BAC Information

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BAC

Clone NameB6Ng01-256I18
Chromosome4 (Build37)
Map Location 16,739,660 - 16,873,320
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256I18.bB6Ng01-256I18.g
ACCGA062477GA062478
length1,0861,119
definitionB6Ng01-256I18.b B6Ng01-256I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,739,660 - 16,740,748)(16,872,214 - 16,873,320)
sequence
gaattctcatcattttcagccaaaacttcatttaaactaggtatatattt
atacaggcacacatagacacacacacacacacacacacacacagagagag
agagagagagagagagagagagagagagagagagagagagagagcacaat
acaaagtgtatcttaaatttagaaaacagtgttttgtgggctttcaaaca
ttcttaatgttattacatctccttttatattacacttccatcacctattt
tcctccttcttcctatatagcccctattctgttcttctctttccagctcc
atatttcctttgcttatcatggttcctttttatgttcctggcttctgtga
ttatctcaggttttatactcaagtctgaagagtcacagcttggatacaca
atcaagaaaacacatgcagcatttgtcttttagatctgctttaccttacc
tagtaaaatattttcctgttccatgctttaacttgcaagttttatacttt
catcttttctttagagctgactagaattcactcctaaaattcttgtatct
aattatgccaaaaatacacacgagtatacaattcataaaatatattattt
tagtacagtaattatgtgatctatcattctctagacatataactgaaggt
aatggaatcagaatgccaaaagaaaacatgtcaacactgttgtttttttt
ctgaagcatgattcacaataactaaatgtcattaaccttagtgtctttca
aagggtgaaaagtttttaaaacatgggcaatatttacattggagtactat
ttattattacaatgcatgtaagtactatttttaaatgcacaatctaataa
atcctggcatacaaagggaaatattccactgactcagtttgaatatgttt
ttagtttatgttcatggggtaatttgggtagcatgtatttctgtgttcca
catgtatgcagacctacaggttagaggagattattagatttcctagatat
gcaatacagatggatgctacctgcccttgtgagtgctggaaatgagctta
gtcctattaaaagtagcagttcttctaccagcgagc
gaattctcagtatgcttatagaactattctagattttctaggaagattgc
agagaaaaaaataaaaggaaaaaattgttaataatcactcacatgtggaa
catgaatgctggagcccccaaacaaaagtgctctcttatcctaagtgatg
attttgtggggagggaagcaggcaaagctaagccatagaaagtgggaaca
tcatgaactatattcatatccatataacttcaaagaaaatatcttgataa
aaacgtctgccttaaaactggaaaaaatgtagtaagattctaattcagga
agatttctcacacctaaacaagtcttaaaatctttgccctgctatttcat
taaagtgtgtgatttccgaaggcaaaaccttctatctcaatccctgtaat
gagactagaacttgaaaatcaaaccattacctcttcagtcccagcacaca
ccaacagctatgcagtgtggtgtggtatctggagtactcatttgccagtt
gtcagtcttctgagcaataggaaaggccacagcacttgcgacaaagaaaa
acagaggccaaccttctatgaactgggagcaaggtaatcactctattttg
catccgcagacaggcatgatgattttgagcaatgcccaagtagtggcatt
taaattgtacatatagtaacacccctgcaatataaaacagtaacctttat
gtactgaggttgctatagctgtcattacttccaatgtgacctgcttcatc
aaagagtttttcatctattattttattaaggcaaactaaaggtaagagtt
tccctgtattctccatttttaccaatgagttatgaaaaagtattctcttt
tcagaaaatttgcagtgtggtataaacacaataaaattgcctgactttct
cggttaagctaaggaatcacaaggcttccaagtgtctatctgcaactggg
aatataatcccctttgtgtttttcatttaatgacaaccatacccatctcc
gctcctgcactcacttctttaagctccagagattagcttgcctttgaaga
aaagggacattattcagcttttggtgagtgggggttattgggaagaccta
atggagaaacagcttgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_16739660_16740748
seq2: B6Ng01-256I18.b_44_1129

seq1  GAATTCTCATCATTTTCAGCCAAAACTTCATTTAAACTAGGTATATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCATTTTCAGCCAAAACTTCATTTAAACTAGGTATATATTT  50

seq1  ATACAGGCACACATAGACACACACACACACACACACACACACAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGCACACATAGACACACACACACACACACACACACACAGAGAGAG  100

