BAC Information

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BAC

Clone NameB6Ng01-256L03
Chromosome4 (Build37)
Map Location 64,341,351 - 64,490,306
singlet/doubletdoublet
Overlap genenone
Upstream geneTnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256L03.bB6Ng01-256L03.g
ACCGA062588GA062589
length1,1441,025
definitionB6Ng01-256L03.b B6Ng01-256L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,489,153 - 64,490,306)(64,341,351 - 64,342,288)
sequence
gaattccatttgaaatggaatcattttatggaatggacaatgtgcatctg
atgttctgtctgactcccacatgtcttcatgccattttgatggacatttt
gttgggtacagttgtgatagagatagtcacacatctggatctgccctatt
cagttcttggtgtcatctctgttaattgtgctttatgttaacccttcata
caacatcagtgaaaattattgttattaattcttccaaaaattggtttgta
gctataatgctccaaaatttgacttacaggagccaatcatgatctactag
tctttaaaaacctaccatctatctctgtctgtctatctatctatctatct
atctatctatctatctatctatctttctatctatccatctttctatctgt
gtgtgagtgtgtatgtgcatgcaccagatgcaatgataccaaggaggttg
gaagagggctttgggattcctggagctggattacaggaggtgggggctat
gatccttggctgctgaggactgaaccatatccctgtgcaaaactctgaac
cattcagccatctctccagccacatcctactcagtcttaaaagaacttca
ttacttagctagagatggtaaatttagagggcacacaggagctagctgca
gtatttcatgtcatggaacagaaaacagaagtgttagctgagacaaaaaa
gtaaaagacatggctctagatactatagttatgctgccttggcataagtt
gcctgtgaagtcaccaaaatctctaattctgcaaatattctattaatata
ttaggtaatggtagaaattatctatatagtacttaactggtagtgactaa
caatatttaaaatgcagctgcactagctatcttcctacagacatatatat
taccagaccatatataactaatgattgtaattcatcccattaagtttcac
agatatagctgcctaacaggagcttacaaggatggtggcagtaaacatgc
taatgtgaaagggaaaaggtcggcagaattcggccctagacaaggtctac
agcaataagataccagagagaggggagaaatagcttctcaagcatagcac
tacagcctggattctctatcaatgggtccaactctggaaaatat

gaattccataaaaacagtaaactggaaaccatagtagatatgcaaaggac
atgtataatattaaaaacgtataaggtaaggtaaaaaaagaaagctctta
cagaacattatgagaagagcaacctccaatgcgccattgagctcattttc
tattggccaacttcttctggacatgccacctccccctaagagcattttgt
ttattttagaagacattgttttcttgttggcttctatccccttggctctt
atacattttgcctcctcttctgcaggccctctgataccagaggagaggga
ttttagagaggcatcccatttagggctgaatattccactatctctcactc
tctgaatattttatgtctgggggggggggtctctgtatttgttctcattc
cctgcagaaggaagattcactatgatggctgagcagggcacttctccatc
catacagcagaatgtcattaggaattttatacttttttccttttatttgt
tatatttctaggttcttttagtagaacaatagtacttgctcttaccctag
gtttctgggctgtcaagtttcagttttcccccatgtgtctcccagctatc
ttagagaaacatcgaagcaatagcttgtttactaggcaagaaacttgatg
taaacctcaatagcatgtggttttaaggatttactttctaaatgtcatat
ttaccattagtgccaaaactgtgaaggtaacagaaaatattttgctaatt
taaacaactcagtcataaaactgcacattgaatgatattgttttgtgaaa
catacaaatagtagggaatcatacaaatatataaattctattaatgggct
gaaaaagaatgggcaatggattctagtgtctaggaggcttccatagacca
ggataaacatatcatgaaatcagattaatggagtcattgtgtaactctac
aagttattctaacaagtcattgaaatctgctgttttaagcaagtaaactt
ttatggcattatcaatttatattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_64489153_64490306
seq2: B6Ng01-256L03.b_46_1189 (reverse)

seq1  ATATTTTTCAGAGTT-GACCATTTGGAATTAGAGAA-CCA-GCTGTAGTG  47
      ||||||| ||||||| ||||  |||    ||||||| ||| |||||||||
seq2  ATATTTTCCAGAGTTGGACCCATTG---ATAGAGAATCCAGGCTGTAGTG  47

seq1  CTATGCCCTGAGGAAGGCTATTTCTCCCTCTCTCT-TGTTATTCTTTATT  96
      ||||| | ||||  | |||||||||||| |||||| || |||   |||||
seq2  CTATG-CTTGAG--AAGCTATTTCTCCC-CTCTCTCTGGTAT--CTTATT  91

