BAC Information

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BAC

Clone NameB6Ng01-255H08
Chromosome4 (Build37)
Map Location 28,132,518 - 28,246,401
singlet/doubletdoublet
Overlap geneLOC100040735
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842
Downstream geneLOC230044, LOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255H08.bB6Ng01-255H08.g
ACCGA061660GA061661
length7971,140
definitionB6Ng01-255H08.b B6Ng01-255H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,245,607 - 28,246,401)(28,132,518 - 28,133,664)
sequence
gaattcagttcagtgcagtaattgcagtgcagtagaactgaatttgttca
tcagttcatgcagtccagtgtaggtcagcagagtcagttgaagtcagaga
ataaaaaaagatccaaaagcttagaacaaactgctagagttaattttagg
acaagcagagcaaaaagtcagaagccaacagaaggcagtttgaatcagtc
agcttagagagaagtttgtgctagaacagctaaattaaactagccaccaa
gggttcagaaagatctggaaagggagaacttattcaacggtaagccttca
agacaataatagcatcaggcaaataaaagttcaattacattcaggtccat
atgtgagtgtgactccaccatttttatttccttttcttgaatattttaac
ttaacataacagtctcttgattcatatatcacaaatagttcgagttaact
tgttttaatttttaacaagattatatgtgtctccgtatgtatatgtgttt
gtatgtatatgtatgtgtgagtgtgtatgcctgtatgggtatgcatgtgt
gtgtgtgcatcctatgcataccacagtgtgtgcataagatcagaagataa
cttgcagaaatctgttctccccaaccaccatttggaagtccaggatcaaa
tttattttgttaggcttgatgacaagtgcctttaagtaatgagccatttt
tgttgtccagactttattcattttttaatggctgaatagcattccaacct
gtatatgaactccatttttttctaatgtttcatctattgatggattc

gaattctcaaaagaagagtaatggttttaatatttatttatatgctattc
tgagcataatctgtagttcttattactttctgttttttaccatcagatat
tttgtaggaaacactaaaaattctaatggattaatgcttggttttatcaa
atttttcctttttaaggacattggtaatctgatgtgaggataaaagtatt
tatgtttcactaactcataatgtattttgagttttaaagttgttaaatta
gcaaaggttcatgaaagcatttttcactctttggatcaaaataaacacct
aaagaaagcattcacaacttatagaaagaattcagataatcaatagtaag
atagtttggggacatattttttgtatacatcataattattattaaactga
aaatttcagagaacatattttacatcaggcagatgtaccctagctgtctt
aagtacaattgtaatatcagttcttttttcagtttttaatttagtaagaa
ttggtttttgtaatggacccaaaagacttgcttgattatattaaaatggc
atgtgaatgttccacacagactggcaaaccccacaaagctccaaactagg
taacattttaaaggtgcaacaatctcaaacgagcacttgagtactgaaat
tttcatctaatgcctaatgagtaaccaaggatctttacagaaaaactgtt
agtgaaataaatacctaaaaataatttaaaataataataataataacaac
aataataataataaagaagtcacatgtgaggctggcaacctcctgtcagt
atgtgaggtcccaaattctctgataaaaatggacaaaaagacaagagaaa
gcataagaactgtgaatctcctctaaaagaacgtttcaaactgtgaggtt
tcatttttatgtttaagaatccacaatgattgggccaagacacagagaac
agaaacagagttgatatatgggctactttggagcagccatgagagcacac
tagaggagatagaaagagccttggtggctactgcttgggtttttcttctc
tgtctgtgatagatacacactccactttatatatccctactcatatttac
agttatatatattggatgactttaatattttttgcaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28245607_28246401
seq2: B6Ng01-255H08.b_46_842 (reverse)

seq1  GAATCCATCAATAGATGAAACAATAGAAAAAAATGGAGTTCATATACAGG  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAATCCATCAATAGATGAAACATTAGAAAAAAATGGAGTTCATATACAGG  50

seq1  TTGGAATGCTATTCAGCCATT-AAAAATGAATAAAGTCTGGACAAC-AAA  98
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TTGGAATGCTATTCAGCCATTAAAAAATGAATAAAGTCTGGACAACAAAA  100

