BAC Information

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BAC

Clone NameB6Ng01-256M01
Chromosome4 (Build37)
Map Location 13,705,874 - 13,706,992
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256M01.bB6Ng01-256M01.g
ACCGA062632GA062633
length1,1181,012
definitionB6Ng01-256M01.b B6Ng01-256M01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagttgtgctttgatcagcttactgctttccttaggttattatta
tttttttaatcccttagattcttacatcgctgtaacagaaggtgaagttt
tgaaaacagtgtctccatatgcaagggatttggagacctttttattgtct
ttaacactgtcattcatggtcctcattagcatttattgttgcaagcctac
aagcagaaaatgtgaaattggtatgtcatgaatagccccacagagctctg
gagccctctgattttgcctgcagtgtggtgtgggctgggctttgagggaa
agctgtccagatggctgcctgcacacagcagagctgcaggtttttgtctc
tggtgctgagaggaggggaagttcactggagcatacgccatcacccttgc
attttaacaaaactaactagccattagtcaagatgggagggtgatgacat
cgagacaaaggttttccatatagtgttacaagctgtgtcacaggataggg
ctgagctgctaggtaccttctcttttaacccagtgggttttgtggttgga
aaacgagatggaaatggtaacttctttgcaaattggtgtgcaggtgggtc
ttttacagatctcttttttaaatttgtttaaattggaagatgatatttta
tgctaaaagagtctataaagctaggattcctcactagggctaagaaccta
agtgttgttttatttaaaagctgaaaagaaagaatttagaccatttttcc
tgcagagaaatctacttttaagaacattagtacatttaagtctcatttac
ataaaataatgttcaaccaatgtgtgttaaaaacagttttcagattttag
aatttcttaaatgttaggtctgagagtcaaagttgtcaattataaaagat
atacaataataaatatactgtgctagtatagatcatggccactattataa
caaatatattacagatacaggttctatttttctgttagcaagtgatattt
tttgagatttcattttgcacaaatactagtaaaccttacacaggtggtgc
acattaataacggacatatttgcttcatattgcggaagtgtgaaatattg
aggtttcttctctttttc
gaattccaaaccaaagtcatcaaaaaaggcaaggagaggcacttcatact
catcaaaggtaaaatcctccaagaggaactctcaattctgaatatctatg
ctccaaatacaagggcagccacattcattaaagaaactttagtaaagctc
aaagcacacattgcacctcacacaataatagtgggagacttcaacacacc
actttcaccaatggacagatcatggaaacagaaactaaacagggacacag
tgaaactaacagaagtgatgaaacaaatggacttaacagatatctacaga
acattttatcctaaatcaaaaggatataccttcttctcagcacctcatgg
taccttctctaaaattgaccacataattggtcacaaaacaaacctcaaca
tatacaaaaatattgaaattgtcccatgcatccgatcagaccaccatggt
ctaaggatgatcttcaataacaaaataaataatagaaagccaacattcac
gtggaaactgaacaacactcttctcaatgataccttggtcaaggaaggaa
taaagaaagaaattaaggactttttggagtttaatgaaaatgaagccaca
acatacccaaacttatgggacacaataaaagcattcctaagaggaaaact
catagctctgagtgcctccaaaaagaactagagagagcacacattagcac
cttgacaacacacctaaaacatctagaagaaaaggaagcaaattcacgca
agaggagtagaaggcaggaaataatcagactcaggggtgaaatcaacaaa
gtggaaacaagaagaactgttcaaagaatcaaccaatcaaggagctggtt
ctttgagaaaatcaacaagatagataaacccttagctagactcactaaaa
ggacacagggaacaaaatcctaattaacaaaatcagaaatgaaaagggag
acataacaacagatcctgaagaaatccaaaacaccatcagatccttctac
aaaaggctatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13705874_13706992
seq2: B6Ng01-256M01.b_45_1162

seq1  GAATTCAGTTGTGCTTTGATCAGCTTACTGCTTTCCTTAGGTTATTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGTGCTTTGATCAGCTTACTGCTTTCCTTAGGTTATTATTA  50

seq1  TTTTTTTAATCCCTTAGATTCTTACATCGCTGTAACAGAAGGTGAAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATCCCTTAGATTCTTACATCGCTGTAACAGAAGGTGAAGTTT  100

seq1  TGAAAACAGTGTCTCCATATGCAAGGGATTTGGAGACCTTTTTATTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGTGTCTCCATATGCAAGGGATTTGGAGACCTTTTTATTGTCT  150

seq1  TTAACACTGTCATTCATGGTCCTCATTAGCATTTATTGTTGCAAGCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTGTCATTCATGGTCCTCATTAGCATTTATTGTTGCAAGCCTAC  200