seq1  TGCCTGTAGACCTTTGTCTAGGGCCGAATTCTGCCGACCTTTTCCCTTTC  146
         ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  --GCTGTAGACC-TTGTCTAGGGCCGAATTCTGCCGACCTTTTCCCTTTC  138

seq1  ACATTAGCATGTTTACTGCCACCATCCTTGTTAAGCTCCTGTTTAGGCAG  196
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  ACATTAGCATGTTTACTGCCACCATCCTTG-TAAGCTCCTG-TTAGGCAG  186

seq1  CTATATCTGTGAAACTTAATGGGATGAATTACAATCATTAGTTATATATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTGTGAAACTTAATGGGATGAATTACAATCATTAGTTATATATG  236

seq1  GTCTGGTAATATATATGTCTGTAGGAAGATAGCTAGTGCAGCTGCATTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTAATATATATGTCTGTAGGAAGATAGCTAGTGCAGCTGCATTTT  286

seq1  AAATATTGTTAGTCACTACCAGTTAAGTACTATATAGATAATTTCTACCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGTTAGTCACTACCAGTTAAGTACTATATAGATAATTTCTACCA  336

seq1  TTACCTAATATATTAATAGAATATTTGCAGAATTAGAGATTTTGGTGACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAATATATTAATAGAATATTTGCAGAATTAGAGATTTTGGTGACT  386

seq1  TCACAGGCAACTTATGCCAAGGCAGCATAACTATAGTATCTAGAGCCATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCAACTTATGCCAAGGCAGCATAACTATAGTATCTAGAGCCATG  436

seq1  TCTTTTACTTTTTTGTCTCAGCTAACACTTCTGTTTTCTGTTCCATGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACTTTTTTGTCTCAGCTAACACTTCTGTTTTCTGTTCCATGACA  486

seq1  TGAAATACTGCAGCTAGCTCCTGTGTGCCCTCTAAATTTACCATCTCTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACTGCAGCTAGCTCCTGTGTGCCCTCTAAATTTACCATCTCTAG  536

seq1  CTAAGTAATGAAGTTCTTTTAAGACTGAGTAGGATGTGGCTGGAGAGATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAATGAAGTTCTTTTAAGACTGAGTAGGATGTGGCTGGAGAGATG  586

seq1  GCTGAATGGTTCAGAGTTTTGCACAGGGATATGGTTCAGTCCTCAGCAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGGTTCAGAGTTTTGCACAGGGATATGGTTCAGTCCTCAGCAGC  636

seq1  CAAGGATCATAGCCCCCACCTCCTGTAATCCAGCTCCAGGAATCCCAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATCATAGCCCCCACCTCCTGTAATCCAGCTCCAGGAATCCCAAAG  686

seq1  CCCTCTTCCAACCTCCTTGGTATCATTGCATCTGGTGCATGCACATACAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCCAACCTCCTTGGTATCATTGCATCTGGTGCATGCACATACAC  736

seq1  ACTCACACACAGATAGAAAGATGGATAGATAGAAAGATAGATAGATAGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACACAGATAGAAAGATGGATAGATAGAAAGATAGATAGATAGAT  786

seq1  AGATAGATAGATAGATAGATAGATAGACAGACAGAGATAGATGGTAGGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGACAGACAGAGATAGATGGTAGGTT  836

seq1  TTTAAAGACTAGTAGATCATGATTGGCTCCTGTAAGTCAAATTTTGGAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACTAGTAGATCATGATTGGCTCCTGTAAGTCAAATTTTGGAGC  886

seq1  ATTATAGCTACAAACCAATTTTTGGAAGAATTAATAACAATAATTTTCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGCTACAAACCAATTTTTGGAAGAATTAATAACAATAATTTTCAC  936

seq1  TGATGTTGTATGAAGGGTTAACATAAAGCACAATTAACAGAGATGACACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGTATGAAGGGTTAACATAAAGCACAATTAACAGAGATGACACC  986

seq1  AAGAACTGAATAGGGCAGATCCAGATGTGTGACTATCTCTATCACAACTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGAATAGGGCAGATCCAGATGTGTGACTATCTCTATCACAACTG  1036

seq1  TACCCAACAAAATGTCCATCAAAATGGCATGAAGACATGTGGGAGTCAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACAAAATGTCCATCAAAATGGCATGAAGACATGTGGGAGTCAGA  1086

seq1  CAGAACATCAGATGCACATTGTCCATTCCATAAAATGATTCCATTTCAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATCAGATGCACATTGTCCATTCCATAAAATGATTCCATTTCAAA  1136

