCCTCATGCTCCTGGAACTCAGGCC  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCACCTACATGACACGGTAGGCATTCCCTCATGCTCCTGGAACTCAGGCC  300

seq1  CCTGCATAAGGCACAACCTCCCACAGCCCCCACAAGAGAAGCATGGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATAAGGCACAACCTCCCACAGCCCCCACAAGAGAAGCATGGTCAG  350

seq1  TAGTCAAGTAAGCAATGGCCCAAGCTTCTGACCTTCAGGCTAAACTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGTAAGCAATGGCCCAAGCTTCTGACCTTCAGGCTAAACTCCTC  400

seq1  CCCAGTTACCTAGCAACAGTGAAGACCATAAAAAGGTGTGCTCAGCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCAGTTACCTAGCAACAGTGAAGACCATAAAAAGGTGTGCTCAGTCCCC  450

seq1  ACCTTGCTCTCTCTCACTCCTTTGTCCTCTAACCTCTCACTTCTCTCTTC  500
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTG--CTCTCTCACTCCTTTGTCCTCTAACCTCTCACTTCTCTCTTC  498

seq1  TTTTCCCTTTCTCTGTCTTCTCTCTCCTCTCTCCTTTATCTTTGTTCTCT  550
      |||||||||||||     | | ||| ||||||||||||||||||||||||
seq2  TTTTCCCTTTCTC-----TTTGTCTTCTCTCTCCTTTATCTTTGTTCTCT  543

seq1  CCTCTCCTCTACTATCCTTCTCCT----------CCCTCCCCTCCTCTTC  590
      ||||||||||||||||||||||||          ||||||||||| || |
seq2  CCTCTCCTCTACTATCCTTCTCCTCCCTCCCCTCCCCTCCCCTCCCCTCC  593

seq1  TCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTCTCTC  628
      |||||||||||||||||| ||||||| |||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  631

seq1: chr4_145371314_145372550
seq2: B6Ng01-254J22.g_70_1125

seq1  GAATTCCAGGAAGCTGTTGAATTTTGGGCGGGTCCAGAAGGCGGCGCTAG  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAGCTTTTGAATTTTGGGCGGGTCCAGAAGGCGGCGCTAG  50

seq1  GCAGAAAGAAGGGAAGTTCCGCGGTTTCATCTTTCTTCTTGCATCTCGGC  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCAGAAAGAAGGGAAGTTCGGCGGTTTCATCTTTCTTCTTGCATCTCGGC  100

seq1  TGCCTCGTGATCAGGAAGTCATGGAGGGAGACTAGTGCCTAGTATTTGCG  150
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  TGCCTCGTGGTCAGGAAGTCATGGAGGGAGACTAGCGCCTAGTATTTGCG  150

seq1  GTGCCTGAAAACTTTCTTAAGAAGCAGTTGTTTTGCTGGCCTCCTAGGAC  200
      |||||||||||||| ||||||  ||||||||| ||||||           
seq2  GTGCCTGAAAACTTCCTTAAGCTGCAGTTGTTGTGCTGG-----------  189

seq1  ATCCAGGAGCTGGTCCTGTCATCTTCCAGGTTAGAGGAGCTGTTGGACTA  250
                                                        
seq2  --------------------------------------------------  189

seq1  GGAACCCGGCAGGAGCTGGGCAGCGGTGTGGAGCAGGGGTGCCTTTTCTG  300
                                                        
seq2  --------------------------------------------------  189

seq1  CCGCCATTCTCACAATTCAGTATTTGCGGAACCTGAAAACTTCCTTAAGC  350
                                                        
seq2  --------------------------------------------------  189

seq1  TGCCGTTGCTCCTCCTAGGACATTCAGCAGCTGATCCTGTCACCTTCTAG  400
                |||||||||||||| |||||||| || |||||||||| ||
seq2  ----------CCTCCTAGGACATTGAGCAGCTGGTCTTGTCACCTTCCAG  229

seq1  GTCAGAGGAGCTGTTGGACTGGGAAATGGGCAGGAGCTGGGCAGGTGTGT  450
      ||||||||||||||||||||||| || |||||||||||||||||  ||||
seq2  GTCAGAGGAGCTGTTGGACTGGGGAACGGGCAGGAGCTGGGCAGCGGTGT  279

