BAC Information

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BAC

Clone NameB6Ng01-256A24
Chromosome4 (Build37)
Map Location 142,771,518 - 142,927,116
singlet/doubletdoublet
Overlap genePrdm2, EG626575, LOC433776, Pdpn
Upstream geneEG665983, LOC546484, 6330411D24Rik, LOC666018
Downstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256A24.bB6Ng01-256A24.g
ACCGA062116GA062117
length585214
definitionB6Ng01-256A24.b B6Ng01-256A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,926,532 - 142,927,116)(142,771,518 - 142,771,687)
sequence
ggaattcatttccactggcagatggaaataaatagaacggctattcccca
taagctgccagctcctcttgactctcggggagcagcaccctgttatgtcc
cggtggtgatttatggtcgttctactaagactgtcatattggggagctcg
tcttggatgcatattactcactgggctgaaccctggtcagaaccagcaat
gtgctgatgagaagtgtttcctggcttttcttttcatgcatgcatgcata
cataactgtttggcgatttaaatataatcataacttgcataatattcctt
attgcacattctgagtattctgaactatttctcataaaatgaatttattt
aattttttgctgaagtcatgacctacgacgagcctacagttgctgtttgg
ccttgactcagcaaaaccagaccacttgaataccatccaggtggcaaatt
ttaagcttttatttatttcaaattttattttattttatgtatatgggtgt
tttgcctgcatgtatgtctatgtgccactttcgagcctaatgtccacaca
ggccagaggaggaagtagaggtatagataatgctg
cgcggaatcatcagagcgggcggaaggactagtatttaggggaagtaagg
aataaggacttgaaaaggaacaggaattttttttatctagcttttagaat
catttccaaatcagactgaaaactacagactaattttttctctcaaaaag
aatcatttttaatttttgattggtttcaagacaagggtttctccgtatag
cccccagtatcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142926532_142927116
seq2: B6Ng01-256A24.b_54_637 (reverse)

seq1  CAGCATTATCTATACCTCTACTTCCTCCTCTGGCCTGTGTGGACATTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTATCTATACCTCTACTTCCTCCTCTGGCCTGTGTGGACATTAGG  50

seq1  CTCGAAAGTGGCACATAGACATACATGCAGGCAAAACACCCATATACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAGTGGCACATAGACATACATGCAGGCAAAACACCCATATACATA  100

seq1  AAATAAAATAAAATTTGAAATAAATAAAAGCTTAAAATTTGCCACCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAAATTTGAAATAAATAAAAGCTTAAAATTTGCCACCTGGA  150

seq1  TGGTATTCAAGTGGTCTGGTTTTGCTGAGTCAAGGCCAAACAGCAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCAAGTGGTCTGGTTTTGCTGAGTCAAGGCCAAACAGCAACTGT  200

seq1  AGGCTCGTCGTAGGTCATGACTTCAGCAAAAAATTAAATAAATTCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCGTCGTAGGTCATGACTTCAGCAAAAAATTAAATAAATTCATTTT  250

seq1  ATGAGAAATAGTTCAGAATACTCAGAATGTGCAATAAGGAATATTATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATAGTTCAGAATACTCAGAATGTGCAATAAGGAATATTATGCA  300

seq1  AGTTATGATTATATTTAAATCGCCAAACAGTTATGTATGCATGCATGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGATTATATTTAAATCGCCAAACAGTTATGTATGCATGCATGCAT  350

seq1  GAAAAGAAAAGCCAGGAAACACTTCTCATCAGCACATTGCTGGTTCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGCCAGGAAACACTTCTCATCAGCACATTGCTGGTTCTGAC  400

seq1  CAGGGTTCAGCCCAGTGAGTAATATGCATCCAAGACGAGCTCCCCAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCAGCCCAGTGAGTAATATGCATCCAAGACGAGCTCCCCAATAT  450

seq1  GACAGTCTTAGTAGAACGACCATAAATCACCACCGGGACATAACAGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTTAGTAGAACGACCATAAATCACCACCGGGACATAACAGGGTG  500

seq1  CTGCAGCCCCGAGAGTCAAGAGGAGCTGGCAGCTTATGGGGAAAGTAG--  548
      ||||  |||||||||||||||||||||||||||||||||||||  |||  
seq2  CTGC-TCCCCGAGAGTCAAGAGGAGCTGGCAGCTTATGGGGAA--TAGCC  547

seq1  GTTCTATTTATTTCCATCTGCCAGTGGAAATGAATTC  585
      |||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTTATTTCCATCTGCCAGTGGAAATGAATTC  584

seq1: chr4_142771518_142771687
seq2: B6Ng01-256A24.g_108_277

seq1  GTAAGGAATAAGGATACTGGTATCAACAAGGAAAACCAGG----------  40
      |||||||||||||  ||| |     | ||||||   ||||          
seq2  GTAAGGAATAAGG--ACTTG-----AAAAGGAA---CAGGAATTTTTTTT  40

seq1  ATGTAGCTTTTAGAATCATTTCCAAATCAGACTGAAAACTAAAGACTAA-  89
      || |||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  ATCTAGCTTTTAGAATCATTTCCAAATCAGACTGAAAACTACAGACTAAT  90

seq1  -TTTTCTTACAGCAATGAAGCATTTTTAATTTTTGATTGTTTTTCAAGAC  138
       ||||||  ||  || ||| |||||||||||||||||||  |||||||||
seq2  TTTTTCTCTCA-AAAAGAATCATTTTTAATTTTTGATTG-GTTTCAAGAC  138

seq1  AAGGGTTTCTCCGTATAGCCCAGAGTATCCTG  170
      |||||||||||||||||||||  |||||||||
seq2  AAGGGTTTCTCCGTATAGCCCCCAGTATCCTG  170