BAC Information

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BAC

Clone NameB6Ng01-254M22
Chromosome4 (Build37)
Map Location 15,844,048 - 15,845,196
singlet/doubletsinglet
Overlap geneDecr1
Upstream geneOTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095, LOC633695, Calb1
Downstream geneNbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254M22.bB6Ng01-254M22.g
ACCGA061178GA061179
length1,2091,136
definitionB6Ng01-254M22.b B6Ng01-254M22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctatatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaaggtttttatcat
acagatctttcacttccttcgttagagtcacgccgagatattttatatta
ttgtggctattgagaagggtgttgtttccctatttctttctcagcctgtt
tattcttggtgtagagaaaggccattgactggtttggagtattttatatc
agctacttcacggaagctgttttatcagggttagggagttctctggttgg
gattttttagggtcacttaatatattactaatcaaatcatctgggcaaag
tgaatttggactcctccttttccattgtataattccatggaagtctccct
ttttgttga
gaattcactcttgtatttgcgcataaggcttatttactagttaggcgcag
tagaagccagcccatcttataatggcaattgctcacggcacggctctcca
cagttgaagaaaataggggatgaagaaatggctgggagcatgtgctgctc
ttgtggaagactccagttcacccacatgggaggcaggtagctctcaatga
catgtaactcagctccggacccgatgcctagcctgcgtcctccgtgcacc
caaacacacgtgtgcagacacacatatatacataaaataatgaagaaaaa
acaaggaaggaaagagatgatgcaacctctacaagattatacaactgccg
aaaagtttttaatgtcgaagatgtattgacacgtttaaagcagcagatgg
ggatgaggggaaggaagcaaagccgtggggtagttgttggcactaaggat
gtgcgggaaaagcatcttagaacagtccagtggacaagagtgactctcaa
aggccttgttccaaacccaaacgatggcactgtggttgtgtttactgaac
aacaaacatcatttatgacacaattaactgtcaatgtacagttaccatac
aggtcttacacataacaaacagaaactctacattcttgcatagatctatt
catgaggtaataaaaactgcttcctgttatagcacagaggacaatggtgg
cggtcagtgtagtgaacatgctgtaagaggttgctctgaaagccaaatgg
actttctaaaagcacaggctcaattctaactctggaggcttaagactgtg
gctttcttatttggttctcaaaagtgcaagattatagtccaaataaaaaa
tatatattagtaagatacaaaaatattttatagccttcatgagtctctac
ttacagaaatccttgactgctatctcatattactatatttgttaactttg
aaagcatgtaattacccctttccaacatctaatcccatgtaatactaatc
ccatgtcttcaatacaattatttagacttctgaattccatttagcctagt
atcagagcagttactatcagttaatcctgtatccatagcatctgctatga
tatacaatctctacaccttaagctgaattaatacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_15844048_15845196
seq2: B6Ng01-254M22.g_70_1205

seq1  GAATTCACTCTTGTATTTGCGCATAAGGCTTATTTACTAGTTAGGCGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTGTATTTGCGCATAAGGCTTATTTACTAGTTAGGCGCAG  50

seq1  TAGAAGCCAGCCCATCTTATAATGGCAATTGCTCACGGCACGGCTCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCAGCCCATCTTATAATGGCAATTGCTCACGGCACGGCTCTCCA  100

seq1  CAGTTGAAGAAAATAGGGGATGAAGAAATGGCTGGGAGCATGTGCTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGAAAATAGGGGATGAAGAAATGGCTGGGAGCATGTGCTGCTC  150

seq1  TTGTGGAAGACTCCAGTTCACCCACATGGGAGGCAGGTAGCTCTCAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAAGACTCCAGTTCACCCACATGGGAGGCAGGTAGCTCTCAATGA  200

seq1  CATGTAACTCAGCTCCGGACCCGATGCCTAGCCTGCGTCCTCCGTGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACTCAGCTCCGGACCCGATGCCTAGCCTGCGTCCTCCGTGCACC  250

seq1  CAAACACACGTGTGCAGACACACATATATACATAAAATAATGAAGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACGTGTGCAGACACACATATATACATAAAATAATGAAGAAAAA  300

