BAC Information

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BAC

Clone NameB6Ng01-254L04
Chromosome4 (Build37)
Map Location 91,689,410 - 91,690,539
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664840, LOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik
Downstream geneLOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254L04.bB6Ng01-254L04.g
ACCGA061097GA061098
length1,1591,151
definitionB6Ng01-254L04.b B6Ng01-254L04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttatggttcttcatttctattccattgatcttcctgcctgtc
tctgtaccaataccatgcagtttttaaatcactattgctttatagtacag
cttcaggtcagggaactgaaaagggagccataacaactgaaactaatgaa
attcaaaaaatcatcagatccatctaaaaaagtctatactcaagaaaact
tgggaaatctggatgaaatgaacagttttctagacagattccaggtacca
aagttaaatcaggatcagataaaccatccaaacagtcccatgaccacata
aaataatagcagtaatcattaaaagtctccaaaccaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaagcccaggatcagatggttttaatgaaa
aattctatcagacctccaaagaagacctaatactaattctcttaaaacta
ttccacaaagtagaaacagaaggaacactacctagttcattctatgaagc
cacaattatgcttatacttcaaacacacaaagacccaaataggaaagaga
acttcagaccaattcccttgtgaatatcgatgcaaaaatactcaataaaa
ttcttgcaaactgaatccaggaacacatcaaaacaatcatccatcatgat
caagtaggctttatctcaggaatgcagggatggttcaatacatggaaatc
tatcaatgtattccattatataaacacattcaaagaaaaaaaaaacacat
cccattagatgctgagaaagctttgacaaaatttaacacctctttatagt
aaaagtattggaaagatcaggaattcaaggtccgtaactaaacatagtaa
aagcagtatacagcaaaccagtagccaacatgaaactgaatggagaagaa
tcttgaaacaattcccattaaaatcagggatgagaacaaggcctgcccac
tctcctccctattttatttttagtactttgaagtcctagacagagcattg
acaaaagacgtcaaggataacaaattggaaagagagtcaaaaatatccac
ttttgcagatactaggtaccacaaattcacgagactcctactgatagact
gagaagtgctggattagtaccacagtcagtagtctccttatacaggaata
aacctgcct
gaattcagtgttgaaatctgacttctacatgcatgcatgagtacacaata
gagacagagagacagagacagagagacagaccaagagagacaaagacaga
gagagacagagacagagagaacagaaaaacaaagcatatttctggctttg
agggatagtgttccctgagtggagtgacaaatagaagtacatggcatgtg
acatgcagttaagaaatttaacagtagacatggggagcaaagggcataag
ctattggacaaagccagatcccagaaggttaataccattacaggaatgcc
aggcaagggaatggcaggcgaacaaattgtatatcaatagtatttacagt
aacagagagatacaggaaaaagagaatgcaaagcactttggctaataata
aagggaatgaaaaagtacagtaaaatgatgatgccattctgcaggggact
ctaagtaggaaatgtgacttagagtgaagtgttatatgtacacaaggagt
attctcaaaagctctgtctcatcaaaggggatttccaagtcatattttat
gatggctgtggataatagatagtgacaaacaagaaatatcaaagcatttc
taaattatgtaacaggcaactctatgactcataaagcaaaagatcatagg
taaaaaaaatgaccttatataccagaaaaatgcctgggaattaataggtt
gagaatgactggggtaaaatcctcatggcactgtttataaagtgcctgct
atgggtcaggcaccatcctatgaactttgtataacccaatgttcaaaaga
caaaatgtagatgggaaaaattattcactaccaagcatgataacctgagg
ttgatccctgggacctacatagtggaagaagagaacaacttctgctgttt
gtcttcttacctccataccacatgctgtagaatatatacataaaccccac
caccccataccaattatacatgcacaatactaccacattaagatacacca
attgaacatacattactaataccatccaggggaaaaaagcattattgaat
aatcttattcaactgggaaccttaaattcttaatgatataataccaaaaa
tcaaacatgtattgtatttgaatagtagtccacatgctattagtaaattg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91689410_91690539
seq2: B6Ng01-254L04.g_69_1219 (reverse)

seq1  TCAA-TTACTATTAGCATGTGACTTACTTATTC-AATAC-ATACATGTTT  47
      |||| |||||| |||||||||   ||| ||||| ||||| ||||||| ||
seq2  TCAATTTACTAATAGCATGTGGACTAC-TATTCAAATACAATACATG-TT  48

seq1  TAATTTTTTGTA-TATATCATTTAAGAA-TTAAG--TTCCAGTTGAAT-A  92
      | |||||| ||| ||||||| ||||||| |||||  | |||||||||| |
seq2  TGATTTTTGGTATTATATCA-TTAAGAATTTAAGGTTCCCAGTTGAATAA  97

seq1  GATTATTCA--TATGCTTTTT--CCCTGGATGTATTTAGT-ATGTATG-T  136
      |||||||||   |||||||||  |||||||||   ||||| ||||||| |
seq2  GATTATTCAATAATGCTTTTTTCCCCTGGATGGTATTAGTAATGTATGTT  147

