BAC Information

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BAC

Clone NameB6Ng01-254P17
Chromosome4 (Build37)
Map Location 131,772,171 - 131,882,822
singlet/doubletdoublet
Overlap geneLOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2
Downstream geneRcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254P17.bB6Ng01-254P17.g
ACCGA061304GA061305
length1,123894
definitionB6Ng01-254P17.b B6Ng01-254P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,881,710 - 131,882,822)(131,772,171 - 131,773,068)
sequence
gaattccagacttataacgtacaaagccaaccttttgcttttcccgtgac
acccccctgccccttaaaactgaacaaagaatcagtggccttttgtatac
taggcaggtgccctaatatggactgttaatttttgttttgtttggctttt
caagacaggggttctttgtgtagccctggccgtcctgaaattggtctgtg
accaggctggcctggaatttacagaaatccacctgcctctgactcttgag
tgctgggatcaaaggttgcgccaccactgcccagcttaatgtagcctttg
agtaaaagtcagcaccttcttgattaatttattctggcattttctctggg
acgactcttgatttctagtaagctagacaaagggtctgaagggtcgggtg
ggtcacattaagggtttttggcagtatttcatcacaggtaatgtgacata
tacataattggttattaaatcagtcagggactggccagattgactgttct
tgtacttaaagttatttctgatttggaatatagagtgaaataaaaatagt
ttggttctatcagaaaaaaaaaaaaaaacccacagttttgaaaaccattt
ttttcaagctgggttgtggggcacacgcctttggttccagcacttagaag
gcaggggcaggtggatccctgtgagtttaaagccagcctggtctacagag
tgagttataggacaactagagctatatagtaagatcctgttttaacagaa
aaaggagagagagagagagagaaaaacaagaaagaaagaatccatttttt
tcctctcctcaggccgagatgtacctgggcatccttatcgctctttctct
gcttgcttccagaatcccagctggctactgctttgtgggattcgcagatt
ttggccacagccgaggagtgtttgcataaaattaatgggaaaccccttcc
cgggagccactcctgtaaggacactttggacgatgctggccttgccgttt
tgggttgtcctttaaatactaacaacgtagtgaatttgccctggaacacc
acagcttttcatttaatcctgtagcctgcagcattaggtactgttagctt
tgaatgacaggacccaaggagct
gaattcctcagtagcccagctagaccttgaatttttgatcctcctgcctc
aggttcccaaagaactaggattataggctgcttctatctgattttgtttc
ctactgattttgttttccttcagtgctgagttccaggccagcctggtcta
cagagcaagttccaggacagccagggttatacagagaaagcttatctgag
aaaagaaacaaacaaacaaacccagaaggcaggtgtggtagtctatgcct
ttaatcttagcatttaaggaggcagtggcagggagatttctctgagttct
aagacagccagagcaacacagagggacccagtctcaaacaaacatttaat
gaaagaaagtcttggattcagttagaaatctagaagaaggaagttaaaga
aagcaatgagtcttcatatcagcctgtggtggcacatggacataatctga
gctcttgggaggtagagtcaagatttagggagaggcaaggtcaacctcag
ctatattacaagttgcatggagccagagctacaaggaaccttgtctcaag
ttttattttactatttcacttattttattttgaggaagtatctcactatg
tagccctggctggtaaaactccctgtgtagataaggctggtttggaactc
acttatccacgagtctctgtttcttgagtgctggaaataaaggtatgtac
cattgtactcagaaaaaaaaatcttttcagataaggtattgctatgctac
tcatgttggcctaagtccatccagctctgccgtcagctgggattaaaggc
atatgccaccatgcctagctcatagtccagttttttttttttttgttttt
gtttttttgtttttttttttttgggtttttgaaacagggtttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131881710_131882822
seq2: B6Ng01-254P17.b_47_1169 (reverse)

seq1  AGCTCC-TGGGTCCTGTCGATCAAAGCTAACAGTACCT-ATGCTGCAGGG  48
      |||||| |||||||||||  |||||||||||||||||| |||||||| ||
seq2  AGCTCCTTGGGTCCTGTCATTCAAAGCTAACAGTACCTAATGCTGCA-GG  49

seq1  CTACAGGATTAAATGAAAAGCTGT-GTG-TCCAGGGC-AATTCACTACG-  94
      |||||||||||||||||||||||| ||| |||||||| ||||||||||| 
seq2  CTACAGGATTAAATGAAAAGCTGTGGTGTTCCAGGGCAAATTCACTACGT  99