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACAAT  150

seq1  ACAAAGTGTATCTTAAATTTAGAAAACAGTGTTTTGTGGGCTTTCAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGTATCTTAAATTTAGAAAACAGTGTTTTGTGGGCTTTCAAACA  200

seq1  TTCTTAATGTTATTACATCTCCTTTTATATTACACTTCCATCACCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGTTATTACATCTCCTTTTATATTACACTTCCATCACCTATTT  250

seq1  TCCTCCTTCTTCCTATATAGCCCCTATTCTGTTCTTCTCTTTCCAGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCTTCCTATATAGCCCCTATTCTGTTCTTCTCTTTCCAGCTCC  300

seq1  ATATTTCCTTTGCTTATCATGGTTCCTTTTTATGTTCCTGGCTTCTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTTTGCTTATCATGGTTCCTTTTTATGTTCCTGGCTTCTGTGA  350

seq1  TTATCTCAGGTTTTATACTCAAGTCTGAAGAGTCACAGCTTGGATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGGTTTTATACTCAAGTCTGAAGAGTCACAGCTTGGATACACA  400

seq1  ATCAAGAAAACACATGCAGCATTTGTCTTTTAGATCTGCTTTACCTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAAACACATGCAGCATTTGTCTTTTAGATCTGCTTTACCTTACC  450

seq1  TAGTAAAATATTTTCCTGTTCCATGCTTTAACTTGCAAGTTTTATACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAATATTTTCCTGTTCCATGCTTTAACTTGCAAGTTTTATACTTT  500

seq1  CATCTTTTCTTTAGAGCTGACTAGAATTCACTCCTAAAATTCTTGTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTCTTTAGAGCTGACTAGAATTCACTCCTAAAATTCTTGTATCT  550

seq1  AATTATGCCAAAAATACACACGAGTATACAATTCATAAAATATATTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCCAAAAATACACACGAGTATACAATTCATAAAATATATTATTT  600

seq1  TAGTACAGTAATTATGTGATCTATCATTCTCTAGACATATAACTGAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAGTAATTATGTGATCTATCATTCTCTAGACATATAACTGAAGGT  650

seq1  AATGGAATCAGAATGCCAAAAGAAAACATGTCAACACTGTTGTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATCAGAATGCCAAAAGAAAACATGTCAACACTGTTGTTTTTTTT  700

seq1  CTGAAGCATGATTCACAATAACTAAATGTCATTAACCTTAGTGTCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCATGATTCACAATAACTAAATGTCATTAACCTTAGTGTCTTTCA  750

seq1  AAGGGTGAAAAGTTTTTAAAACATGGGCAATATTTACATTGGAGTACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGAAAAGTTTTTAAAACATGGGCAATATTTACATTGGAGTACTAT  800

seq1  TTATTATTACAATGCATGTAAGTACTATTTTTAAATGCACAATCTAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTACAATGCATGTAAGTACTATTTTTAAATGCACAATCTAATAA  850

seq1  ATCCTGGCATACAAAGGGAAATATTCCACTGACTCAGTTTGAATATGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCATACAAAGGGAAATATTCCACTGACTCAGTTTGAATATGTTT  900

seq1  TTAGTTTATGTTCATGGGGTAATTT-GGTAGCATGTATTTCTGTGTTCCA  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTAGTTTATGTTCATGGGGTAATTTGGGTAGCATGTATTTCTGTGTTCCA  950

seq1  CATGTATGCAGACCCTACAGGTTAGAGGAGATTATTAGATTTCCTAGATA  999
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATGTATGCAGA-CCTACAGGTTAGAGGAGATTATTAGATTTCCTAGATA  999

seq1  TGCAATACAGATGGATGCTAACTG-CCTTGTGAGTGCTGGGAAATGAGGC  1048
      |||||||||||||||||||| ||| ||||||||||||| |||||||| ||
seq2  TGCAATACAGATGGATGCTACCTGCCCTTGTGAGTGCT-GGAAATGA-GC  1047

seq1  TTAGTCCTATTTAAAAGTAGCAGTTCTCTTACCCAGCGAGC  1089
      ||||||||| |||||||||||||||||  || |||||||||
seq2  TTAGTCCTA-TTAAAAGTAGCAGTTCTTCTA-CCAGCGAGC  1086

seq1: chr4_16872214_16873320
seq2: B6Ng01-256I18.g_66_1184 (reverse)

seq1  AGGC-AGCTG-TTCTCCATTA-GTCT--CCCATA---CCCACTCACC-AA  41
      |||| ||||| |||||||||| ||||  || |||   |||||||||| ||
seq2  AGGCAAGCTGTTTCTCCATTAGGTCTTCCCAATAACCCCCACTCACCAAA  50

seq1  AGCTGAATATTGTCC--TTTCTTCAAAGGCAGGCTAATCTCTGGAGCTTA  89
      ||||||||| |||||  |||||||||||||| ||||||||||||||||||
seq2  AGCTGAATAATGTCCCTTTTCTTCAAAGGCAAGCTAATCTCTGGAGCTTA  100