seq1  AAGCAGAAAATGTGAAATTGGTATGTCATGAATAGCCCCACAGAGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAAATGTGAAATTGGTATGTCATGAATAGCCCCACAGAGCTCTG  250

seq1  GAGCCCTCTGATTTTGCCTGCAGTGTGGTGTGGGCTGGGCTTTGAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTCTGATTTTGCCTGCAGTGTGGTGTGGGCTGGGCTTTGAGGGAA  300

seq1  AGCTGTCCAGATGGCTGCCTGCACACAGCAGAGCTGCAGGTTTTTGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCAGATGGCTGCCTGCACACAGCAGAGCTGCAGGTTTTTGTCTC  350

seq1  TGGTGCTGAGAGGAGGGGAAGTTCACTGGAGCATACGCCATCACCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGAGAGGAGGGGAAGTTCACTGGAGCATACGCCATCACCCTTGC  400

seq1  ATTTTAACAAAACTAACTAGCCATTAGTCAAGATGGGAGGGTGATGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACAAAACTAACTAGCCATTAGTCAAGATGGGAGGGTGATGACAT  450

seq1  CGAGACAAAGGTTTTCCATATAGTGTTACAAGCTGTGTCACAGGATAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAAAGGTTTTCCATATAGTGTTACAAGCTGTGTCACAGGATAGGG  500

seq1  CTGAGCTGCTAGGTACCTTCTCTTTTAACCCAGTGGGTTTTGTGGTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGCTAGGTACCTTCTCTTTTAACCCAGTGGGTTTTGTGGTTGGA  550

seq1  AAACGAGATGGAAATGGTAACTTCTTTGCAAATTGGTGTGCAGGTGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGATGGAAATGGTAACTTCTTTGCAAATTGGTGTGCAGGTGGGTC  600

seq1  TTTTACAGATCTCTTTTTTAAATTTGTTTAAATTGGAAGATGATATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGATCTCTTTTTTAAATTTGTTTAAATTGGAAGATGATATTTTA  650

seq1  TGCTAAAAGAGTCTATAAAGCTAGGATTCCTCACTAGGGCTAAGAACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAAGAGTCTATAAAGCTAGGATTCCTCACTAGGGCTAAGAACCTA  700

seq1  AGTGTTGTTTTATTTAAAAGCTGAAAAGAAAGAATTTAGACCATTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTTTTATTTAAAAGCTGAAAAGAAAGAATTTAGACCATTTTTCC  750

seq1  TGCAGAGAAATCTACTTTTAAGAACATTAGTACATTTAAGTCTCATTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAAATCTACTTTTAAGAACATTAGTACATTTAAGTCTCATTTAC  800

seq1  ATAAAATAATGTTCAACCAATGTGTGTTAAAAACAGTTTTCAGATTTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATGTTCAACCAATGTGTGTTAAAAACAGTTTTCAGATTTTAG  850

seq1  AATTTCTTAAATGTTAGGTCTGAGAGTCAAAAGTTGTCAATTATAAAAGA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATTTCTTAAATGTTAGGTCTGAGAGTC-AAAGTTGTCAATTATAAAAGA  899

seq1  TATACAATAATAAATATACTGTGCTAGTATAAGATCATGGCCACTATTAT  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATACAATAATAAATATACTGTGCTAGTAT-AGATCATGGCCACTATTAT  948

seq1  AAACAAATAATAATTACAGATACAGGTTCTA-TTTTCTGTTAGCAAGTGA  999
       ||||||||   ||||||||||||||||||| ||||||||||||||||||
seq2  -AACAAATA--TATTACAGATACAGGTTCTATTTTTCTGTTAGCAAGTGA  995

seq1  TA-TTTTTGAGATTTCATTTTGCACAAATACTAGTAAACC-TACACAG--  1045
      || ||||||||||||||||||||||||||||||||||||| |||||||  
seq2  TATTTTTTGAGATTTCATTTTGCACAAATACTAGTAAACCTTACACAGGT  1045

seq1  TGTGCACA-TAATAACAGACATATTTGCTTTCATA-TGCGG-AGTGTGTA  1092
       ||||||| ||||||| ||||||||||| |||||| ||||| |||||| |
seq2  GGTGCACATTAATAACGGACATATTTGC-TTCATATTGCGGAAGTGTG-A  1093

seq1  TATATTTGAGGTTTTCTTCTTTTTTTC  1119
       ||| |||||| |||||||| ||||||
seq2  AATA-TTGAGG-TTTCTTCTCTTTTTC  1118