seq1  TGGTAGTAATTAAA-GACAA-CCAAAACGGCAAGGCCAGCATCGTCC-AA  141
      || ||||| ||||| ||||| |||||||||||||||||||||||||| ||
seq2  TGTTAGTATTTAAAGGACAACCCAAAACGGCAAGGCCAGCATCGTCCAAA  149

seq1  GTGTCCTTACAGGAGTGGCTCCC-GGAAGGGGTTTCCCATTAATTTTATG  190
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTCCTTACAGGAGTGGCTCCCGGGAAGGGGTTTCCCATTAATTTTATG  199

seq1  CAAACACTTCTCGGCTGTGGCC-AAATCTGCGAATTCCACAAAGCAGTAG  239
      |||||||| ||||||||||||| |||||||||||| ||||||||||||||
seq2  CAAACACTCCTCGGCTGTGGCCAAAATCTGCGAATCCCACAAAGCAGTAG  249

seq1  CCAGCTGGGATTCTGGAAGCAAGCAGAGAAAGAGCGATAAGGATGCCCAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGGATTCTGGAAGCAAGCAGAGAAAGAGCGATAAGGATGCCCAG  299

seq1  GTACATCTCGGCCTGAGGAGAGGAAAAAAATGGATTCTTTCTTTCTTTGT  339
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTACATCTCGGCCTGAGGAGAGGAAAAAAATGGATTCTTTCTTTC-TTGT  348

seq1  TTTTCTCTCTCTCTCTCTCTCC-TTTTCTGTTAAAACAGGATCTTACTAT  388
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTCTCTCTCTCTCTCTCTCCTTTTTCTGTTAAAACAGGATCTTACTAT  398

seq1  ATAGCTCTAGTTGTCCTATAACTCACTCTGTAGACCAGGCTGGCTTTAAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTAGTTGTCCTATAACTCACTCTGTAGACCAGGCTGGCTTTAAA  448

seq1  CTCACAGGGATCCACCTGCCCCTGCCTTCTAAGTGCTGGAACCAAAGGCG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGGATCCACCTGCCCCTGCCTTCTAAGTGCTGGAACCAAAGGCG  498

seq1  TGTGCCCCACAACCCAGCTTGAAAAAAATGGTTTTCAAAACTGTGGGTTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCACAACCCAGCTTGAAAAAAATGGTTTTCAAAACTGTGGGTTT  548

seq1  TTTTTTTTTTTTCTGATAGAACCAAACTATTTTTATTTCACTCTATATTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCTGATAGAACCAAACTATTTTTATTTCACTCTATATTC  598

seq1  CAAATCAGAAATAACTTTAAGTACAAGAACAGTCAATCTGGCCAGTCCCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGAAATAACTTTAAGTACAAGAACAGTCAATCTGGCCAGTCCCT  648

seq1  GACTGATTTAATAACCAATTATGTATATGTCACATTACCTGTGATGAAAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTTAATAACCAATTATGTATATGTCACATTACCTGTGATGAAAT  698

seq1  ACTGCCAAAAACCCTTAATGTGACCCACCCGACCCTTCAGACCCTTTGTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAAAAACCCTTAATGTGACCCACCCGACCCTTCAGACCCTTTGTC  748

seq1  TAGCTTACTAGAAATCAAGAGTCGTCCCAGAGAAAATGCCAGAATAAATT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTACTAGAAATCAAGAGTCGTCCCAGAGAAAATGCCAGAATAAATT  798

seq1  AATCAAGAAGGTGCTGACTTTTACTCAAAGGCTACATTAAGCTGGGCAGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAAGGTGCTGACTTTTACTCAAAGGCTACATTAAGCTGGGCAGT  848

seq1  GGTGGCGCAACCTTTGATCCCAGCACTCAAGAGTCAGAGGCAGGTGGATT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGCAACCTTTGATCCCAGCACTCAAGAGTCAGAGGCAGGTGGATT  898

seq1  TCTGTAAATTCCAGGCCAGCCTGGTCACAGACCAATTTCAGGACGGCCAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAATTCCAGGCCAGCCTGGTCACAGACCAATTTCAGGACGGCCAG  948

seq1  GGCTACACAAAGAACCCCTGTCTTGAAAAGCCAAACAAAACAAAAATTAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAAAGAACCCCTGTCTTGAAAAGCCAAACAAAACAAAAATTAA  998

seq1  CAGTCCATATTAGGGCACCTGCCTAGTATACAAAAGGCCACTGATTCTTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATATTAGGGCACCTGCCTAGTATACAAAAGGCCACTGATTCTTT  1048