seq1  ATGGCTCATTACTTAAAGGCACTTGTCATCAAGCCTAACAAAATAAATTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCATTACTTAAAGGCACTTGTCATCAAGCCTAACAAAATAAATTT  150

seq1  GATCCTGGACTTCCAAATGGTGGTTGGGGAGAACAGATTTCTGCAAGTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGACTTCCAAATGGTGGTTGGGGAGAACAGATTTCTGCAAGTTA  200

seq1  TCTTCTGATCTTATGCACACACTGTGGTATGCATAGGATGCACACACACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGATCTTATGCACACACTGTGGTATGCATAGGATGCACACACACA  250

seq1  CATGCATACCCATACAGGCATACACACTCACACATACATATACATACAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATACCCATACAGGCATACACACTCACACATACATATACATACAAA  300

seq1  CACATATACATACGGAGACACATATAATCTTGTTAAAAATTAAAACAAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACATACGGAGACACATATAATCTTGTTAAAAATTAAAACAAGT  350

seq1  TAACTCGAACTATTTGTGATATATGAATCAAGAGACTGTTATGTTAAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCGAACTATTTGTGATATATGAATCAAGAGACTGTTATGTTAAGTT  400

seq1  AAAATATTCAAGAAAAGGAAATAAAAATGGTGGAGTCACACTCACATATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCAAGAAAAGGAAATAAAAATGGTGGAGTCACACTCACATATG  450

seq1  GACCTGAATGTAATTGAACTTTTATTTGCCTGATGCTATTATTGTCTTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAATGTAATTGAACTTTTATTTGCCTGATGCTATTATTGTCTTGA  500

seq1  AGGCTTACCGTTGAATAAGTTCTCCCTTTCCAGATCTTTCTGAACCCTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTACCGTTGAATAAGTTCTCCCTTTCCAGATCTTTCTGAACCCTTG  550

seq1  GTGGCTAGTTTAATTTAGCTGTTCTAGCACAAACTTCTCTCTAAGCTGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGTTTAATTTAGCTGTTCTAGCACAAACTTCTCTCTAAGCTGAC  600

seq1  TGATTCAAACTGCCTTCTGTTGGCTTCTGACTTTTTGCTCTGCTTGTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAACTGCCTTCTGTTGGCTTCTGACTTTTTGCTCTGCTTGTCCT  650

seq1  AAAATTAACTCTAGCAGTTTGTTCTAAGCTTTTGGATCTTTTTTTATTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAACTCTAGCAGTTTGTTCTAAGCTTTTGGATCTTTTTTTATTCT  700

seq1  CTGACTTCAACTGACTCTGCTGACCTACACTGGACTGCATGAACTGATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCAACTGACTCTGCTGACCTACACTGGACTGCATGAACTGATGA  750

seq1  ACAAATTCAGTTCTACTGCACTGCAATTACTGCACTGAACTGAATTC  795
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAGTTCTACTGCACTGCAATTACTGCACTGAACTGAATTC  797


seq1: chr4_28132518_28133664
seq2: B6Ng01-255H08.g_67_1206

seq1  GAATTCTCAAAAGAAGAGTAATGGTTTTAATATTTATTTATATGCTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAGAAGAGTAATGGTTTTAATATTTATTTATATGCTATTC  50

seq1  TGAGCATAATCTGTAGTTCTTATTACTTTCTGTTTTTTACCATCAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATAATCTGTAGTTCTTATTACTTTCTGTTTTTTACCATCAGATAT  100

seq1  TTTGTAGGAAACACTAAAAATTCTAATGGATTAATGCTTGGTTTTATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGAAACACTAAAAATTCTAATGGATTAATGCTTGGTTTTATCAA  150

seq1  ATTTTTCCTTTTTAAGGACATTGGTAATCTGATGTGAGGATAAAAGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTTTTTAAGGACATTGGTAATCTGATGTGAGGATAAAAGTATT  200

seq1  TATGTTTCACTAACTCATAATGTATTTTGAGTTTTAAAGTTGTTAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCACTAACTCATAATGTATTTTGAGTTTTAAAGTTGTTAAATTA  250