seq1  GGAGCAGGGGTACATTTTCTGCCGCCACTCTCACAATTCTGTTGTGGATA  500
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGGTGCATTTTCTGCCGCCACTCTCACAATTCTGTTGTGGATA  329

seq1  TCTTACCATTATCAGGAAGTTTGAGATCCTGTGAATTGGGTTCATGGTGA  550
       ||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  CCTTACCATTGTCAGGAAGTTTGAGATCCTGTGAATTGGTTTCATGGTGA  379

seq1  TGCTTTAATCAATTTTATGGTTGCCAGAATATTTTTCTAAAATATCCTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAATCAATTTTATGGTTGCCAGAATATTTTTCTAAAATATCCTCG  429

seq1  GAGATCCTTGGCTGCATCTGGAGTTTGTATACCGGGAGGTTTGCCTTTGC  650
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACATCCTTGGCTGCATCTGGAGTTTGTATACCCGGAGGTTTGCCTTTGC  479

seq1  AAAAGCCTTCATAAAGCTCCTTTAATTCAAATTCGTTCATTCTTTCTTAA  700
      ||||||||| ||||||||||| |||||||||||||||||| |||||||||
seq2  AAAAGCCTTTATAAAGCTCCTGTAATTCAAATTCGTTCATGCTTTCTTAA  529

seq1  CTCCCCTGTTCCTCCATTTGCCATTTCATTTCCCTTTCTCCAGGGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGTTCCTCCATTTGCCATTTCATTTCCCTTTCTCCAGGGAACTG  579

seq1  AGTAGGCATTCTGAGAGAGCTTTGTAAGCATTTGTCATATAGGGACCAGT  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCATCCTGAGAGAGCTTTGTAAGCATTTGTCATATAGGGACCAGT  629

seq1  GCAGATTTGATTGAATTCGAAAATATTCGTTATAAAGTATCTTTGAAAGA  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCAGATTTGATTGAATTCGAAAATATTTGTTATAAAGTATCTTTGAAAGA  679

seq1  CCCAAAACGTGAGGACTCTCCCAGGTTCTGACTCAGGAGAGGCGACATTC  900
      ||||||||| |||| |||||||| ||||||||||||||||||||||| ||
seq2  CCCAAAACGGGAGGCCTCTCCCACGTTCTGACTCAGGAGAGGCGACACTC  729

seq1  CAGATCACTTGCAAGAAAGGGTCTTGATGCAAATTGTAAGAGGACTTTTA  950
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAATCACTTGCAAGAAAGGGTCTTGATGCAAATTGCAAGAGGACTTTTA  779

seq1  TTTCAAGAGAGCTCTCAGGTCCACATTCATACACCATGCAGGGCTAGAGG  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  TTTCAAGAGAGCTCTCAGGTCCATATTCATACACCATGCAGGGCTAGCGG  829

seq1  ACTGTGGTGTGCAGAGTAGCTGGGTAAGGGGGTA-TTTAAAGGAAGAAAC  1049
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  ACTGTGGTGTGCAGAGTAGCTGGGTAAAGGGGTATTTTAAAGGAAGAAAC  879

seq1  CATAAGTCAAGGGGATGGGGAGGGCATTGTTGGAAAATACCAAAAGTACA  1099
      ||||||||||| || | |||||||| ||||||||||||||| ||||||| 
seq2  CATAAGTCAAGCGGGT-GGGAGGGCGTTGTTGGAAAATACC-AAAGTACC  927

seq1  AGTTAAGTGGAAAGTCAAGACAGATGTCTATGAGTCTCAGTAACAATAGC  1149
      ||||||||||||||||||||||| ||||||||||||||||| |||||   
seq2  AGTTAAGTGGAAAGTCAAGACAGTTGTCTATGAGTCTCAGT-ACAAT---  973

seq1  AAGCACATTTGCACAGTGAGTTCCTGGAGTGGTCAGGGTGGGTCAAGGTG  1199
       ||||||||||||||||||| ||||||||| |||| |||||||| |||||
seq2  -AGCACATTTGCACAGTGAG-TCCTGGAGT-GTCAAGGTGGGTCCAGGTG  1020

seq1  ACTTTCTTTGCCAGAATATTTTTCTAAAATATCCTCGG  1237
      |||||||| |||||||  |||||||  |||||||||||
seq2  ACTTTCTTGGCCAGAAATTTTTTCT--AATATCCTCGG  1056