seq1  GTTCAGTTTTAAGGGGCAGGGGGGTGTCACGGGAAAAGCAAAAGGTTGGC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTTTAAGGGGCAGGGGGGTGTCACGGGAAAAGCAAAAGGTTGGC  1098

seq1  TTTGTACGTTATAAGTCTGGAATTC  1113
      |||||||||||||||||||||||||
seq2  TTTGTACGTTATAAGTCTGGAATTC  1123

seq1: chr4_131772171_131773068
seq2: B6Ng01-254P17.g_70_963

seq1  GAATTCCTCAGTAGCCCAGCTAGACCTTGAATTTTTGATCCTCCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGTAGCCCAGCTAGACCTTGAATTTTTGATCCTCCTGCCTC  50

seq1  AGGTTCCCAAAGAACTAGGATTATAGGCTGCTTCTATCTGATTTTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCAAAGAACTAGGATTATAGGCTGCTTCTATCTGATTTTGTTTC  100

seq1  CTACTGATTTTGTTTTCCTTCAGTGCTGAGTTCCAGGCCAGCCTGGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATTTTGTTTTCCTTCAGTGCTGAGTTCCAGGCCAGCCTGGTCTA  150

seq1  CAGAGCAAGTTCCAGGACAGCCAGGGTTATACAGAGAAAGCTTATCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAGTTCCAGGACAGCCAGGGTTATACAGAGAAAGCTTATCTGAG  200

seq1  AAAAGAAACAAACAAACAAACCCAGAAGGCAGGTGTGGTAGTCTATGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACAAACAAACAAACCCAGAAGGCAGGTGTGGTAGTCTATGCCT  250

seq1  TTAATCTTAGCATTTAAGGAGGCAGTGGCAGGGAGATTTCTCTGAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTAGCATTTAAGGAGGCAGTGGCAGGGAGATTTCTCTGAGTTCT  300

seq1  AAGACAGCCAGAGCAACACAGAGGGACCCAGTCTCAAACAAACATTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCCAGAGCAACACAGAGGGACCCAGTCTCAAACAAACATTTAAT  350

seq1  GAAAGAAAGTCTTGGATTCAGTTAGAAATCTAGAAGAAGGAAGTTAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGTCTTGGATTCAGTTAGAAATCTAGAAGAAGGAAGTTAAAGA  400

seq1  AAGCAATGAGTCTTCATATCAGCCTGTGGTGGCACATGGACATAATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGAGTCTTCATATCAGCCTGTGGTGGCACATGGACATAATCTGA  450

seq1  GCTCTTGGGAGGTAGAGTCAAGATTTAGGGAGAGGCAAGGTCAACCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGGAGGTAGAGTCAAGATTTAGGGAGAGGCAAGGTCAACCTCAG  500

seq1  CTATATTACAAGTTGCATGGAGCCAGAGCTACAAGGAACCTTGTCTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTACAAGTTGCATGGAGCCAGAGCTACAAGGAACCTTGTCTCAAG  550

seq1  TTTTATTTTACTATTTCACTTATTTTATTTTGAGGAAGTATCTCACTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTACTATTTCACTTATTTTATTTTGAGGAAGTATCTCACTATG  600

seq1  TAGCCCTGGCTGGTAAAACTCCCTGTGTAGATAAGGCTGGTTTGGAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGGTAAAACTCCCTGTGTAGATAAGGCTGGTTTGGAACTC  650

seq1  ACTTATCCACGAGTCTCTGTTTCTTGAGTGCTGGAAATAAAGGTATGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCCACGAGTCTCTGTTTCTTGAGTGCTGGAAATAAAGGTATGTAC  700

seq1  CATTGTACTCAG-AAAAAAAATCTTTTCAGATAAGGTATTGCTATGCTAC  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATTGTACTCAGAAAAAAAAATCTTTTCAGATAAGGTATTGCTATGCTAC  750

seq1  TCAGGTTGGCCTAAGTCCATCCAGCTCTGCCGTCAGCTGGGATTAAAGGC  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTGGCCTAAGTCCATCCAGCTCTGCCGTCAGCTGGGATTAAAGGC  800

seq1  ATATGCCACCATGCCTAGCTCATAGTCCAGTTTTTTTTTTTTTTTGTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  ATATGCCACCATGCCTAGCTCATAGTCCAGTTTTTTTTTTTTTT--GTTT  848

seq1  TTGTTTTTTTTGTTTTTTTTTTTTTTTTGGGTTTTGAGACAGGGTTTCT  898
      |||||||||   | ||||||||||||| || |||||| |||||||||||
seq2  TTGTTTTTT---TGTTTTTTTTTTTTTGGGTTTTTGAAACAGGGTTTCT  894