seq1  TGGAATTC  1154
      ||||||||
seq2  TGGAATTC  1144


seq1: chr4_64341351_64342288
seq2: B6Ng01-256L03.g_144_1088

seq1  GTAAAAAAAGAAAGCTCTTACAGAACATTATGAGAAGAGCAACCTCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAGAAAGCTCTTACAGAACATTATGAGAAGAGCAACCTCCAAT  50

seq1  GCGCCATTGAGCTCATTTTCTATTGGCCAACTTCTTCTGGACATGCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCATTGAGCTCATTTTCTATTGGCCAACTTCTTCTGGACATGCCACC  100

seq1  TCCCCCTAAGAGCATTTTGTTTATTTTAGAAGACATTGTTTTCTTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTAAGAGCATTTTGTTTATTTTAGAAGACATTGTTTTCTTGTTGG  150

seq1  CTTCTATCCCCTTGGCTCTTATACATTTTGCCTCCTCTTCTGCAGGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCCCCTTGGCTCTTATACATTTTGCCTCCTCTTCTGCAGGCCCT  200

seq1  CTGATACCAGAGGAGAGGGATTTTAGAGAGGCATCCCATTTAGGGCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACCAGAGGAGAGGGATTTTAGAGAGGCATCCCATTTAGGGCTGAA  250

seq1  TATTCCACTATCTCTCACTCTCTGAATATTTTATGTCTGGGGGGGGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACTATCTCTCACTCTCTGAATATTTTATGTCTGGGGGGGGGGGT  300

seq1  CTCTGTATTTGTTCTCATTCCCTGCAGAAGGAAGATTCACTATGATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATTTGTTCTCATTCCCTGCAGAAGGAAGATTCACTATGATGGCT  350

seq1  GAGCAGGGCACTTCTCCATCCATACAGCAGAATGTCATTAGGAATTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGCACTTCTCCATCCATACAGCAGAATGTCATTAGGAATTTTAT  400

seq1  ACTTTTTTCCTTTTATTTGTTATATTTCTAGGTTCTTTTAGTAGAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTCCTTTTATTTGTTATATTTCTAGGTTCTTTTAGTAGAACAAT  450

seq1  AGTACTTGCTCTTACCCTAGGTTTCTGGGCTGTCAAGTTTCAGTTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGCTCTTACCCTAGGTTTCTGGGCTGTCAAGTTTCAGTTTTCCC  500

seq1  CCATGTGTCTCCCAGCTATCTTAGAGAAACATCGAAGCAATAGCTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTCTCCCAGCTATCTTAGAGAAACATCGAAGCAATAGCTTGTTT  550

seq1  ACTAGGCAAGAAACTTGATGTAAACCTCAATAGCATGTGGTTTTAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCAAGAAACTTGATGTAAACCTCAATAGCATGTGGTTTTAAGGAT  600

seq1  TTACTTTCTAAATGTCATATTTACCATTAGTGCCAAAACTGTGAAGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCTAAATGTCATATTTACCATTAGTGCCAAAACTGTGAAGGTAA  650

seq1  CAGAAAATATTTTGCTAATTTAAACAACTCAGTCATAAAACTGCACATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATATTTTGCTAATTTAAACAACTCAGTCATAAAACTGCACATTG  700

seq1  AATGATATTGTTTTGTGAAACATACAAATAGTAGGGAATCATACAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATTGTTTTGTGAAACATACAAATAGTAGGGAATCATACAAATAT  750

seq1  ATAAATTCTATTAATGGGCTGAAAAAGAATGGGCAATGGATTCTAGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTATTAATGGGCTGAAAAAGAATGGGCAATGGATTCTAGTGTC  800

seq1  TAGGAGGCTTCCATAGACCAGGATAAACATATCATGAAATCAGATT-ATG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGGAGGCTTCCATAGACCAGGATAAACATATCATGAAATCAGATTAATG  850

seq1  GAGTCATTGTGTAACTCTACAAG-TATTCT-ACAAGTCATTGAATTCTGC  897
      ||||||||||||||||||||||| |||||| ||||||||||||| |||||
seq2  GAGTCATTGTGTAACTCTACAAGTTATTCTAACAAGTCATTGAAATCTGC  900

seq1  TG-TTTAAGCAAGTAAAC-TTTATGGCA-TAT-AAATTATATTGC  938
      || ||||||||||||||| ||||||||| ||| || |||||||||
seq2  TGTTTTAAGCAAGTAAACTTTTATGGCATTATCAATTTATATTGC  945


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