seq1  CAATT-GTGTATCTTAATGT-GTAGTA-TGTGCATGTATA--TTGTAT--  179
      ||||| |||||||||||||| |||||| ||||||||||||  | ||||  
seq2  CAATTGGTGTATCTTAATGTGGTAGTATTGTGCATGTATAATTGGTATGG  197

seq1  -GTGTGTGTGTTTATGTATATATTCTACAGCATGT-GTATGGAGGTAAGA  227
       |||   | |||||||||||||||||||||||||| ||||||||||||||
seq2  GGTGGTGGGGTTTATGTATATATTCTACAGCATGTGGTATGGAGGTAAGA  247

seq1  AGAC-AACAGCAGAAGTTGTTCTCTTCTTCCACTATGTAGGTCCCAGGGA  276
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACAGCAGAAGTTGTTCTCTTCTTCCACTATGTAGGTCCCAGGGA  297

seq1  TCAACCTCAGGTTATCATGCTTGGTAGTGAATAATTTTTCCCATCTACAT  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTCAGGTTATCATGCTTGGTAGTGAATAATTTTTCCCATCTACAT  347

seq1  TTTGTCTTTTGAACATTGGGTTATACAAAGTTCATAGGATGGTGCCTGAC  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTTGAACATTGGGTTATACAAAGTTCATAGGATGGTGCCTGAC  397

seq1  CCATAGCAGGCACTTTATAAACAGTGCCATGAGGATTTTACCCCAGTCAT  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCAGGCACTTTATAAACAGTGCCATGAGGATTTTACCCCAGTCAT  447

seq1  TCTCAACCTATTAATTCCCAGGCATTTTTCTGGTATATAAGGTCATTTTT  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCTATTAATTCCCAGGCATTTTTCTGGTATATAAGGTCATTTTT  497

seq1  TTTACCTATGATCTTTTGCTTTATGAGTCATAGAGTTGCCTGTTACATAA  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTATGATCTTTTGCTTTATGAGTCATAGAGTTGCCTGTTACATAA  547

seq1  TTTAGAAATGCTTTGATATTTCTTGTTTGTCACTATCTATTATCCACAGC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATGCTTTGATATTTCTTGTTTGTCACTATCTATTATCCACAGC  597

seq1  CATCATAAAATATGACTTGGAAATCCCCTTTGATGAGACAGAGCTTTTGA  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAAATATGACTTGGAAATCCCCTTTGATGAGACAGAGCTTTTGA  647

seq1  GAATACTCCTTGTGTACATATAACACTTCACTCTAAGTCACATTTCCTAC  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTCCTTGTGTACATATAACACTTCACTCTAAGTCACATTTCCTAC  697

seq1  TTAGAGTCCCCTGCAGAATGGCATCATCATTTTACTGTACTTTTTCATTC  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTCCCCTGCAGAATGGCATCATCATTTTACTGTACTTTTTCATTC  747

seq1  CCTTTATTATTAGCCAAAGTGCTTTGCATTCTCTTTTTCCTGTATCTCTC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTATTAGCCAAAGTGCTTTGCATTCTCTTTTTCCTGTATCTCTC  797

seq1  TGTTACTGTAAATACTATTGATATACAATTTGTTCGCCTGCCATTCCCTT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGTAAATACTATTGATATACAATTTGTTCGCCTGCCATTCCCTT  847

seq1  GCCTGGCATTCCTGTAATGGTATTAACCTTCTGGGATCTGGCTTTGTCCA  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCATTCCTGTAATGGTATTAACCTTCTGGGATCTGGCTTTGTCCA  897

seq1  ATAGCTTATGCCCTTTGCTCCCCATGTCTACTGTTAAATTTCTTAACTGC  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTATGCCCTTTGCTCCCCATGTCTACTGTTAAATTTCTTAACTGC  947

seq1  ATGTCACATGCCATGTACTTCTATTTGTCACTCCACTCAGGGAACACTAT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACATGCCATGTACTTCTATTTGTCACTCCACTCAGGGAACACTAT  997

seq1  CCCTCAAAGCCAGAAATATGCTTTGTTTTTCTGTTCTCTCTGTCTCTGTC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAGCCAGAAATATGCTTTGTTTTTCTGTTCTCTCTGTCTCTGTC  1047

seq1  TCTCTCTGTCTTTGTCTCTCTTGGTCTGTCTCTCTGTCTCTGTCTCTCTG  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTTTGTCTCTCTTGGTCTGTCTCTCTGTCTCTGTCTCTCTG  1097

seq1  TCTCTATTGTGTACTCATGCATGCATGTAGAAGTCAGATTTCAACACTGA  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTGTGTACTCATGCATGCATGTAGAAGTCAGATTTCAACACTGA  1147

seq1  ATTC  1130
      ||||
seq2  ATTC  1151