seq1  AAG-AGTGAGTGGCAGGAGCGGAGGATGGGTATGGTTGTCATTAAATGAA  138
      ||| ||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AAGAAGTGAGT-GCAGGAGCGGA-GATGGGTATGGTTGTCATTAAATGAA  148

seq1  AAACACAAAGGGGATTATATTCCCAGTTGCAGATAGACACTTGGAAGCCT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAAGGGGATTATATTCCCAGTTGCAGATAGACACTTGGAAGCCT  198

seq1  TGTGATT-CTTAGCTTAACCGAGAAAGTCAGGCAATTTTATTGTGTTTAT  237
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCCTTAGCTTAACCGAGAAAGTCAGGCAATTTTATTGTGTTTAT  248

seq1  ACCACACTGCAAATTTTCTG-AAAGAGAATACTTTTTCATAACTCATTGG  286
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCACACTGCAAATTTTCTGAAAAGAGAATACTTTTTCATAACTCATTGG  298

seq1  TAAAAATGGAGAATACAGGGAAACTCTTACCTTTAGTTTGCCTTAATAAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGAGAATACAGGGAAACTCTTACCTTTAGTTTGCCTTAATAAA  348

seq1  ATAATAGATGAAAAACTCTTTGATGAAGCAGGTCACATTGGAAGTAATGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGATGAAAAACTCTTTGATGAAGCAGGTCACATTGGAAGTAATGA  398

seq1  CAGCTATAGCAACCTCAGTACATAAAGGTTACTGTTTTATATTGCAGGGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATAGCAACCTCAGTACATAAAGGTTACTGTTTTATATTGCAGGGG  448

seq1  TGTTACTATATGTACAATTTAAATGCCACTACTTGGGCATTGCTCAAAAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTATATGTACAATTTAAATGCCACTACTTGGGCATTGCTCAAAAT  498

seq1  CATCATGCCTGTCTGCGGATGCAAAATAGAGTGATTACCTTGCTCCCAGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCCTGTCTGCGGATGCAAAATAGAGTGATTACCTTGCTCCCAGT  548

seq1  TCATAGAAGGTTGGCCTCTGTTTTTCTTTGTCGCAAGTGCTGTGGCCTTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAGGTTGGCCTCTGTTTTTCTTTGTCGCAAGTGCTGTGGCCTTT  598

seq1  CCTATTGCTCAGAAGACTGACAACTGGCAAATGAGTACTCCAGATACCAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGCTCAGAAGACTGACAACTGGCAAATGAGTACTCCAGATACCAC  648

seq1  ACCACACTGCATAGCTGTTGGTGTGTGCTGGGACTGAAGAGGTAATGGTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTGCATAGCTGTTGGTGTGTGCTGGGACTGAAGAGGTAATGGTT  698

seq1  TGATTTTCAAGTTCTAGTCTCATTACAGGGATTGAGATAGAAGGTTTTGC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCAAGTTCTAGTCTCATTACAGGGATTGAGATAGAAGGTTTTGC  748

seq1  CTTCGGAAATCACACACTTTAATGAAATAGCAGGGCAAAGATTTTAAGAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGAAATCACACACTTTAATGAAATAGCAGGGCAAAGATTTTAAGAC  798

seq1  TTGTTTAGGTGTGAGAAATCTTCCTGAATTAGAATCTTACTACATTTTTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGGTGTGAGAAATCTTCCTGAATTAGAATCTTACTACATTTTTT  848

seq1  CCAGTTTTAAGGCAGACGTTTTTATCAAGATATTTTCTTTGAAGTTATAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTAAGGCAGACGTTTTTATCAAGATATTTTCTTTGAAGTTATAT  898

seq1  GGATATGAATATAGTTCATGATGTTCCCACTTTCTATGGCTTAGCTTTGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGAATATAGTTCATGATGTTCCCACTTTCTATGGCTTAGCTTTGC  948

seq1  CTGCTTCCCTCCCCACAAAATCATCACTTAGGATAAGAGAGCACTTTTGT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCTCCCCACAAAATCATCACTTAGGATAAGAGAGCACTTTTGT  998

seq1  TTGGGGGCTCCAGCATTCATGTTCCACATGTGAGTGATTATTAACAATTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCTCCAGCATTCATGTTCCACATGTGAGTGATTATTAACAATTT  1048

seq1  TTTCCTTTTATTTTTTTCTCTGCAATCTTCCTAGAAAATCTAGAATAGTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTATTTTTTTCTCTGCAATCTTCCTAGAAAATCTAGAATAGTT  1098

seq1  CTATAAGCATACTGAGAATTC  1107
      |||||||||||||||||||||
seq2  CTATAAGCATACTGAGAATTC  1119