seq1  GCAAAGGTTCATGAAAGCATTTTTCACTCTTTGGATCAAAATAAACACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTTCATGAAAGCATTTTTCACTCTTTGGATCAAAATAAACACCT  300

seq1  AAAGAAAGCATTCACAACTTATAGAAAGAATTCAGATAATCAATAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGCATTCACAACTTATAGAAAGAATTCAGATAATCAATAGTAAG  350

seq1  ATAGTTTGGGGACATATTTTTTGTATACATCATAATTATTATTAAACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGGGGACATATTTTTTGTATACATCATAATTATTATTAAACTGA  400

seq1  AAATTTCAGAGAACATATTTTACATCAGGCAGATGTACCCTAGCTGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAGAGAACATATTTTACATCAGGCAGATGTACCCTAGCTGTCTT  450

seq1  AAGTACAATTGTAATATCAGTTCTTTTTTCAGTTTTTAATTTAGTAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAATTGTAATATCAGTTCTTTTTTCAGTTTTTAATTTAGTAAGAA  500

seq1  TTGGTTTTTGTAATGGACCCAAAAGACTTGCTTGATTATATTAAAATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTGTAATGGACCCAAAAGACTTGCTTGATTATATTAAAATGGC  550

seq1  ATGTGAATGTTCCACACAGACTGGCAAACCCCACAAAGCTCCAAACTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATGTTCCACACAGACTGGCAAACCCCACAAAGCTCCAAACTAGG  600

seq1  TAACATTTTAAAGGTGCAACAATCTCAAACGAGCACTTGAGTACTGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTAAAGGTGCAACAATCTCAAACGAGCACTTGAGTACTGAAAT  650

seq1  TTTCATCTAATGCCTAATGAGTAACCAAGGATCTTTACAGAAAAACTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTAATGCCTAATGAGTAACCAAGGATCTTTACAGAAAAACTGTT  700

seq1  AGTGAAATAAATACCTAAAAATAATTTAAAATAATAATAATAATAACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATAAATACCTAAAAATAATTTAAAATAATAATAATAATAACAAC  750

seq1  AATAATAATAATAAAGAAGTCACATGTGAGGCTGGCAACCTCCTGTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAAAGAAGTCACATGTGAGGCTGGCAACCTCCTGTCAGT  800

seq1  ATGTGAGGTCCCAAATTCTCTGATAAAAATGGACAAAAAGACAAGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGTCCCAAATTCTCTGATAAAAATGGACAAAAAGACAAGAGAAA  850

seq1  GCATAAGAACTGTGAATCTCCTCTAAAAGAACGTTTCAAACTGTGAGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAACTGTGAATCTCCTCTAAAAGAACGTTTCAAACTGTGAGGTT  900

seq1  TCATTTTTATGTTTAAGAATCCACAATGATT-GGCCAAGACAACAGAGAA  949
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TCATTTTTATGTTTAAGAATCCACAATGATTGGGCCAAGAC-ACAGAGAA  949

seq1  CAGAAACAGAGTTGATATATGGGCTAACTTTGGAGCAGCCAATGAGAGCA  999
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  CAGAAACAGAGTTGATATATGGGCT-ACTTTGGAGCAGCC-ATGAGAGCA  997

seq1  CAACTAGAGGAGATAGAAAGAGGCCTTGGTGGCTACTGCTTGGGTTTTTC  1049
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  C-ACTAGAGGAGATAGAAAGA-GCCTTGGTGGCTACTGCTTGGGTTTTTC  1045

seq1  -TCTCTGTCTGTGATAAGATACACACT-CACTTTATAATAATCCCTACCT  1097
       |||||||||||||| ||||||||||| |||||||||   ||||||| ||
seq2  TTCTCTGTCTGTGAT-AGATACACACTCCACTTTATA--TATCCCTA-CT  1091

seq1  CATATTTTACA-TTATATATATTGTGAATGAACTTTATA-TTTTTGCAAT  1145
      |||| |||||| ||||||||||  || ||||  || ||| ||||||||||
seq2  CATA-TTTACAGTTATATATAT--TGGATGACTTTAATATTTTTTGCAAT  1138

seq1  AA  1147
      ||
seq2  AA  1140


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