seq1  ACAAGGAAGGAAAGAGATGATGCAACCTCTACAAGATTATACAACTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAGGAAAGAGATGATGCAACCTCTACAAGATTATACAACTGCCG  350

seq1  AAAAGTTTTTAATGTCGAAGATGTATTGACACGTTTAAAGCAGCAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTTAATGTCGAAGATGTATTGACACGTTTAAAGCAGCAGATGG  400

seq1  GGATGAGGGGAAGGAAGCAAAGCCGTGGGGTAGTTGTTGGCACTAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGGGGAAGGAAGCAAAGCCGTGGGGTAGTTGTTGGCACTAAGGAT  450

seq1  GTGCGGGAAAAGCATCTTAGAACAGTCCAGTGGACAAGAGTGACTCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGGAAAAGCATCTTAGAACAGTCCAGTGGACAAGAGTGACTCTCAA  500

seq1  AGGCCTTGTTCCAAACCCAAACGATGGCACTGTGGTTGTGTTTACTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGTTCCAAACCCAAACGATGGCACTGTGGTTGTGTTTACTGAAC  550

seq1  AACAAACATCATTTATGACACAATTAACTGTCAATGTACAGTTACCATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACATCATTTATGACACAATTAACTGTCAATGTACAGTTACCATAC  600

seq1  AGGTCTTACACATAACAAACAGAAACTCTACATTCTTGCATAGATCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTACACATAACAAACAGAAACTCTACATTCTTGCATAGATCTATT  650

seq1  CATGAGGTAATAAAAACTGCTTCCTGTTATAGCACAGAGGACAATGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTAATAAAAACTGCTTCCTGTTATAGCACAGAGGACAATGGTGG  700

seq1  CGGTCAGTGTAGTGAACATGCTGTAAGAGGTTGCTCTGAAAGCCAAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAGTGTAGTGAACATGCTGTAAGAGGTTGCTCTGAAAGCCAAATGG  750

seq1  ACTTTCTAAAAGCACAGGCTCAATTCTAACTCTGGAGGCTTAAGACTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAAAAGCACAGGCTCAATTCTAACTCTGGAGGCTTAAGACTGTG  800

seq1  GCTTTCTTATTTGGTTCTCAAAAGTGCAAGATTATAGTCCAAATAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTATTTGGTTCTCAAAAGTGCAAGATTATAGTCCAAATAAAAAA  850

seq1  TATATATTAGTAAGATACAAAAATATTTTATAGCCTTCATGAGTCTCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTAGTAAGATACAAAAATATTTTATAGCCTTCATGAGTCTCTAC  900

seq1  TTACAGAAATCCTTGACTGCTATCTCATATTACTATATTTGTTAACTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAATCCTTGACTGCTATCTCATATTACTATATTTGTTAACTTTG  950

seq1  AAAGCAATGTAAATTACCCCTTTCCCAACATCTAAATCCCATGTAATACT  1000
      ||||| |||| |||||||||||| ||||||||| ||||||||||||||||
seq2  AAAGC-ATGT-AATTACCCCTTT-CCAACATCT-AATCCCATGTAATACT  996

seq1  TATCCCAATGTCTTCAATACAATTATTTTAGAACTCTGAAATTTCCA-TT  1049
       ||||| |||||||||||||||||| ||||||  ||||||  ||||| ||
seq2  AATCCC-ATGTCTTCAATACAATTA-TTTAGACTTCTGAA--TTCCATTT  1042

seq1  AG-CTAGTATCAAGAGCCAAGTACTATCAGTT-ATTCTGTATTCAATAAA  1097
      || |||||||| |||| ||  ||||||||||| || |||||| |   | |
seq2  AGCCTAGTATC-AGAG-CAGTTACTATCAGTTAATCCTGTATCC---ATA  1087

seq1  GCATCTGCTATGATATACAATCTCCTAACACACTAAGGCTGAATTAATAC  1147
      ||||||||||||||||||||||||   |||| || | |||||||||||||
seq2  GCATCTGCTATGATATACAATCTC--TACAC-CTTAAGCTGAATTAATAC  1134

seq1  AG  1149
      ||
seq2  AG  1136